Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0295400 |
| Transcript ID | LotjaGi2g1v0295400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G26460.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZD1|PPR58_ARATH Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; TrEMBL-Plants: tr|A0A1J7HNZ5|A0A1J7HNZ5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0295400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77028377..77034114) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAGAGTTCACTGGGCCTCTCCCTGATAATCAAAGCCCAACTTCCAATCCATTTCCCCTCCAAACAAAAAAACCTCA AACTTACCATTTCATTTCATCACTCACCAGATTCACCACCATCCCCGTTCCCTACCCGGGCTGAATCCAAAGCACGCACA GAAACCCTAGATGCGTTAAACCCATTCACAGTTCAAACCTCACACTCACTCTCTCACACACTCTCCACCATGTCACAAAT GGCGATCCTCCATCGATCTCGCTTCCTTCTCTCCAAACCCACCGCCATCCGTACCATCGCCACATTCCCCTTCCTCTCTC AAGAACCCGAGCTCGCCGAACCCACTCCCAACCCCAACCCCAACCCCACCGCCTCCCCGCTCCCTCCCAACCCCGCTTCC GGCAGCCCTCTTTACGGCGAGAATTGGCGGAACCCCAATCCACGCCCCTCCGCCTCCTCCAGCGCCATCGCCATCGCCCC CCTCGGCTACACCGGCCGCACCACATTGTCGGAATCCTACGACTCCCTCGAGCTCCAGAACTTGTTCGGTGAATACATGG CGTCGCAGAAATGGGATGAAGTCAAGGATCTGTTCGAGGCTTGGGTGAGGTCTCTCGACAAGAATGGGAAGCCTAACATG CCTGATGTTAACCTCTACAATCACTACCTCAGGGCCAACCTCATGATCGGAGCCTCCGCGGCTGAGTTGCTCGACATCCT TGCTCAGATGGATGATTTCAACGTCGTCCCTAATACGGCATCGTTTAACCTCGTCCTCAAGTCTATGCATCAAGCTGGTG AAACCTTTGCTGCTGAGAAACTCCTCGAACGGTTAGATCATCTCACATTCTAAATTCTGATATGCTTGTCATTTCCAGTT TTGTTTATGCAGTACCTAGTTGTGTGGTATGAATATTGTTTACACTACCCGCTTCATTATGTTTTGATTATTGGGGAGTT ACTGTTTGTGAGTTGTTGATGAAAATATTTCTGGTTTACCAGGCAAGAGGTTACGTTGCTCGAAGTATTGTTAATGGGTT GGTTATATACTAACTTAACCAACTACTTGTTTTCATACATTTTACTAAACTGAAAATATTTTGGTCTGGAATTCCTAACT TGTAATAGTTGCTTTGGTTATTTGCTGTCTCTTGCCTGTTCTTGTGCATCTCGAATGTCAGCAAAGCCCGCACATTAGAG TCGGGCTTTGAAGAGTTGAGAGAAACTAATTTCAAAATGGAAAAGGGTTAATATGAGACTTTGGCTTCTGTGTCAGTCTC ACTGGGTTTGAAAGAAAAATCCAGATGCTGGATGGTGGTCTAAATTGCCTCTTTGTCATTTGATTTAGATGTGAGCTCAC TCCTACAAGCTAGGTTGTTTTGTGGGTAGATCCTCCACTTTAAATGAAGTTTTGCTTCTCTCGACCAGCTGAAGAGGTCT