Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0289800 |
| Transcript ID | LotjaGi2g1v0289800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT1G11260.1 sugar transporter 1; Swiss-Prot: sp|P23586|STP1_ARATH Sugar transport protein 1; TrEMBL-Plants: tr|I3SEQ3|I3SEQ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0289800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76300611..76303583) extracted from Lotus japonicus Gifu genome v1.2.
CAAACTTTCAGTTCCTATGAATCTAACAACTCCCTATTTCTTTTCATAGAAACCACACTCTAAAATAGGAACAATGACCA CACATAAACAAGGTGCTCTTCAACAACAACAACTGTACGTAGGTACCATGTTTCTATAAGACCAAGGTAATCCAACGCAC ATTAAATTCATATGAAAAATGGAAAGTGTTGTTCGCTGGAAAACCGATGTACTCCAACTCATTGTTCAATTTGAGTGGAT GGACAGGAAAACACATAGAGAATGGGAATTTCTATATATAGTTGTGTTGTTATAATTCAAGGTTTCAATCTCTTCTCCTT ACCCGCTTTCTCTTTTCCCAAGTTTGTAGAGCCAACACAATTCGTCCATGGCTATGGAGGCTCCACACCAGTATCCGGGG AAGCTCACCTTCAGGGTGGTCATCACCTGTATCATGGCAGCCACTGGTGGTTTGATTTTTGGTTATGATCATGGTGTTTC AGGTAAATAATTTTATTCATTCATTTTTGTTTTAATTCTAAAATATTTATTGCTTTGATGATAATGACATTTTCAATTAC CCTTTTGGCTATTGTTTGAGTCTGAAAATGAGATTTTATTTCTGGGTTTTCAATGCTTTTATCTGCTGGATGAGATTTCT TATGTGGGTGTTTTGAGTATTTGTATTTTCCTCAATTTTGAGGTCAATTATGTTAAAAAGGATTCATTTTTATTTTTTTT GGAAATCCAATTATATTAATAGAGGATAGAGTCTAAGCTCAGGATTAATTTTTATGATGCATTTTTCTGGGTTATGATGC ATGTATTGTGGTTGATGAAATGTCTGACTTGGTTTTTTTTGTTGTGTTCTTCATTCTATAGGTGGTGTGACCTCCATGGA TTCCTTCCTGAAGGAGTTTTTTCCATCTGTTTATGAGCAGGAGTCTAATGTGAAGCCTTCTGCAAACCAGTACTGCAAAT TCAACAGTCAGATATTGACGCTGTTTACATCTTCCTTGTATCTGAGTGCTCTTGTTGCGGGTCTAGGGGCATCCACCATA ACCAGGATTATGGGCAGGCGTGCAACTATGATTGTTGGTGGGTTATTCTTTGTATCAGGTGCATTGTTCAATGGATTAGC CGACGGCATCTGGATGCTTATTGTTGGAAGGTTGTTGCTTGGTTTTGGCATTGGATGCGCCAATCAGGTGCATTTTCTTT AGATCTCCCAGCATGTTTGAATCAACTTATTTTTTTTTTCACAATCAATTTTGTTATGACACCCGGAAGTTACTCACAGA TTCTTATTTATAGAATTGATTTTAATCTTGGAATCAATTGTAGAAAGATTTCCAAACAGACACTCAATTGGTTCTTGCTA TGATTGTAGTCCTATGCTAACCGATAGTTGCTCTTCCCATTTTCAGTCAGTGCCAATTTATCTCTCAGAGATGGCTCCTT ATAAATACCGGGGAGGTCTAAATATGTGTTTCCAATTGTCAATCACTATAGGCATCTTTGTGGCCAATCTATTTAACTAC TATTTTGCCAAGATACTGAATGGTCAGGGATGGAGATTAAGTTTGGGGCTTGGTGCAGTCCCAGCCGTTATTTTTGTTGT AGGCTCACTTTGCCTTCCTGACTCACCGAGCTCCCTTGTTGCTCGCGGTCGTCACGAAGCTGCTAGACAGGAGCTTGTGA AAATACGCGGGACTACTGATATTGAGGCAGAGTTAAAAGACATTATTACTGCTAGTGAAGCTTTGGAAAATGTGAAACAC CCTTGGAAGACCTTGTTGGAGAGAAAATACAGGCCACAGCTTGTTTTCGCCGTATGCATTCCCTTCTTCCAGCAATTCAC TGGCTTGAATGTGATTACATTCTATGCTCCAATTTTGTTCAGAACAATCGGTTTCGGACCCACAGCTTCTCTCATGTCTG CAGTGATCATTGGAAGCTTTAAACCCGTTTCAACCCTTATTTCAATATTTGTTGTAGATAAATTCGGAAGACGCACCCTT TTCCTTGAAGGGGGTGCTCAAATGTTGATTTGCCAGGTACTTGTTTCACTTTCACATTTCTCCAACATCAACATTTTTCA