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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0284300 |
| Transcript ID | LotjaGi2g1v0284300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|V7C558|V7C558_PHAVU Phospholipid-transporting ATPase; Found in the gene: LotjaGi2g1v0284300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75741812..75743793) extracted from Lotus japonicus Gifu genome v1.2.
TTATGCATGCATTCTATTATTTTGTTTCTTTCCTTTTGTTTTAACGCATTAAAACTTTTGCTTGCCTATGCTGAAAGGGA TTTCTTGGTGTACAAGTATCATAGTGAAATTGGACAGTTGAAAGTTAGAGAGACCTTATATCTTTATGCTGACTCATGTT TTAGGCTTCCAAGGAAAATATCCGCCAACAGATATCTGAAGCTATTCAACAGCTTGCTGCCTCCAGAGGAACCTCTCAAA GAGCATTTGCTTTAATTATTGATGGAAAATCACTTGCTTATGCTCTACATGATAGTATAAAGGACATGTTTCTAGAGCTC GCGATTAAGTGCGCATCTGTTATCTGCTGCCGCTCGTCTCCGAAGCAAAAAGCACTGGTACGTTTCAATCTATTATGTGC TTCTATTTCTCTATGTGACATAATGTCCTCATTTTTGTTTTAGTTCTGATAAAATTTTGGGTTAGATTTTAAAAATAATA ATTCTTATACTGGTTCCCCTTTTAAAGGTCACTAGACTGGTTAAATCTGGAACTGGCAAAACGACATTAGCTATTGGTGA TGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATATAGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGTATTCA GAAAGTTGATAAATTGTTTGGTTCTATAATTGGTTTTTACTACTTATATTGTATTGTTACTACTTTTTTTAAAATTTCAT TCTCATTCTCCCCCAGGCCGTTATGTCTAGTGATATTGCAATTGCACAGTTTCGTTATTTGGAAAGGTTACTTCTTGTAC ACGGACATTGGTGTTACCGGAGGATCTCATCAATGGTAAGGGCCCTCTTCATATAGAATTAGGTGGTTTTAAGAGTTGCC AAACTACCCTTTAGGCTATAATTTTTTTATTTGAAACCTTTATTTGAGATTCAGATTAACTTGTTTTTTCTTCTTCTGAC AGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTTACCCTATTCTTGTATGAGGTGTATGCATCATTTTCTGGA CAGCCTGCATACAATGACTGGTTTCTGTCTCTGTATAATGTCTTCTTTTCATCACTTCCCGTGATTGCCCTTGGCGTCTT TGACCAGGATGTATCAGCTCGGTACTGCCAGAAAGTAAGCTTACTCTTCACTATAACATGTCATCAAATTTCTGAGAGTA GCTTTGAGTTGAGAATTGATTCCGGTGAAAAAGAAGTTTATCCAAACATGCTATTAACCCCTAATTGAATTTTACTTTTT CATGGTAACTTTTAGTTGAGCCTCAACATTGACATTCCTTGTTATTTGTGTTTAATGTGGCAGTTTCCTTTGTTATATCA AGAAGGTGTGCAAAATGTCCTCTTTAGCTGGCGTCGAATACTTGGCTGGATGCTCAATGGATTCATCAGTGCCATAATAA TTTTCTTCTTCTGCACAAAGGCAATGGAGATTCAGGCCTTTGACGAGGAGGGGAGAACCGCTGGGAGGGACATATTGGGA GCGACGATGTACACATGCGTGGTTTGGGTTGTGAACTTGCAGATGGCACTTTACATCAGTTACTTCACCTTGATTCAACA TATTTTCATCTGGGGATCCATTGCGATCTGGTATCTCTTCCTCCTCGCGTACGGATCATTGCCTCCGAGCCTCTCCACAA ATGCTTACAAAGTCTTCACTGAAACCCTTGCTCCATCTCCTTCCTTCTGGATTGTGACATTGTTTGTGGTGGTCTCAACT CTCATACCGTACTTCTCTTACTCAGCACTGCAGATGCGGTTCTTTCCTTTGTTTCACGAAATGGTGCAGTGGATTAGGTA TGAAGGGAAGGCGAATGATCCCGAGTTTTGTGCTATGATGCGGCAGGGGTCGTTGAGGCCAACAACGGTTGGTTCGACAG CTCGCTTAGCAGCTAAGGATGATGATAACTTTACTAGAGAGAACGGCACTAACCATAGATGA
CDS sequence (LotjaGi2g1v0284300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTCTATTATTTTGTTTCTTTCCTTTTGTTTTAACGCTTCCAAGGAAAATATCCGCCAACAGATATCTGAAGCTAT TCAACAGCTTGCTGCCTCCAGAGGAACCTCTCAAAGAGCATTTGCTTTAATTATTGATGGAAAATCACTTGCTTATGCTC TACATGATAGTATAAAGGACATGTTTCTAGAGCTCGCGATTAAGTGCGCATCTGTTATCTGCTGCCGCTCGTCTCCGAAG CAAAAAGCACTGGTCACTAGACTGGTTAAATCTGGAACTGGCAAAACGACATTAGCTATTGGTGATGGAGCTAATGATGT TGGAATGCTTCAAGAAGCAGATATAGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCCGTTATGTCTAGTGATATTG