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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0285200 |
| Transcript ID | LotjaGi2g1v0285200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT2G01150.3 RING-H2 finger protein 2B; Swiss-Prot: sp|Q9ZU51|RHA2B_ARATH E3 ubiquitin-protein ligase RHA2B; TrEMBL-Plants: tr|I3SP32|I3SP32_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0285200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75817454..75818369) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAGTATTTGGCTATTTGCATCCCACCCATTGAAGTTGTCTGTTTCCGTGATTATAAATATCCCCGAAACGTTGCATC TTTTCCTCAAAGCAAAATAGTGTTCTGATCAGATTCCTATATACAATTCTTTCTTTCTCTAGCTCACACCTTTATCATGC TCATGAAGTACTTAACTCTACTCTATACTCATCTCAAATGGGTGTTTGATTTTCTTCTATATTATCCCTTCTACACCCTC CATGGTTCTCAATTCCCAATAATTGGAGAGGAACAAGAACAGGGCATGTGTCAGTTTTATGAACCCAACCTAATTGGTTC AGAGGAAGAAGAGATTGATTGTGCTGTGTGCCTCAGCAAAATTGAAGGAGGAGAGGAGATTAGAGTGCTGAGATGTGACC ATTTCTTTCACAGAGATTGCTTGGATACATGGTTTGGTTTCAAGAACCCCACTTGCCCTCTTTGCAGAGGATCAATGGGT CCAAGAAGGGCCATCAATGAGGTTGGAGCTCAAGTTCTCTTGTTTGAGTTTTGTGCCACCCGCACTCATGATGATCGTGA TACATGGTGGCTACGCTAATTAAGTGTCCACTTAGATTCATGTAAAATTCAATGCTGCAAAATTTGTATTTTGGTTCCTG CTATCACCTATCTCCAATATTCACACAATTAATGAAATTTGGCTCATAGGGTCAAGATTAGCCGGCTCATATATTCATTA AGGCTTAATTCTAGTTTAGACCCCGATGTTTGACAAATGTGTGGTCTGCACCTCTGTGTTTAAAACGTGCGGTCAAGGTC CCTCATCTATCTAAAACGGTAGATTGAAGCCCTTTTGTCCATCTCTGTTAGTTGACCAAACGGAAATTCTGACATGTCAC TTATTTAATTCATAAAATATAGGCTACTAATTGGTG
CDS sequence (LotjaGi2g1v0285200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCATGAAGTACTTAACTCTACTCTATACTCATCTCAAATGGGTGTTTGATTTTCTTCTATATTATCCCTTCTACAC CCTCCATGGTTCTCAATTCCCAATAATTGGAGAGGAACAAGAACAGGGCATGTGTCAGTTTTATGAACCCAACCTAATTG GTTCAGAGGAAGAAGAGATTGATTGTGCTGTGTGCCTCAGCAAAATTGAAGGAGGAGAGGAGATTAGAGTGCTGAGATGT GACCATTTCTTTCACAGAGATTGCTTGGATACATGGTTTGGTTTCAAGAACCCCACTTGCCCTCTTTGCAGAGGATCAAT GGGTCCAAGAAGGGCCATCAATGAGGTTGGAGCTCAAGTTCTCTTGTTTGAGTTTTGTGCCACCCGCACTCATGATGATC GTGATACATGGTGGCTACGCTAA
Protein sequence (LotjaGi2g1v0285200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMKYLTLLYTHLKWVFDFLLYYPFYTLHGSQFPIIGEEQEQGMCQFYEPNLIGSEEEEIDCAVCLSKIEGGEEIRVLRC DHFFHRDCLDTWFGFKNPTCPLCRGSMGPRRAINEVGAQVLLFEFCATRTHDDRDTWWLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 124 | 117 | 4.6E-30 | – | |
| PANTHER | 8 | 124 | 117 | 4.6E-30 | – | |
| Gene3D | 53 | 118 | 66 | 1.5E-18 | ||
| SUPERFAMILY | 56 | 113 | 58 | 1.73E-19 | – | |
| Pfam | 61 | 104 | 44 | 5.8E-13 | ||
| SMART | 61 | 104 | 44 | 0.0079 | ||
| SMART | 62 | 103 | 42 | 3.5E-7 | ||
| ProSiteProfiles | 62 | 104 | 43 | 12.563 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0285200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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