TTTCATTGGTCTGTTGGTTTTCAATTAATACGTATTCTCTGTTTTGGCCTCAGATTATCATGACAATTGCTATTGCTGTT ACATTTGGCACAAGTGGGAACCCTGGCCAGCTGCCTAAGTGGTATGCAGTTGTGATTGTGGGTGTCATCTGTGTGTATGT CGCCGGTTTCGCTTGGTCTTGGGGTCCTCTAGGTTGGTTGGTGCCCAGCGAAATCTTTCCACTCGAAATTAGGCCTGCTT GTCAGAGTATCACGGTTGGTGTCAACATGACCTGCACTTTCTTCATAGCTCAATTCTTCACTGCAATGCTCTGTCACATG AAGTTTGGCTTGTTCCTCTTCTTTGGGGGCTTTGTGGTCATCATGACCATATTCATCTACAAGCTATTTCCAGAAACAAA GGGTGTCCCACTTGAGGAAATGCATAAGGAATGGCAGAAACACCCTATCTGGGGCAAGTTTTTGGATGCAGGAAGAGCTG ATGAGAAAGACTCTAAGTGATAATTGTTAGTTCTTTGTTTGTTACACTCTTGGATTTGCAAAGTGTGGCTTCACTTGAAA ATTTTATTGGCCAAGCTTTGTGATGATGCTGCTGTAATATATAAAACATTTAAGTTGGAATCTTCACACATTGTACATTG CAAAGTGCAAAGCCACTTGCATTTGGTTCCATTTAGACTCAGAATTGTAATAAACAAACATGCCACAGTCAAGTTCTTTT CAATGTAGAATACTCTTGTTCTGCTACATGAAGAACTGCGACTAAGTTTTGTCCTTTCAACTAACCTCGCCCCATTGCAT ATCAAATATGAATATAATCCAAGAATATGGAGCATAATGTTTGATGTTAGTTATGAATTGTGTTGAAAATATCATCACTC TTTTCTTTTCCAA
CDS sequence (LotjaGi2g1v0289800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGGAGGCTCCACACCAGTATCCGGGGAAGCTCACCTTCAGGGTGGTCATCACCTGTATCATGGCAGCCACTGG TGGTTTGATTTTTGGTTATGATCATGGTGTTTCAGGTGGTGTGACCTCCATGGATTCCTTCCTGAAGGAGTTTTTTCCAT CTGTTTATGAGCAGGAGTCTAATGTGAAGCCTTCTGCAAACCAGTACTGCAAATTCAACAGTCAGATATTGACGCTGTTT ACATCTTCCTTGTATCTGAGTGCTCTTGTTGCGGGTCTAGGGGCATCCACCATAACCAGGATTATGGGCAGGCGTGCAAC TATGATTGTTGGTGGGTTATTCTTTGTATCAGGTGCATTGTTCAATGGATTAGCCGACGGCATCTGGATGCTTATTGTTG GAAGGTTGTTGCTTGGTTTTGGCATTGGATGCGCCAATCAGTCAGTGCCAATTTATCTCTCAGAGATGGCTCCTTATAAA TACCGGGGAGGTCTAAATATGTGTTTCCAATTGTCAATCACTATAGGCATCTTTGTGGCCAATCTATTTAACTACTATTT TGCCAAGATACTGAATGGTCAGGGATGGAGATTAAGTTTGGGGCTTGGTGCAGTCCCAGCCGTTATTTTTGTTGTAGGCT CACTTTGCCTTCCTGACTCACCGAGCTCCCTTGTTGCTCGCGGTCGTCACGAAGCTGCTAGACAGGAGCTTGTGAAAATA CGCGGGACTACTGATATTGAGGCAGAGTTAAAAGACATTATTACTGCTAGTGAAGCTTTGGAAAATGTGAAACACCCTTG GAAGACCTTGTTGGAGAGAAAATACAGGCCACAGCTTGTTTTCGCCGTATGCATTCCCTTCTTCCAGCAATTCACTGGCT TGAATGTGATTACATTCTATGCTCCAATTTTGTTCAGAACAATCGGTTTCGGACCCACAGCTTCTCTCATGTCTGCAGTG ATCATTGGAAGCTTTAAACCCGTTTCAACCCTTATTTCAATATTTGTTGTAGATAAATTCGGAAGACGCACCCTTTTCCT TGAAGGGGGTGCTCAAATGTTGATTTGCCAGATTATCATGACAATTGCTATTGCTGTTACATTTGGCACAAGTGGGAACC CTGGCCAGCTGCCTAAGTGGTATGCAGTTGTGATTGTGGGTGTCATCTGTGTGTATGTCGCCGGTTTCGCTTGGTCTTGG GGTCCTCTAGGTTGGTTGGTGCCCAGCGAAATCTTTCCACTCGAAATTAGGCCTGCTTGTCAGAGTATCACGGTTGGTGT CAACATGACCTGCACTTTCTTCATAGCTCAATTCTTCACTGCAATGCTCTGTCACATGAAGTTTGGCTTGTTCCTCTTCT TTGGGGGCTTTGTGGTCATCATGACCATATTCATCTACAAGCTATTTCCAGAAACAAAGGGTGTCCCACTTGAGGAAATG CATAAGGAATGGCAGAAACACCCTATCTGGGGCAAGTTTTTGGATGCAGGAAGAGCTGATGAGAAAGACTCTAAGTGA
