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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0289800 |
| Transcript ID | LotjaGi2g1v0289800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT1G11260.1 sugar transporter 1; Swiss-Prot: sp|Q41144|STC_RICCO Sugar carrier protein C; TrEMBL-Plants: tr|I3SEQ3|I3SEQ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0289800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76300966..76303190) extracted from Lotus japonicus Gifu genome v1.2.
CACAATTCGTCCATGGCTATGGAGGCTCCACACCAGTATCCGGGGAAGCTCACCTTCAGGGTGGTCATCACCTGTATCAT GGCAGCCACTGGTGGTTTGATTTTTGGTTATGATCATGGTGTTTCAGGTAAATAATTTTATTCATTCATTTTTGTTTTAA TTCTAAAATATTTATTGCTTTGATGATAATGACATTTTCAATTACCCTTTTGGCTATTGTTTGAGTCTGAAAATGAGATT TTATTTCTGGGTTTTCAATGCTTTTATCTGCTGGATGAGATTTCTTATGTGGGTGTTTTGAGTATTTGTATTTTCCTCAA TTTTGAGGTCAATTATGTTAAAAAGGATTCATTTTTATTTTTTTTGGAAATCCAATTATATTAATAGAGGATAGAGTCTA AGCTCAGGATTAATTTTTATGATGCATTTTTCTGGGTTATGATGCATGTATTGTGGTTGATGAAATGTCTGACTTGGTTT TTTTTGTTGTGTTCTTCATTCTATAGGTGGTGTGACCTCCATGGATTCCTTCCTGAAGGAGTTTTTTCCATCTGTTTATG AGCAGGAGTCTAATGTGAAGCCTTCTGCAAACCAGTACTGCAAATTCAACAGTCAGATATTGACGCTGTTTACATCTTCC TTGTATCTGAGTGCTCTTGTTGCGGGTCTAGGGGCATCCACCATAACCAGGATTATGGGCAGGCGTGCAACTATGATTGT TGGTGGGTTATTCTTTGTATCAGGTGCATTGTTCAATGGATTAGCCGACGGCATCTGGATGCTTATTGTTGGAAGGTTGT TGCTTGGTTTTGGCATTGGATGCGCCAATCAGGTGCATTTTCTTTAGATCTCCCAGCATGTTTGAATCAACTTATTTTTT TTTTCACAATCAATTTTGTTATGACACCCGGAAGTTACTCACAGATTCTTATTTATAGAATTGATTTTAATCTTGGAATC AATTGTAGAAAGATTTCCAAACAGACACTCAATTGGTTCTTGCTATGATTGTAGTCCTATGCTAACCGATAGTTGCTCTT CCCATTTTCAGTCAGTGCCAATTTATCTCTCAGAGATGGCTCCTTATAAATACCGGGGAGGTCTAAATATGTGTTTCCAA TTGTCAATCACTATAGGCATCTTTGTGGCCAATCTATTTAACTACTATTTTGCCAAGATACTGAATGGTCAGGGATGGAG ATTAAGTTTGGGGCTTGGTGCAGTCCCAGCCGTTATTTTTGTTGTAGGCTCACTTTGCCTTCCTGACTCACCGAGCTCCC TTGTTGCTCGCGGTCGTCACGAAGCTGCTAGACAGGAGCTTGTGAAAATACGCGGGACTACTGATATTGAGGCAGAGTTA AAAGACATTATTACTGCTAGTGAAGCTTTGGAAAATGTGAAACACCCTTGGAAGACCTTGTTGGAGAGAAAATACAGGCC ACAGCTTGTTTTCGCCGTATGCATTCCCTTCTTCCAGCAATTCACTGGCTTGAATGTGATTACATTCTATGCTCCAATTT TGTTCAGAACAATCGGTTTCGGACCCACAGCTTCTCTCATGTCTGCAGTGATCATTGGAAGCTTTAAACCCGTTTCAACC CTTATTTCAATATTTGTTGTAGATAAATTCGGAAGACGCACCCTTTTCCTTGAAGGGGGTGCTCAAATGTTGATTTGCCA GGTACTTGTTTCACTTTCACATTTCTCCAACATCAACATTTTTCATTTCATTGGTCTGTTGGTTTTCAATTAATACGTAT TCTCTGTTTTGGCCTCAGATTATCATGACAATTGCTATTGCTGTTACATTTGGCACAAGTGGGAACCCTGGCCAGCTGCC