TGCTCATTAGTCATATCCAAGGTAGTTAAAATCAAGATTTTACCTTGAATTGGGAAGGGGAGTCAAAATCTTAAATCATA GAATTGTAAAATGAATAGTAAGATTTTACTAAATCATAAATTCGTAACACAAATAGGTATCTTCTCAAAGTCTTCCAACA TTAAGTCAATGCTATGTGCTGGACAATGCGTCCAACATAAAAAAAATGTATGTATATGGTACAAATTATACCAAATATAG CGAAAAAATCACTATCCCGGCCATCCCATTATCCGGGATCCTGCTATCCCAGTTTTGAGGCTGGCTGCGACGAGCTGGAA ACTGGGATTGACAACATAGCTCCTACTTCCCTAAGCATTCCATGGTAATTTTGAAGGGACACTTGTGAAGCCAAGAGCAT TGGTGCTTCATACTGCCACCATCACCCGAGCTTTGACCAGTGCCATTATTGCCATGACCACCCCCCCTTAAAGCCATTTT CAGCTAAAAAAACAGACCAAAAGGGTCGAACAAAGCAGACCAAACAGAGAATAACATAAAAAATTGCTGAATAAAGCAAA GGGTCGAACAAAAAGTAGCAGAGTAACAATGAAGTTGTGTTCAAAGTTGAAGAGCAGCAGGGCGGGGTATCTCACAAAAT AGGCGACTTAACTCAGAAGTTTTAGCTTCTCACTTTTGGAGAGCAGCATCAATGGCGTCTCAGAGCTATTCGCCAAAAAG TGAAGGGTTGGGGACAAAGAGGCAAACTCTGGTCTTACTCCAATTATGGTTCCAATGTGAGGGGAAAGAAGTGTGATAAT TCAATTAGGGTTAGGGACAAATGGAGATTGGGTTATATCCAACTGGGTTGTAGATCCAGATGCGAAATATGGACATTTAT CATGGCTTAATTCTGCAATTTCACTTTTCAAATTGAGATCCACTTTGATTTCACCAAAATGTGATTTTAGCGGCAATTCC CATCTCAGGTCATAACATTGTTAAATTATACAATTTTACGATTCAACACATGATTTTAGCCTATCTTGATTATATCTTTT TAAGACTGAACATAATTTGAAATGCCAAAAAGCATACCAGTCAGGGAAACCAAAGTCAAAATTATTCTCTTAATGAATAA CATTCATAATTTGTTGTATTATTTATGTGTAAATTGTACATATTTACTTCTTTAAGTGTCAAGCTTTGCTTTGTTTTTAT CAGGATGCTGGAGTCGGGAAATGAATCTCTCCCTGATGATGAATCATATGACTTGGTCATTGGAATGCTCTTTCTAACGG ACCAGATTGATGCTGCATTCAAATATATAGATTTAACTTTGAAATCTGGTCACGTGTTGTCAATGAAGATATTTTCGGAC TGTGTCAGGAGTTGTGTCAATAAGGGAAGGCTAGATTCATTGGTGACAATAATTGAAAGGTGCAAGGTGCGTGGTTAATC TTGTTGATACCTCATATTTTTCTGCATCAGATTTACTTATAACTTCACACTTCATTATGTAATTTTTCATTGCTGTGTCT AGGCAACAGAAAAAAACAAAGCTCTTTGCCCCTCCTGGACCACGTGCTATTTTATAGCTGAAATTGCATTGCGAGAGGAT AATAGCAAGTTAGCCTTTTATAGCCTGGAGTTTATGGCTAAATGGATGGTAAAGGGTGAACGTGCAAACCCCCCCGTTTT GCTTTCTGTAGATGAAGGTTTAGTCGTGTCAGCTCTTTTGACTGCAGGTAGAACCTATAGTTCTGAGCTGCTAGGGGCAT CATGGGCTGTTTTGCGCCACTCACTGCGTAAAAAGAAAGTTCCTAATCCAGAATCATACCTTGGAAGGATATATGCCCTT GCATCAATGGGGAATCTACAAAAGGCTTTTGGTGCTCTGTATGAATATGAGTCTGCTTATGGAGATTCCAATCAAGAATC