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LotjaGi2g1v0276900.1

Overview

Field Value
Gene ID LotjaGi2g1v0276900
Transcript ID LotjaGi2g1v0276900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description alpha/beta-Hydrolases superfamily protein; TAIR: AT1G77420.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9C942|CSE_ARATH Caffeoylshikimate esterase; TrEMBL-Plants: tr|I3S4T0|I3S4T0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0276900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:74854871..74859590) extracted from Lotus japonicus Gifu genome v1.2.

CAACATGGACCATAGTCAACAAATGTTCTCCACTTCGCCGAATACAAAGATTTAGATCCTCCCACTTTCAATCAATTGCA CTGAGTGCAGCATGAAAATTGATGATTCTTCCGTCCAACTTTCATTTTTCACACAACAACATTAATCACATTCTATAAGA GTAGTGTCACATTGAGAAATTTGATACTACAATGGTTTCATAGGATCCATTTCAGGTACAGTAACCACAACCTTAATTTC ATGGAGCTATCTATGAATACACAGAGCCTCTCACTACCCTTCAAATCTCTCATCAATCACTCTTTCAACCATCAACTACC CTTCACAACCAAGTTGATCACTAAACCCAGAACCACAAGACTCACTGTAACAGCAAGGAGGAAGGAACCCATTGAAGGGT TGAGCGATGATTTGAACGCTATAGCTTCTTATAACCTTGATTTTGCATACACTCGAAGAAAGGTTCGTGCAGCTTTTGCT GAGGTGCAGCAGCAGCTTGATCATTGCTTGTTCAAGGTAAAGTTCAAATTTTTGTCATGATCAGTGGAAGGGTTCAATTG TTCAAGTTTCAACATTTTGGGGTTTTGTTCTAGAATTAGAGACTGATTGGTGTAGTGATCTCTTTTGCTAGAATGCTCCT GCTGCGATCAGAACTGAAGAAGTAAGATTTTTTTATTTTTTTGCTTTACCTGTTACTGTTAATTTCCAGAAAAAGCTAGG ACTATGTTTATGTTAAAAATCTCAACTTTTTTACTTTGATTAAGTTGTTACATAAAGTTGTTTACTTTTTACTTATTTGT TAAGTAGTGGTATGAAAGGAATTCAAGGGGAATGGAAATTTTCTGCAAAAGCTGGATGCCAGAGCCTGGCATTCCAATCA AGGCCTCTGTGTGTTTCTGTCATGGATATGGTGATACTTGCACCTTCTTCTTTGAAGGTTTGTCATTTCAGAAAGTTCCT CTGAGAAGTATGTTGTGTTGTGTGTTTTTAAGGTTGGTGGATGTTCTTTGTGTATGATTTGGGGGAGATTTGGAATTTTA TTCAGGTATAGCCAGGAGAATTGCTGCAGCTGGGTATGCTGTTTTTGCTATGGACTATCCAGGTTTTGGACTTTCAGAAG GATTGCATGGTTATATACCAAACTTTGATGATCTGGTTGATGATGTTATAGAGCATTATAGAAGAGTTAAAGGTGTGATT TCTCACTTTTAGGCTTTTAGCATACATGGTGTTGTATTGATTATTATTGTAATTTTTTTTTTCATGTGAAAACACATGGT GTGCGGTGCTGATCATGCTTAATATTTCAATTGACAGCAAGGCCTGATCTGAGAGGTTTACCTAGATTTCTGTTGGGGCA GTCAATGGGTGGAGCAGTTTCTCTTAAAGTTCATCTTAAGGAGCCAAATAATTGGGATGGAGTGGTTCTTGTTGCACCAA TGTGTAAAGTAAGCTCATTCCCCTGTATTGCAATTGATGCTCACCAATTTCTTACAAACTATAAAAGAAGTCTACCCTCA AAAGTGTATTTTGGTTGTACTATATTAAACATTGGCTAACTTAAGTTCGTTTTGCTTTCATTGGCAAGTAGAATATGATA TCCACAAATAACTTGAAAAATAGACTGTCTGCCTCCAGTCAGATTCTTTTAGTGAGATGAGGTGAACAAAGCTATAATGC AATCGGCTACGTCTCTAGTTAAATGTAAAGAAAAATGCAATATATTACAGGAGGTAGCAGCAAGCAGCTGAACAATACTG GAAAATATAAAGAAATGTAACTTACATTTTCAATGAACTTGAAGAGTTGAAATGCCTAAAATGGACTTTATTCAATGAGA GCGGATGGAAGAGAAGAGAAATATGTGATAGATGTGATATATGATGTGGTGTGATATGGAGAGGGAGATAGAGAGAAAAT ATGAGGTGTATTTGGGGTGTTTGTACCGTTTAGGTGTTTAAGAATCAGGATTGTATCAGGTAATACCTTATCCCTTGAAT