TAAGTGGTATGCAGTTGTGATTGTGGGTGTCATCTGTGTGTATGTCGCCGGTTTCGCTTGGTCTTGGGGTCCTCTAGGTT GGTTGGTGCCCAGCGAAATCTTTCCACTCGAAATTAGGCCTGCTTGTCAGAGTATCACGGTTGGTGTCAACATGACCTGC ACTTTCTTCATAGCTCAATTCTTCACTGCAATGCTCTGTCACATGAAGTTTGGCTTGTTCCTCTTCTTTGGGGGCTTTGT GGTCATCATGACCATATTCATCTACAAGCTATTTCCAGAAACAAAGGGTGTCCCACTTGAGGAAATGCATAAGGAATGGC AGAAACACCCTATCTGGGGCAAGTTTTTGGATGCAGGAAGAGCTGATGAGAAAGACTCTAAGTGA
CDS sequence (LotjaGi2g1v0289800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGGAGGCTCCACACCAGTATCCGGGGAAGCTCACCTTCAGGGTGGTCATCACCTGTATCATGGCAGCCACTGG TGGTTTGATTTTTGGTTATGATCATGGTGTTTCAGGTGGTGTGACCTCCATGGATTCCTTCCTGAAGGAGTTTTTTCCAT CTGTTTATGAGCAGGAGTCTAATGTGAAGCCTTCTGCAAACCAGTACTGCAAATTCAACAGTCAGATATTGACGCTGTTT ACATCTTCCTTGTATCTGAGTGCTCTTGTTGCGGGTCTAGGGGCATCCACCATAACCAGGATTATGGGCAGGCGTGCAAC TATGATTGTTGGTGGGTTATTCTTTGTATCAGGTGCATTGTTCAATGGATTATCAGTGCCAATTTATCTCTCAGAGATGG CTCCTTATAAATACCGGGGAGGTCTAAATATGTGTTTCCAATTGTCAATCACTATAGGCATCTTTGTGGCCAATCTATTT AACTACTATTTTGCCAAGATACTGAATGGTCAGGGATGGAGATTAAGTTTGGGGCTTGGTGCAGTCCCAGCCGTTATTTT TGTTGTAGGCTCACTTTGCCTTCCTGACTCACCGAGCTCCCTTGTTGCTCGCGGTCGTCACGAAGCTGCTAGACAGGAGC TTGTGAAAATACGCGGGACTACTGATATTGAGGCAGAGTTAAAAGACATTATTACTGCTAGTGAAGCTTTGGAAAATGTG AAACACCCTTGGAAGACCTTGTTGGAGAGAAAATACAGGCCACAGCTTGTTTTCGCCGTATGCATTCCCTTCTTCCAGCA ATTCACTGGCTTGAATGTGATTACATTCTATGCTCCAATTTTGTTCAGAACAATCGGTTTCGGACCCACAGCTTCTCTCA TGTCTGCAGTGATCATTGGAAGCTTTAAACCCGTTTCAACCCTTATTTCAATATTTGTTGTAGATAAATTCGGAAGACGC ACCCTTTTCCTTGAAGGGGGTGCTCAAATGTTGATTTGCCAGATTATCATGACAATTGCTATTGCTGTTACATTTGGCAC AAGTGGGAACCCTGGCCAGCTGCCTAAGTGGTATGCAGTTGTGATTGTGGGTGTCATCTGTGTGTATGTCGCCGGTTTCG CTTGGTCTTGGGGTCCTCTAGGTTGGTTGGTGCCCAGCGAAATCTTTCCACTCGAAATTAGGCCTGCTTGTCAGAGTATC ACGGTTGGTGTCAACATGACCTGCACTTTCTTCATAGCTCAATTCTTCACTGCAATGCTCTGTCACATGAAGTTTGGCTT GTTCCTCTTCTTTGGGGGCTTTGTGGTCATCATGACCATATTCATCTACAAGCTATTTCCAGAAACAAAGGGTGTCCCAC TTGAGGAAATGCATAAGGAATGGCAGAAACACCCTATCTGGGGCAAGTTTTTGGATGCAGGAAGAGCTGATGAGAAAGAC TCTAAGTGA
Protein sequence (LotjaGi2g1v0289800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMEAPHQYPGKLTFRVVITCIMAATGGLIFGYDHGVSGGVTSMDSFLKEFFPSVYEQESNVKPSANQYCKFNSQILTLF TSSLYLSALVAGLGASTITRIMGRRATMIVGGLFFVSGALFNGLSVPIYLSEMAPYKYRGGLNMCFQLSITIGIFVANLF NYYFAKILNGQGWRLSLGLGAVPAVIFVVGSLCLPDSPSSLVARGRHEAARQELVKIRGTTDIEAELKDIITASEALENV KHPWKTLLERKYRPQLVFAVCIPFFQQFTGLNVITFYAPILFRTIGFGPTASLMSAVIIGSFKPVSTLISIFVVDKFGRR TLFLEGGAQMLICQIIMTIAIAVTFGTSGNPGQLPKWYAVVIVGVICVYVAGFAWSWGPLGWLVPSEIFPLEIRPACQSI TVGVNMTCTFFIAQFFTAMLCHMKFGLFLFFGGFVVIMTIFIYKLFPETKGVPLEEMHKEWQKHPIWGKFLDAGRADEKD SK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| ProSiteProfiles | 1 | 450 | 450 | 21.99 | ||