TGAAGACTTGTTCTGCCCATTTACTTCTTTACATCCACTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTTTGGATA ATGTATGTCTTCTTTCTGTTGAAGAAATCAATCAATATCATCTAACCTTTAGATTTTATGTTAATTCAATGTTGTTGTGT TGTTTATAGTTTTTATCTATATTTCATGCACAAATTTTTCTGTTGGAAATAGATTGTAAAATTTTCTTTCTTTACTCAAT ACATATGTATAGTCCTAAAATTCAAATGATTCATTTTAAAAAAATAATCCATGTGACATACCCCTTACAATTACAATACC TTTTTTTCCCCTGTTGGCATGCATTCATCATAACTTAACTTGCTGCTAGATATATATTTTCGTTTTTCATAATGGTATAT TCATTTGCAGGTTTATCTAATCATGTTTGTTCTCATCAGGTTTATTTTCAACTGGAAAATTTAAGCCGTTCAGAGCGTCC TTATAAATCTGTTGCTGCACTAAACTGCATCATTTCAGGATGTGCTAACATATGGGACCTTGATCGTGCTTACCAAACTT TTGAATCGATCCAATCCACTTTTGGGTTGACCCCTGATATTCATTCATACAATGGCTTAATGCATGCCTTTGGGAAGCTC AAGAAGGTGATGGCTCATTTCCCCACCCACCTTTTCTTTAAGAATCTTTCTGCACATTCCCTCTACATCTTCCTCTGCCA TCCTTTTGAAAGCATGCATTGGTCTGAAAGCTAGTATACATGTGCTTTGCATCCACGATATTTGACCTATGTAGGTATCA CTTGCCGATCAAATTTGGTCCTCTTTGTTATTTCAACCATTTTTGTGGGGGCCTTTTAGGGTGAGAAGGAAAAAAATGAA CATCATTGGCAGTTAATATTGATTGTATAGGATGATAGCAAAGGTTACATGCTTGGTTTGAAGCTGGATGGAGAAAAGGC AAACACGTTTTCTTTTGGATGTTCTTTTCCTGCTTGATTATTTATGTGCTACAGCAGGATCTGATGTGTAAGAACCATGA CAAACGTACTTATTACTTTACTTATATTTGGCAGACACATGAAGCTTCAAAGGTGTTTGAGCACCTAACGAGTTTGGGTC TCAAACCTAATGCAAAATCATATTCTGTGCTTGTTGATGCCCACCTGATTAACCGGGATGTCAAATCTGCTCTGTCAGTT GTTGATGATATGGTAATTGCATTGTCCTTTTTCCTAGAATGGAAACAAGTATTTTTTTATTGTGAAGTTCGTTTACGTAT ATCTATTTTATTGGCAGTTGGCTGCTGGTTTTCAACCGACGAAAGAGATTCTTAAAAAAATAAGAAGGCGATGCATACGC GAGATGGACTATGAGACTAACGACAGACTGGAACTGCTTGCTCGAGATCTGAATTACCGATTGGGTGCAGAAGCCCGGCA AAACATTTTGTTTAATCTTAATTACAGTATGGATTATGCTTGAAAGGTAAGTTTTGATGTTTTTTTATGAGATAATATCC TTGGTACTAAAGTCACTCTTCTTTAATACTGATATATGGTTTGCTCTGGCAGTGGCAGGCGCACTTTTTTTTGATGTCCA AATCAATTATTTAAGTTAATATGCAAATCCCTTATTGCATCCATTTCCGAGGCAATCCCTGCATGTATATTAGTGGATGC TGCTGAGGTTTTGCCGTGGCAGGATGGCAAGGATAGCTTCCTGCAATCTTAATTTTTGTACGTATGTGTTTATGAAGCTG GGAGGATGTTGAAGCTGGAATTGGATTTCTTGTGGAAAACTGAGGGCAGTGAATTTTACAGTGAAGTTAATCTGAAATAA TTGTAGGACAGATCCATTTTCAGTTAGGATAGAAGATATCTTGGTAGACATCATCTCTATTGGTTCTTAGTTTTTTGTTT