CAATTGCACAGTTTCGTTATTTGGAAAGGTTACTTCTTGTACACGGACATTGGTGTTACCGGAGGATCTCATCAATGATA TGCTATTTTTTCTACAAGAATATCACATTTGGCTTTACCCTATTCTTGTATGAGGTGTATGCATCATTTTCTGGACAGCC TGCATACAATGACTGGTTTCTGTCTCTGTATAATGTCTTCTTTTCATCACTTCCCGTGATTGCCCTTGGCGTCTTTGACC AGGATGTATCAGCTCGGTACTGCCAGAAATTTCCTTTGTTATATCAAGAAGGTGTGCAAAATGTCCTCTTTAGCTGGCGT CGAATACTTGGCTGGATGCTCAATGGATTCATCAGTGCCATAATAATTTTCTTCTTCTGCACAAAGGCAATGGAGATTCA GGCCTTTGACGAGGAGGGGAGAACCGCTGGGAGGGACATATTGGGAGCGACGATGTACACATGCGTGGTTTGGGTTGTGA ACTTGCAGATGGCACTTTACATCAGTTACTTCACCTTGATTCAACATATTTTCATCTGGGGATCCATTGCGATCTGGTAT CTCTTCCTCCTCGCGTACGGATCATTGCCTCCGAGCCTCTCCACAAATGCTTACAAAGTCTTCACTGAAACCCTTGCTCC ATCTCCTTCCTTCTGGATTGTGACATTGTTTGTGGTGGTCTCAACTCTCATACCGTACTTCTCTTACTCAGCACTGCAGA TGCGGTTCTTTCCTTTGTTTCACGAAATGGTGCAGTGGATTAGGTATGAAGGGAAGGCGAATGATCCCGAGTTTTGTGCT ATGATGCGGCAGGGGTCGTTGAGGCCAACAACGGTTGGTTCGACAGCTCGCTTAGCAGCTAAGGATGATGATAACTTTAC TAGAGAGAACGGCACTAACCATAGATGA
Protein sequence (LotjaGi2g1v0284300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSIILFLSFCFNASKENIRQQISEAIQQLAASRGTSQRAFALIIDGKSLAYALHDSIKDMFLELAIKCASVICCRSSPK QKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMI CYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCQKFPLLYQEGVQNVLFSWR RILGWMLNGFISAIIIFFFCTKAMEIQAFDEEGRTAGRDILGATMYTCVVWVVNLQMALYISYFTLIQHIFIWGSIAIWY LFLLAYGSLPPSLSTNAYKVFTETLAPSPSFWIVTLFVVVSTLIPYFSYSALQMRFFPLFHEMVQWIRYEGKANDPEFCA MMRQGSLRPTTVGSTARLAAKDDDNFTRENGTNHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 162 | 162 | - | – | |
| Gene3D | 3 | 140 | 138 | 1.9E-30 | ||
| PANTHER | 12 | 423 | 412 | 2.7E-263 | ||
| PANTHER | 12 | 423 | 412 | 2.7E-263 | – | |
| TIGRFAM | 14 | 385 | 372 | 7.1E-140 | ||
| SUPERFAMILY | 58 | 155 | 98 | 1.28E-16 | ||
| TIGRFAM | 67 | 182 | 116 | 3.0E-32 | ||
| Pfam | 128 | 378 | 251 | 2.5E-85 | ||
| SUPERFAMILY | 149 | 378 | 230 | 9.55E-26 | ||
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 163 | 180 | 18 | - | – | |
| Phobius | 181 | 191 | 11 | - | – | |
| Phobius | 192 | 212 | 21 | - | – | |
| TMHMM | 193 | 212 | 20 | - | – | |
| Phobius | 213 | 241 | 29 | - | – | |
| TMHMM | 242 | 261 | 20 | - | – | |
| Phobius | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 283 | 19 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 284 | 303 | 20 | - | – | |
| Phobius | 304 | 309 | 6 | - | – | |
| Phobius | 310 | 329 | 20 | - | – | |
| TMHMM | 310 | 329 | 20 | - | – | |
| Phobius | 330 | 348 | 19 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 349 | 369 | 21 | - | – | |
| Phobius | 370 | 435 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Phospholipid transport | The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phospholipids are any lipids containing phosphoric acid as a mono- or diester. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Expression pattern of LotjaGi2g1v0284300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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