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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0280600 |
| Transcript ID | LotjaGi2g1v0280600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT1G25550.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|D2KTV3|D2KTV3_LOTJA MYB-type transcription factor; Found in the gene: LotjaGi2g1v0280600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75232879..75235716) extracted from Lotus japonicus Gifu genome v1.2.
TAAATCGCATCCAAGATTCGTTTTTCTTATGCGACGCCCCGACCATGATGTTTTATTACCACAACCTTGTTCCAATCTCA AACACAAACACTCTCTCTCTCTCTCTCTCTAGCTTTCTCTCTCTAGCTTTCTCTTTCTTCTCTCAGTTTATTCCCAATTT TGATTCTGCTTAGATCCCTTATTCTTCTTCGTTGCATCCGTTTCATTACGCCATTCCCTATATATTCCTCCTTACCCTCT TCCTCATACTGGTTTTCATCACTGAATTTCACACCAGAAAAGAAAATTTACAAGAGAAAATTTAGAACAGAACCTTGTTT TTTGATTCAACAATGCTATTCTCCCAGAAAATGCAACCCCATAAGATGGGGTCTCGTGAGTATATCCAAGCATTGGAGGA AGAAAGGAAGAAAATCCAGGTTTTCCCTAGAGAGCTTCCTCTTTCATTGGAGCTTGTAACACAAGGTAAACAAACCAAAC AAAACCCAGAAACCAAAAGTAAATTTTGAAACAGAAAATCATATCTTTTTTAATGTAGGGAGTTAAAGTTTCTTGCTTTG CTTTCTGGGTGTTTTTTATTTTGATTTTCAGATGTGGGTTTTGAAAAAGCTAACTTTTTTGTTTTTTTTGTGTGTGTGAA TTTGATGCAGCCATTGAAGCGTGTAGGCAGCAGTTATCTGGAACGACGACGGATTACAATCTGAACAATGGCCAATCGGA GTGTTCAGGGCAGACATCAACGGAGGATGGTCCTGTTTTTGAGGAGTTTTTTCCTATGAAGAAAAGGGCAGCTCCTGATT GTGATGAAAAAGATGAGGATGATGATGATGATGAACTACATTCTTATAAAAAGAAATCAGATTGGCTCAGATCTGTGCAG TTGTGGAATCCTAATCCTTCAACAACTAAAGAGGTAAACAGAAATGAGAAAATTGAAGTTGAATTGAACTGAATTGTTGT TGATTTTGAGGAAAATTAATAGTTTTTTATGGAATTTTTGTTTAGGATTTGCCTAGGAAGACTAATGTTGTGGAAGTGAA GAGGAATGGTGGTGCGTTTCATCCATTCCATAGAGAGGAAAGTGGTGTTGGAAAGGCTAGTAATGTTGTATCTGCAGCTT GTAAAGCACCGTCTTCACCGCCGGTACCTGCTACGAGTTCTACAGGACCAGTTAGAGTAGATAGCAATGATGGAGGCAGT AAAAGAGATGAGAAAGGACAGGCTCAGAGGAAGCAGCGCCGGTGCTGGTCTCAGGAATTGCACAAGCGCTTCTTGCATGC CCTTCAGCAGCTTGGTGGTCCAGATGGTGAGTATCTAAGAGTGTGTTTGGTTTCGCATTAGGAAACGCTAGGAATATGAT CAATTCTGGTAGAGTAAAATCAGTTCTGGATGAAAATATTGATGTTCCAGAGTCATTTTGGGGAGTTGATTTCAGGGGAG AATTGATTTCGAGGATAATTGATTTCAGACCTAAAAGTTTGTAGTTTCTGCCTTGAACCATAATGAATCGTGAGATTTTA CAATTGAATTTCACAATGATCCCGAACAAAAATCGCTTTTTTCCCCAAAAGTATCCAAACATAAATCACTTCACTTTTAC AATTATCAATCTTATCAAAATTGATTTTACCATAATCAGTTGTGACAAACGCTGATTCAAACATGCACTAGTAGTTCTGA CTGTTGTTTGTTAATGTTTTCCAAAAACAATTAGCAATTGTGTATATTGATGTTTGATATATTTGGTGTATGTTGCAGTT GCCACACCAAAACAGATCAGGGAGCATATGAAAGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGGTTAG TGTACAACTAAGTTCATAGTAATTTGTTGTTCCATCTCTATGATCTGGTATAATTGGTGCTGTGTCAAAATTGAGGCTGA AAATGGGCTTTAAGGCACATGTTTATAATGTGTTTGTGTAATGATATATGAGGATAAAGCTTCAAGGTTACCATTTGAGT GTAATTGGAGTGATCTTATTTCTGTTGCAAAAGATGCTGCAATTTTCTTTCTTTTTTTATGTTCTCAATCATAGTCTAAA TTTTTTCTTGCTATGTTTCCAACAGAAATTTCGCCTGCACACAAGAAGAAGCCCTGTAATTCACAACAATGCTAATTCAC AAACAACTCCTTTGTTCCTTGTTGGGAACATTTATGTTCAACCATCAGAATATGGTGCAGTAGCCACCACAACAACAGGA TCAGGGGAATTGACCAAGGTTACTGCTCCATCTGGAATTTATGCACCTGTGGCTGCACATCCTCCAGCAACTGCAGTTAT GAAGAGTCCACAATTGAAGCAATTAGAGGTGTCCTCAAATTCAGAAGAAAGGACCAATCACAGTGAAGGGGCTGTTCATT