GCCAGAGGAAGAAAGAATGAGGTCAATATGTTGTCTCCATACGTTGCTGTAGTTGTCTGTTTAGTCTTTGTAGGCCAAGT CTTTTAGTCTCTAACTGATTATGATTGGCCTTCTTGGACTGATTTCCCTATTCAGGACCATCATAAAACTGGATTTGGCT GTTCTATTCAAAAGTGGAAATGGAAAGGGTTCTTTAATAATGATTTCATTTCAATGCTTACCTAGCATAGCCACGTATTG TCTTTGTCTAACCTTCTTGAAGAGGGAGATAATATTGAGGATTAAACTAAAAAATACTTTGGATTGCTTCTGTGTTTTTG GACATTCTTTTTGTGTCATTGAGCGTGGTAATAAAAGCTACAGGCAATAAATGTCATGATATGGTAATATTGTAATGTTA TTTAGTTGAATGAGATACTGTATTTTGTTTTTAATTTGGGGTATTAGCTTAATAGTGTGATGAAGCATGACTTGCTGATC TTGTGTTACTGGTAAGATTGCAGATGACGTGTTACCCTCAGATGCAATTATGAAGGTGTTAACTCTTTTGTCAAACGTGA TGCCAAAAGCAAAACTCTTCCCAAACCAAGACCTAGCTGAGCTGGCCTTCAGAGAACCAAGTAAAAGAAATTTGGTTGGT CACTTTGTCAATATTATTTATCACATGCTTATAGAATGAAATATAAAACCATTTCTATTTCATAAGCTTTCTTTTACAAA ATGTTTTCCACTTCCTGATTGTTTAGAAATTTGTCACAAGTCATCATGGAATTGCTATTATACTTGTGGTCATAGTTGCA TTGTGATTGTTAGAATTCGTGCTGCAATTGCGGTTATGAAGACTTCCAAAACTTCTATGTTCTGGCTGCAGTGGTAGTTG TAGACAGAAATTTTAAAACCATGCTCATCATGTATATGTTGCATTCAATATTAGATCCTTACTATCTGCATGGTCAAATG CCCACATTGTAGCCAGTTATCCGAGTTTCTGTGTTTTTTCATTTATACATGAGGATGGTCGACTTAACTAAATAGGTTTA GGGCCTGAGTCAATGGGAAAATCACATATATAATCCTCTTCTGTTCATTTCATATGATTGGAATATAAGAGTTTTTCTTT TCCTTTCATGTTTTCACTTACAATTACAAAGACAACCTTTTTTTTTTTACTTTGTTGTTTTGAAAAATTGGTACAAGAAA TGGTAAGAACAACAGTTGATTTCAGTATATCTTGAACAATTTTTTTAAAACAAAAGTTTGAAATGCAAGTAAATTGGTAT TATTAAAATTATTAATGAAAATAAGAAATAAAAGTAGAAAGTGTTTTCTTTAGATAAACAGGCCCTGATGTTCTACTACT TTTTACTTATATACCTTATGCGACTGTTTACAAACATATGCCATTTATCCCTTTATAGCAACTTAAGTACCTTCATGAAT ATTACTTCATTGAGGTTGCCAATCAACCCCATTGATATTTATGTGGTTGCTGCATGAATGTCTTCAACAGTTCTGCCAAG TTGATCTTTGCCATTTTTCTGTTTGCGGCACAGTAAAACATCGTAGCTTCTGTCATTGATTTCCTCTGTGAAAGAACGAA AACTTAAGTGTAGATTTCTATTTCTTTGAACTTGTAGTTAATACCTTGCTATCCTCACCTCAAGTTTTATCTTAGTTTAA GCCTACTTGATACTCTGCTCAACCATTATTGTATCATTGCCTTACAACATCTATTAATGAGTAGTCATGCTCATATTCAG GTGTCTTGGTGTTTGGAACAAAACAAACAAAAAACTATAATGTCATTTTATTAATCCGTACACAAACTTTCTTACTCCAA TTGTTATTTTTTTAGGCTGTTTACAATGTTATATGTTACGAAGATAATCCACGACTGAAAACTGGCTTGGAACTTTTAAG GACTACAAAAGAAATTGAGTCACAAGTACAAAAGGTTGGTTTTTCTTTCTCATTCTCATTTCCCCTTTTTCTTTTTGTTG TTTGTTATTTTCCAGGATATGATTTGGTTATGTTATGGCTGTTTCTTTTATCTCCTATTCAATTATTGTTATATCAACAA AATCCATTGAATAGTTTTTTTATGTGGGTGATTAATGACAGGTTTCAGCACCATTATTGATTCTTCATGGAGCAGCAGAT AAGGTGACTGATCCATTAGTGAGTCAATTTCTTTATGAGAAAGCATCTAGCAAGGATAAGACTTTAAAGCTTTATGAAGA TGGTTACCACTGTATTTTGGAAGGGGAACCTGATGACCGAATATTTGCTGTGCATGATGACATTATCTCATGGCTTGATT TTAGGTGTCAACTTAAGTGAGGTTTATACCAACTAATTCATCATTCATCTTACTGTCATGTCATTCTTAGACTTAAATAA TACTCATGATATCTCAATTTATTAAATGCATTCCTAACCACATTGGTTGTTGTAGTTGGACAATGATTGATACAAATAAA