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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0278700 |
| Transcript ID | LotjaGi2g1v0278700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homologous-pairing protein 2 like; TAIR: AT1G13330.1 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP); Swiss-Prot: sp|Q9FX64|HOP2_ARATH Homologous-pairing protein 2 homolog; TrEMBL-Plants: tr|A0A0L9UTJ7|A0A0L9UTJ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0278700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75023700..75028674) extracted from Lotus japonicus Gifu genome v1.2.
GATTGTTTCGAAAAATATTGTCTTTAGCTAATACTGGTGGAAGAAACTTGCTTCACGGGCTCGTAGTTAGCTACCATAAT TTAGGATTGTCGTCATTTTATTTAAGTTTTTGTGTTTGGATTTATTTCTTTTGTGCATGAGAGTGACAACTGTGCTGCTA ATTTATAACTAGGAACACAACCATTTATTTTGATTTAATTTAGGTGAAGGAAGTTCCATCGAAACTTTAATCTTTGTTGA GGGCTGATGTACCCGCTTCTATGTCTTCAAGTTAAAAAAAAAATATCATAAGTGGACATTTAACTATTCAATGCAACACT ATAATAAACAACTATACTTGAAATAATACTTTATTTAATAAATTGCCTTTCGTCCTAGTACAAAACGATGTCGTAGAACG CCATTGTGACTTCTAAGGCAATCTTCACTGACTTCGCTCGCTGCTCAGGAATTTTCCCGCTCATTTTCTCGCGATCCAAA CAATGGCTCCGAAGTCCGATAGCGCTGAAGGTATCGTCACCACTGTAACCACCGTCACTCTCACTCTACTCTACTCTACT CTTCGCTTTCATCGATTCAACTAAACTAGTTCCTATGAACTCTACGATTCCCCTTTTCGATTTTCACCACCGCTTCATTT TCGCAATTTCCATTCACGATCTGAACTTCACTTCTCATTCTCACTCTTTTTTGTTTAATTCGCAGCGATCGTGTTGAACT ACATGAACGAGGTACCAAATTTCATATCACATGCTTTATTTATGCTCACTACTCGTTCGCGTTTATGATTCTTTGAACTA GTTTCAATTTCTGTGCAATTTTCTTTGTTGAATCGTAGTTTCTTATGATTTGAGTTTTTTATTTGGTGTGTCTGTGACAA AATTGGTTGAATTATTGTTGTTATGATTGTTATGATTTCCCTATTTTATCAGCAAAATAGGCCGTTGAATACGCAAAACG TTGCGGACGCGTTGCAAAAGTTCAACCTGAAGAAGGCGGCGATACAGAAAGCGTTGGACAATCTTGCTGATGGGGGGCGA ATTTCGTTTAAGGAGTATGGGAAGCAGAAGATATACATGGCGCGGCAAGACCAATTCGATATTCCCAACAGCGAAGAGCT TAATCAGATGAAGGAACAGAATGCCAACCTGCAGAAACAGCTGGAAGAACAGAAGAAGGTTATTAGTGAGGTTGAAGCAG GTATACTTAGTAACAATTTATTTTTAACATGCTTGATATTGTTGATTTATTTTATGTAAGGTCAATTTTGCTGTCTCATA AAACTATATCACTCTTCAAAGATTGGGTTGACTATTTAGACCAATATTAGTGTTAGCAAGAGTGTAATGCTAGCATTCCT TGAAGTGAAGTTATGATGTTGAACTACGTGCAATTCTGGTGCTAGTGTAGTGTGTATTAGTACATTCAATCAAATGTTCA GGGTACACTAAAATAATGTTTAAAGAAATATTACAGCCCATGCTGAAGTAATCTTTAACTGTTGATTTGTTGTGTTCATG CTCACTTGTGAACAATAGACTTAGGGGTTGTTTGTGAGTTAGAGAACTTCTTTAGGGTAGTAGAGACGTAGAGTATTTGA CTCCATGGAAGAGAAATTCTAACTTGATTTACTTAATACAAGGTACTAGTTTTTTGCAAATTTGAAACAGTTGAGAATTT CAGATTTTAGACAAACCCCCTTAATCTTGCAATTTATGGATATTTCTTGTTGGTGCAGAAATTAAATCACTGCAATCAAA TTTAACACTGGAACAGATCTCCGAAAGAGAAATAGATCTCAGAATGGAGGTAACTTATGTGAATTTTTGCGTGAGTTATT