GTTTTTGACACTTCCCATTTTTAACAACCTAGTGCTGGCACGGATTAAATCTGCAAGGATTTGGAAACCTTCCTAATTTT TTTTATGTCTTCTTGTATGGAGCTATGGTTGTATTTCATTCTACTGCTAATAATAGCAACACTCTATTGGTTTGCGATAC GAATATACATTTGTATTATGGAAAATAAGCATAAAAGTCGTAACAAGTAGGAAATTGTTAGTGAGTTTACTATTTAGACA TTAATCCAACAGCATGGCCTAATCTCTTAGATGCTAACTCTATCTTGTGTGAAAATGTGAAATCTCTAGACTTGTAATTT TGGGATTTATGTACGTCAATGGAATTTGGAATATCAAAAGTAATATGAGATGAAGAAAGGGACAACAGTGAAAAGTTTAT TTGATTTTAAATTAGTTTAATATCAACAAGACAACAAATTTGTTTGTTTAAATTAAAT
CDS sequence (LotjaGi2g1v0295400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACAAATGGCGATCCTCCATCGATCTCGCTTCCTTCTCTCCAAACCCACCGCCATCCGTACCATCGCCACATTCCC CTTCCTCTCTCAAGAACCCGAGCTCGCCGAACCCACTCCCAACCCCAACCCCAACCCCACCGCCTCCCCGCTCCCTCCCA ACCCCGCTTCCGGCAGCCCTCTTTACGGCGAGAATTGGCGGAACCCCAATCCACGCCCCTCCGCCTCCTCCAGCGCCATC GCCATCGCCCCCCTCGGCTACACCGGCCGCACCACATTGTCGGAATCCTACGACTCCCTCGAGCTCCAGAACTTGTTCGG TGAATACATGGCGTCGCAGAAATGGGATGAAGTCAAGGATCTGTTCGAGGCTTGGGTGAGGTCTCTCGACAAGAATGGGA AGCCTAACATGCCTGATGTTAACCTCTACAATCACTACCTCAGGGCCAACCTCATGATCGGAGCCTCCGCGGCTGAGTTG CTCGACATCCTTGCTCAGATGGATGATTTCAACGTCGTCCCTAATACGGCATCGTTTAACCTCGTCCTCAAGTCTATGCA TCAAGCTGGTGAAACCTTTGCTGCTGAGAAACTCCTCGAACGGATGCTGGAGTCGGGAAATGAATCTCTCCCTGATGATG AATCATATGACTTGGTCATTGGAATGCTCTTTCTAACGGACCAGATTGATGCTGCATTCAAATATATAGATTTAACTTTG AAATCTGGTCACGTGTTGTCAATGAAGATATTTTCGGACTGTGTCAGGAGTTGTGTCAATAAGGGAAGGCTAGATTCATT GGTGACAATAATTGAAAGGTGCAAGGCAACAGAAAAAAACAAAGCTCTTTGCCCCTCCTGGACCACGTGCTATTTTATAG CTGAAATTGCATTGCGAGAGGATAATAGCAAGTTAGCCTTTTATAGCCTGGAGTTTATGGCTAAATGGATGGTAAAGGGT GAACGTGCAAACCCCCCCGTTTTGCTTTCTGTAGATGAAGGTTTAGTCGTGTCAGCTCTTTTGACTGCAGGTAGAACCTA TAGTTCTGAGCTGCTAGGGGCATCATGGGCTGTTTTGCGCCACTCACTGCGTAAAAAGAAAGTTCCTAATCCAGAATCAT ACCTTGGAAGGATATATGCCCTTGCATCAATGGGGAATCTACAAAAGGCTTTTGGTGCTCTGTATGAATATGAGTCTGCT TATGGAGATTCCAATCAAGAATCTGAAGACTTGTTCTGCCCATTTACTTCTTTACATCCACTGGTTGTGGCATGCTCCAA GAAGGGTTTTGAGACTTTGGATAATGTTTATTTTCAACTGGAAAATTTAAGCCGTTCAGAGCGTCCTTATAAATCTGTTG CTGCACTAAACTGCATCATTTCAGGATGTGCTAACATATGGGACCTTGATCGTGCTTACCAAACTTTTGAATCGATCCAA