CAAATGAGCCGAAGGATTCAGTTTTTATGGTAGCATAATCTATTGACTTTTATTTGTGATAGATGAACAAGACAGCATTT TCTTCAACTTTATTAGGTGATATTAGACTTGAGAGTCTATTTCGTCTTTTTAGCGCTTAAAGTTAATCTGATCAGTTAAA AACCTATTTTGAAGTGTTTTGGTAAGGAACTAAGTTGGTTTAGTGGTAAACAACTTAGATCCCGCAAGAATGAGAGTATA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0276900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTATCTATGAATACACAGAGCCTCTCACTACCCTTCAAATCTCTCATCAATCACTCTTTCAACCATCAACTACC CTTCACAACCAAGTTGATCACTAAACCCAGAACCACAAGACTCACTGTAACAGCAAGGAGGAAGGAACCCATTGAAGGGT TGAGCGATGATTTGAACGCTATAGCTTCTTATAACCTTGATTTTGCATACACTCGAAGAAAGGTTCGTGCAGCTTTTGCT GAGGTGCAGCAGCAGCTTGATCATTGCTTGTTCAAGAATGCTCCTGCTGCGATCAGAACTGAAGAATGGTATGAAAGGAA TTCAAGGGGAATGGAAATTTTCTGCAAAAGCTGGATGCCAGAGCCTGGCATTCCAATCAAGGCCTCTGTGTGTTTCTGTC ATGGATATGGTGATACTTGCACCTTCTTCTTTGAAGGTATAGCCAGGAGAATTGCTGCAGCTGGGTATGCTGTTTTTGCT ATGGACTATCCAGGTTTTGGACTTTCAGAAGGATTGCATGGTTATATACCAAACTTTGATGATCTGGTTGATGATGTTAT AGAGCATTATAGAAGAGTTAAAGCAAGGCCTGATCTGAGAGGTTTACCTAGATTTCTGTTGGGGCAGTCAATGGGTGGAG CAGTTTCTCTTAAAGTTCATCTTAAGGAGCCAAATAATTGGGATGGAGTGGTTCTTGTTGCACCAATGTGTAAAATTGCA GATGACGTGTTACCCTCAGATGCAATTATGAAGGTGTTAACTCTTTTGTCAAACGTGATGCCAAAAGCAAAACTCTTCCC AAACCAAGACCTAGCTGAGCTGGCCTTCAGAGAACCAAGTAAAAGAAATTTGGCTGTTTACAATGTTATATGTTACGAAG ATAATCCACGACTGAAAACTGGCTTGGAACTTTTAAGGACTACAAAAGAAATTGAGTCACAAGTACAAAAGGTTTCAGCA CCATTATTGATTCTTCATGGAGCAGCAGATAAGGTGACTGATCCATTAGTGAGTCAATTTCTTTATGAGAAAGCATCTAG CAAGGATAAGACTTTAAAGCTTTATGAAGATGGTTACCACTGTATTTTGGAAGGGGAACCTGATGACCGAATATTTGCTG TGCATGATGACATTATCTCATGGCTTGATTTTAGGTGTCAACTTAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0276900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELSMNTQSLSLPFKSLINHSFNHQLPFTTKLITKPRTTRLTVTARRKEPIEGLSDDLNAIASYNLDFAYTRRKVRAAFA EVQQQLDHCLFKNAPAAIRTEEWYERNSRGMEIFCKSWMPEPGIPIKASVCFCHGYGDTCTFFFEGIARRIAAAGYAVFA MDYPGFGLSEGLHGYIPNFDDLVDDVIEHYRRVKARPDLRGLPRFLLGQSMGGAVSLKVHLKEPNNWDGVVLVAPMCKIA DDVLPSDAIMKVLTLLSNVMPKAKLFPNQDLAELAFREPSKRNLAVYNVICYEDNPRLKTGLELLRTTKEIESQVQKVSA PLLILHGAADKVTDPLVSQFLYEKASSKDKTLKLYEDGYHCILEGEPDDRIFAVHDDIISWLDFRCQLK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11614
24 387 364 3.0E-226 –
PANTHER
PTHR11614:SF156
24 387 364 3.0E-226 –
SUPERFAMILY
SSF53474
80 383 304 4.65E-44
IPR029058
Gene3D
G3DSA:3.40.50.1820
99 387 289 2.1E-60
IPR029058
Pfam
PF12146
126 367 242 2.0E-64
IPR022742
PRINTS
PR00111
155 170 16 5.2E-9
IPR000073
PRINTS
PR00111
206 219 14 5.2E-9
IPR000073
PRINTS
PR00111
322 336 15 5.2E-9
IPR000073

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0276900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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