TTCTTTGTTGAAAGGGCATTGGTGGTTGTGATGTTTTTGCATCTTTTATGTTCTGCTTTAGGTTCAAGAAATGCAGAGCA AATTGGATAAGTTAAGTGGAGGTGTTACGCTGGTGAGGCCTGAAGAACGTGAGGCAGTTGAGGTTATGTTGTCAGAGAAA ATCACTCAGTGGAGAAAGCGTAAAAGAATGTTCAAGGATCTATGGGACACCCTCACTGAGAACTCACCTAAGGATCCCAA AGAATTTAAGGTTTCTTTCTTGGCCTGTCAGAACCGTAGTTGTTTTTGTTTCTTTTTAATGTTTCTGTCATGATACTGAT ACTTGTTTGCACTTTGCAGGAGGAGCTTGGAATAGAAACTGATGAAGATGTTGGGGTGAGTTTGCAGTCATACAGTGACC TGTTCCAACACGGTAAGAAGCGGCCTAGGGGGCAGTGATATATTTATTGCAACTCTGAAGTCTGACATTCCTAATTGATA AATGAGGAGAATAGATTATTAGGTGTTCCAACTTCATTGAATATCATTGCAAATTACATAGTCTATGTTTTTTAAGAATA TACACCCAGTTTTGGGCTTACTACCCCCCCCCCCCCCCCTCTCCCATACAATTACTGGAACATTATCTCAGTGCAATGTT ATTGTTCATATCTTAGTATTGCCAATGACATAAATCATTATTGTACTTAGGTTTTGAAATTCATATCTGTTGAGGAATGA TTAGTGACTTGAACAGGTTCCAGGAAACAAAACTAACTTTTTCCAATGTAGGAGCCCCACATGTTCCCCCTTACGAATCT TACTAATGCTTTGCTTGGTTTGCTAATATTCTGGTTTAAATTGACAATTCTAAACTGGAAAATGACATAAGATGTCTAAC ACATGGTTTGAACTTTGAAGTAAACTAATCTTTTAAATGCTGGAAACCTGCAGAAAAAATTGATGGTAAATATACAACAT AGAAATTAATGAACCAAGTGATTACACACTAAACTACTAGCAAACTCATATCTGATACACAACATTGCATGCGATGCACT CATACTCAGCAATTAAGCATCATCTAGTCCTTACTGAAATTGGCCTCTTCTCCAAATTCAACAGAGGCGCACTCTGTTTC TTGGATCCTGATATTGTATTTATAACTAGGTTACTAGAACCTGATCCAACCTCTATACCAGCATCATACCTTGAAGATAT CTGCTTAGAAGATAAAATTCTGTTCTGTTTTTTATCAGTTTCATCATCACTCTCATCAAAAACCATTTCATTTTCAAAAG GATCAGCCTCAGTTTCAGCATCCACTGAGGCAACACCCCCCTTCAAAATCTCATCAGCTGAATTGCAACTTAAAATGTCT TTTTGCTTATTAAACTCGTCCATTTCCTTGTTAAAATTTTCACCTTGAGATCCCCTACGGATTTCCTTGTCTTCCTGTGG CTGAGGTTTCACAGAATCATGTCCATCCAACACTTTTCTTGGCTGGAAGCTTGGACTACTATGATCGTCAGGATCATGTG ATCCAGATCCAGGTCGTGAGAGTTCCATAGCTGCCCTTGCCGCATCTGCAGCATATGCTGCGGACTCAAAAGCTGCTTGT GCTGCATCAGCTACGTCCTTGTACTTTTTCCTGACCTTGAAGGAATCAGTTAACTCCTCATCTTTTCCTCTATTAGGCAA AATTCTGATAATCTCTTCCTTCATCTCATGTTTATGCTGGTTTTGCTTTTCTACATTGGATATTTCCTGAATAGTTCACA TCAGAAGCCTTAAGTAGTTGTTTTGCAAATGTTCTAAGCAATAAAATTGAAATTTTTGCTGCCTTAGATTGTATACCTCA ACAGGAGAAGAAGCTTCTTCAAGCTGTAGAACAATTCCATTCTCAGAAGCAATATCTTTGAGTGCCTTCATTCTACTCTC CAAGCTTGGCATCCTTGTTGACAACTTTTGTATCATCTATAAATAGACAGATAAAAAGGATAGATTCGAGTACGAGTACC ACAGAAACTCAAAATCAGCATAGGAGGGATTATCTGCTTTTACCCAAAATTTTAGCTTGTATATTAAATTCTAGTACCTA ACAAGTGTATTCAACAGGCAAAGAACATAGAGGTAATGCCACAATTTAAACACACACAAATTACTGATTATCATGTCAGA TATACCTGGGGATGGACTCCACAGTTATTCCTTAACTCAATAGCACGAGCAGCAAAGTCCTTACCAAACCGAGAGGTCAA AACTGCACGAATCTCTTGAATCTCTGGAAAATCTCCACACCTAGAAGCTGCATAGAGTAATCCTGATGCTGCCTCCTTTA GTTCCTCAGGACATTCTCTACAATGACAACAAAACTGAGCTCGTCAAATCAAGAAGAAAAGCAAAAACAAAATGCCTAAA