TCCACTTTTGGGTTGACCCCTGATATTCATTCATACAATGGCTTAATGCATGCCTTTGGGAAGCTCAAGAAGACACATGA AGCTTCAAAGGTGTTTGAGCACCTAACGAGTTTGGGTCTCAAACCTAATGCAAAATCATATTCTGTGCTTGTTGATGCCC ACCTGATTAACCGGGATGTCAAATCTGCTCTGTCAGTTGTTGATGATATGTTGGCTGCTGGTTTTCAACCGACGAAAGAG ATTCTTAAAAAAATAAGAAGGCGATGCATACGCGAGATGGACTATGAGACTAACGACAGACTGGAACTGCTTGCTCGAGA TCTGAATTACCGATTGGGTGCAGAAGCCCGGCAAAACATTTTGTTTAATCTTAATTACAGTATGGATTATGCTTGA
Protein sequence (LotjaGi2g1v0295400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQMAILHRSRFLLSKPTAIRTIATFPFLSQEPELAEPTPNPNPNPTASPLPPNPASGSPLYGENWRNPNPRPSASSSAI AIAPLGYTGRTTLSESYDSLELQNLFGEYMASQKWDEVKDLFEAWVRSLDKNGKPNMPDVNLYNHYLRANLMIGASAAEL LDILAQMDDFNVVPNTASFNLVLKSMHQAGETFAAEKLLERMLESGNESLPDDESYDLVIGMLFLTDQIDAAFKYIDLTL KSGHVLSMKIFSDCVRSCVNKGRLDSLVTIIERCKATEKNKALCPSWTTCYFIAEIALREDNSKLAFYSLEFMAKWMVKG ERANPPVLLSVDEGLVVSALLTAGRTYSSELLGASWAVLRHSLRKKKVPNPESYLGRIYALASMGNLQKAFGALYEYESA YGDSNQESEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENLSRSERPYKSVAALNCIISGCANIWDLDRAYQTFESIQ STFGLTPDIHSYNGLMHAFGKLKKTHEASKVFEHLTSLGLKPNAKSYSVLVDAHLINRDVKSALSVVDDMLAAGFQPTKE ILKKIRRRCIREMDYETNDRLELLARDLNYRLGAEARQNILFNLNYSMDYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 611 | 611 | 0.0 | – | |
| MobiDBLite | 33 | 77 | 45 | - | – | |
| MobiDBLite | 37 | 57 | 21 | - | – | |
| MobiDBLite | 61 | 77 | 17 | - | – | |
| Gene3D | 99 | 319 | 221 | 1.1E-18 | ||
| ProSiteProfiles | 139 | 174 | 36 | 6.292 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.846 | ||
| Pfam | 178 | 206 | 29 | 0.12 | ||
| ProSiteProfiles | 212 | 246 | 35 | 6.171 | ||
| Gene3D | 426 | 583 | 158 | 3.2E-24 | ||
| ProSiteProfiles | 452 | 487 | 36 | 6.675 | ||
| Pfam | 487 | 533 | 47 | 1.1E-9 | ||
| ProSiteProfiles | 488 | 522 | 35 | 11.137 | ||
| TIGRFAM | 490 | 524 | 35 | 5.4E-6 | ||
| ProSiteProfiles | 523 | 557 | 35 | 9.799 | ||
| TIGRFAM | 526 | 558 | 33 | 1.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0295400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…