| PANTHER | 5 | 124 | 120 | 9.4E-242 | – | |
| PANTHER | 5 | 124 | 120 | 9.4E-242 | – | |
| Gene3D | 10 | 464 | 455 | 2.3E-109 | – | |
| Phobius | 13 | 33 | 21 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Pfam | 21 | 125 | 105 | 9.5E-14 | ||
| SUPERFAMILY | 22 | 460 | 439 | 3.79E-47 | ||
| CDD | 23 | 448 | 426 | 1.0429E-169 | – | |
| PRINTS | 28 | 38 | 11 | 1.9E-19 | ||
| Phobius | 34 | 75 | 42 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 76 | 95 | 20 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| Phobius | 107 | 129 | 23 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| PANTHER | 125 | 473 | 349 | 9.4E-242 | – | |
| PANTHER | 125 | 473 | 349 | 9.4E-242 | – | |
| Pfam | 126 | 461 | 336 | 2.1E-97 | ||
| TIGRFAM | 126 | 457 | 332 | 3.9E-90 | ||
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 163 | 23 | - | – | |
| TMHMM | 146 | 165 | 20 | - | – | |
| Phobius | 164 | 174 | 11 | - | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 175 | 194 | 20 | - | – | |
| Phobius | 195 | 255 | 61 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 256 | 281 | 26 | - | – | |
| PRINTS | 266 | 276 | 11 | 1.9E-19 | ||
| Phobius | 282 | 292 | 11 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 293 | 314 | 22 | - | – | |
| ProSitePatterns | 310 | 327 | 18 | - | ||
| Phobius | 315 | 325 | 11 | - | – | |
| Phobius | 326 | 345 | 20 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| Phobius | 346 | 356 | 11 | - | – | |
| TMHMM | 357 | 379 | 23 | - | – | |
| Phobius | 357 | 378 | 22 | - | – | |
| PRINTS | 363 | 384 | 22 | 1.9E-19 | ||
| Phobius | 379 | 397 | 19 | - | – | |
| PRINTS | 386 | 398 | 13 | 1.9E-19 | ||
| Phobius | 398 | 420 | 23 | - | – | |
| TMHMM | 399 | 418 | 20 | - | – | |
| Phobius | 421 | 426 | 6 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 427 | 446 | 20 | - | – | |
| Phobius | 447 | 482 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0289800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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