CAAAATTATAAGTTTTGTTTTGGCCAAGGAAGCAGAGTTTTAATTAAACCAACCTTTCTTGTTCAATGAGGTGGATCCTT TCAATCAATAGACTGCAGTATCCTTCAATCTTGTCGTACATATCCAACATATTTTGATCCTTGATCACATGCTCAACCTA TAAAAAAACAATCCAGATCCTCAAAAGGAGCAAGAGTAAGATATGATATGAGATGAAAAAAAGACCCTTGAGAGACAACA CACAGCACATGTATCTTACTCGAAGCAGAGCTCGTTCATGTTGACCGGCTTGGAGAAGTTGAAGGACATCTGAACGGGCT TGTCTGAAACGAACCTGACGCTGGTTCTTGAGAACAGCAAGGCGTGAGATGGCAAGGTTCACAGTTGGCTTGAACTTTGA AACCTTGAAGGTTCTGCCAAGAAGAGCATCAAGCTTTTTACCCATACGTGCGTACCTTAACTTCCAATGAGCTTTGCTAT AGAAAAGATATGAATGAGCAGAACAACACACACACCCTCGTGGGGTTGATGGCAATGACAATATGAATAGCAAAAGCAGG TACAACGTATGGAACAAACAAGAAGGCACAAGCTTGTGAGTTGTTTAGATGAGAGAGAGAATGGAGCTTTTATAGGTAAA AGATCATCTACGGTTCAAAGGAAACAATTGCACCTCTCTATATACATCCGATGGTTGTCATTGCACCTCTCTACCAAATG CGTATATAATAATAT
CDS sequence (LotjaGi2g1v0278700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGAAGTCCGATAGCGCTGAAGCGATCGTGTTGAACTACATGAACGAGCAAAATAGGCCGTTGAATACGCAAAA CGTTGCGGACGCGTTGCAAAAGTTCAACCTGAAGAAGGCGGCGATACAGAAAGCGTTGGACAATCTTGCTGATGGGGGGC GAATTTCGTTTAAGGAGTATGGGAAGCAGAAGATATACATGGCGCGGCAAGACCAATTCGATATTCCCAACAGCGAAGAG CTTAATCAGATGAAGGAACAGAATGCCAACCTGCAGAAACAGCTGGAAGAACAGAAGAAGGTTATTAGTGAGGTTGAAGC AGAAATTAAATCACTGCAATCAAATTTAACACTGGAACAGATCTCCGAAAGAGAAATAGATCTCAGAATGGAGGTTCAAG AAATGCAGAGCAAATTGGATAAGTTAAGTGGAGGTGTTACGCTGGTGAGGCCTGAAGAACGTGAGGCAGTTGAGGTTATG TTGTCAGAGAAAATCACTCAGTGGAGAAAGCGTAAAAGAATGTTCAAGGATCTATGGGACACCCTCACTGAGAACTCACC TAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGAATAGAAACTGATGAAGATGTTGGGGTGAGTTTGCAGTCATACAGTG ACCTGTTCCAACACGGTAAGAAGCGGCCTAGGGGGCAGTGA
Protein sequence (LotjaGi2g1v0278700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKSDSAEAIVLNYMNEQNRPLNTQNVADALQKFNLKKAAIQKALDNLADGGRISFKEYGKQKIYMARQDQFDIPNSEE LNQMKEQNANLQKQLEEQKKVISEVEAEIKSLQSNLTLEQISEREIDLRMEVQEMQSKLDKLSGGVTLVRPEEREAVEVM LSEKITQWRKRKRMFKDLWDTLTENSPKDPKEFKEELGIETDEDVGVSLQSYSDLFQHGKKRPRGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 79 | 79 | 5.0E-26 | ||
| PANTHER | 2 | 224 | 223 | 1.8E-79 | ||
| SUPERFAMILY | 6 | 74 | 69 | 3.96E-5 | ||
| Pfam | 8 | 68 | 61 | 1.5E-26 | ||
| Coils | 77 | 115 | 39 | - | – | |
| Coils | 118 | 138 | 21 | - | – | |
| Pfam | 149 | 206 | 58 | 5.3E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Reciprocal meiotic recombination | The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. |
Expression pattern of LotjaGi2g1v0278700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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