CAAACTCTGCTGCCTCATCATCCTCCACACACACCACCACAACTTCACCTAGGTGTTGATTTGCAAGATGCTGTAGAAAA TTTTGTAACCAAAGTTTAGTATAAATTATAAAGTCATCTTCTCTGTGATATTTATCTTCTGATTTTTTTTTTAAATTTCT CTTTCTTCCTGTTGTCTGGGGGCTTATATTATAGAGGTGAAAAATACAGTGAATGTGACAGTTTTGATGTTAAATAAGTC ACCCTACTACTCAATGATATTTCTTCTGCACAAAAGTAAACTCATTTTTTCAATTTGGAAGCATGTTAAACGCCCCTTTA AGTATGAATCTGAATGACCAACAACAGGAAATTATGGGGTATTCTAGATACTCTATAGTTCCTTATCGTGTCAATTTCCA ATTTATTTTCTAATTTCAAATCAAATAAGTTCCTTATC
CDS sequence (LotjaGi2g1v0280600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATTCTCCCAGAAAATGCAACCCCATAAGATGGGGTCTCGTGAGTATATCCAAGCATTGGAGGAAGAAAGGAAGAA AATCCAGGTTTTCCCTAGAGAGCTTCCTCTTTCATTGGAGCTTGTAACACAAGCCATTGAAGCGTGTAGGCAGCAGTTAT CTGGAACGACGACGGATTACAATCTGAACAATGGCCAATCGGAGTGTTCAGGGCAGACATCAACGGAGGATGGTCCTGTT TTTGAGGAGTTTTTTCCTATGAAGAAAAGGGCAGCTCCTGATTGTGATGAAAAAGATGAGGATGATGATGATGATGAACT ACATTCTTATAAAAAGAAATCAGATTGGCTCAGATCTGTGCAGTTGTGGAATCCTAATCCTTCAACAACTAAAGAGGATT TGCCTAGGAAGACTAATGTTGTGGAAGTGAAGAGGAATGGTGGTGCGTTTCATCCATTCCATAGAGAGGAAAGTGGTGTT GGAAAGGCTAGTAATGTTGTATCTGCAGCTTGTAAAGCACCGTCTTCACCGCCGGTACCTGCTACGAGTTCTACAGGACC AGTTAGAGTAGATAGCAATGATGGAGGCAGTAAAAGAGATGAGAAAGGACAGGCTCAGAGGAAGCAGCGCCGGTGCTGGT CTCAGGAATTGCACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGTGGTCCAGATGTTGCCACACCAAAACAGATCAGG GAGCATATGAAAGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGCCTGCACACAAGAAGAAG CCCTGTAATTCACAACAATGCTAATTCACAAACAACTCCTTTGTTCCTTGTTGGGAACATTTATGTTCAACCATCAGAAT ATGGTGCAGTAGCCACCACAACAACAGGATCAGGGGAATTGACCAAGGTTACTGCTCCATCTGGAATTTATGCACCTGTG GCTGCACATCCTCCAGCAACTGCAGTTATGAAGAGTCCACAATTGAAGCAATTAGAGGTGTCCTCAAATTCAGAAGAAAG GACCAATCACAGTGAAGGGGCTGTTCATTCAAACTCTGCTGCCTCATCATCCTCCACACACACCACCACAACTTCACCTA GGTGTTGA
Protein sequence (LotjaGi2g1v0280600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFSQKMQPHKMGSREYIQALEEERKKIQVFPRELPLSLELVTQAIEACRQQLSGTTTDYNLNNGQSECSGQTSTEDGPV FEEFFPMKKRAAPDCDEKDEDDDDDELHSYKKKSDWLRSVQLWNPNPSTTKEDLPRKTNVVEVKRNGGAFHPFHREESGV GKASNVVSAACKAPSSPPVPATSSTGPVRVDSNDGGSKRDEKGQAQRKQRRCWSQELHKRFLHALQQLGGPDVATPKQIR EHMKVDGLTNDEVKSHLQKFRLHTRRSPVIHNNANSQTTPLFLVGNIYVQPSEYGAVATTTTGSGELTKVTAPSGIYAPV AAHPPATAVMKSPQLKQLEVSSNSEERTNHSEGAVHSNSAASSSSTHTTTTSPRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 371 | 370 | 7.2E-140 | – | |
| PANTHER | 2 | 371 | 370 | 7.2E-140 | – | |
| MobiDBLite | 170 | 211 | 42 | - | – | |
| MobiDBLite | 177 | 191 | 15 | - | – | |
| MobiDBLite | 193 | 211 | 19 | - | – | |
| Gene3D | 204 | 267 | 64 | 3.7E-25 | – | |
| ProSiteProfiles | 205 | 265 | 61 | 14.166 | ||
| SUPERFAMILY | 206 | 266 | 61 | 9.86E-18 | ||
| TIGRFAM | 208 | 263 | 56 | 8.4E-27 | ||
| Pfam | 210 | 259 | 50 | 3.5E-6 | ||
| MobiDBLite | 336 | 375 | 40 | - | – | |
| MobiDBLite | 353 | 375 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0280600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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