Protein sequence (LotjaGi2g1v0289800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMEAPHQYPGKLTFRVVITCIMAATGGLIFGYDHGVSGGVTSMDSFLKEFFPSVYEQESNVKPSANQYCKFNSQILTLF TSSLYLSALVAGLGASTITRIMGRRATMIVGGLFFVSGALFNGLADGIWMLIVGRLLLGFGIGCANQSVPIYLSEMAPYK YRGGLNMCFQLSITIGIFVANLFNYYFAKILNGQGWRLSLGLGAVPAVIFVVGSLCLPDSPSSLVARGRHEAARQELVKI RGTTDIEAELKDIITASEALENVKHPWKTLLERKYRPQLVFAVCIPFFQQFTGLNVITFYAPILFRTIGFGPTASLMSAV IIGSFKPVSTLISIFVVDKFGRRTLFLEGGAQMLICQIIMTIAIAVTFGTSGNPGQLPKWYAVVIVGVICVYVAGFAWSW GPLGWLVPSEIFPLEIRPACQSITVGVNMTCTFFIAQFFTAMLCHMKFGLFLFFGGFVVIMTIFIYKLFPETKGVPLEEM HKEWQKHPIWGKFLDAGRADEKDSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 5 | 496 | 492 | 2.4E-266 | – | |
| PANTHER | 5 | 496 | 492 | 2.4E-266 | – | |
| TIGRFAM | 9 | 480 | 472 | 3.3E-120 | ||
| Gene3D | 10 | 487 | 478 | 2.3E-122 | – | |
| Phobius | 13 | 33 | 21 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| ProSiteProfiles | 20 | 473 | 454 | 44.811 | ||
| Pfam | 21 | 484 | 464 | 2.1E-126 | ||
| SUPERFAMILY | 22 | 483 | 462 | 4.19E-58 | ||
| CDD | 23 | 471 | 449 | 0.0 | – | |
| PRINTS | 28 | 38 | 11 | 6.1E-29 | ||
| Phobius | 34 | 75 | 42 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| Phobius | 131 | 153 | 23 | - | – | |
| PRINTS | 132 | 151 | 20 | 6.1E-29 | ||
| ProSitePatterns | 137 | 162 | 26 | - | ||
| Phobius | 154 | 164 | 11 | - | – | |
| Phobius | 165 | 186 | 22 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 187 | 197 | 11 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 198 | 217 | 20 | - | – | |
| Phobius | 218 | 278 | 61 | - | – | |
| Phobius | 279 | 303 | 25 | - | – | |
| TMHMM | 279 | 301 | 23 | - | – | |
| PRINTS | 289 | 299 | 11 | 6.1E-29 | ||
| Phobius | 304 | 314 | 11 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 315 | 337 | 23 | - | – | |
| ProSitePatterns | 333 | 350 | 18 | - | ||
| Phobius | 338 | 348 | 11 | - | – | |
| Phobius | 349 | 368 | 20 | - | – | |
| TMHMM | 351 | 373 | 23 | - | – | |
| Phobius | 369 | 379 | 11 | - | – | |
| Phobius | 380 | 407 | 28 | - | – | |
| TMHMM | 380 | 402 | 23 | - | – | |
| PRINTS | 386 | 407 | 22 | 6.1E-29 | ||
| Phobius | 408 | 418 | 11 | - | – | |
| PRINTS | 409 | 421 | 13 | 6.1E-29 | ||
| Phobius | 419 | 442 | 24 | - | – | |
| TMHMM | 422 | 441 | 20 | - | – | |
| Phobius | 443 | 447 | 5 | - | – | |
| TMHMM | 448 | 470 | 23 | - | – | |
| Phobius | 448 | 469 | 22 | - | – | |
| Phobius | 470 | 505 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0289800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…