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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0297000 |
| Transcript ID | LotjaGi2g1v0297000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520; TrEMBL-Plants: tr|I1JEC3|I1JEC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0297000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77201254..77202807) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAAGTTGCAGCAAGAGATGCCTAACACTATTGGAGAAATGCAAGAACATGAAGCAACTCAAGCAAGCACATGCCCA AGTTTTCACCTCAGGCCTTGACAGCAATAGTTTTGCTCTGAGCAGAGTTTTGGCTTTCTGCTCACACCCTCATCAAGGAA GCCTCACCTATGCTTGTAGAGTTTTTCAACGCATTCAACACCCCACAGTCTGTATATGCAACACCATCATCAAAGCTTTT CTCATCAATGGTAACCTCAACAGCACCCTTCACGTTTTTACCAATATGCTGAGGAATGGTTTGAGCCCTGATAACTACAC CATCCCTTATGTGTTGAAGGCTTGTGCCGCGCTTCGAGATCGTTCTTCGGGGGAAATGGTTCATGGGTATAGCTCAAAAT TGGGTCTTTTGTTTGATATCTTTGTGGGTAATAGTTTGATTGCTTTGTACTGTGTGTCTGGTGATATGGTAGCTGCAAGG AAGGTGTTTGATGAAATTCCTAGCCTAAGTGCAGTATCATGGAGTCTGATGATTTCGGGGTATGCAAAGGTGGGTGATGT TGATTCGGCTAGATTGTTCTTTGATGAAACGCCGGAGAAGGATAAGGGGATATGGGGTGCCATGATTTCTGGGTATGTGC AAAATAATTGCTTCAAGGAAGGTCTTTATTTGTTTCGTTTGATGCAGCTGACTGATATAGGGCCTGATGAATCTATATTT GTGAGCATTCTTTCTGCTTGTGCTCATATGGGGGCTTTGGACACCGGCGTTTGGGTTCATAGATATTTGAATCGAGCAAG GCTACCGTTGAGCATTCGTTTGAGTACTAGTTTATTAGACATGTATGCTAAGTGTGGGAATTTGGACTTGGCTAAGAGAT TATTCGATTCGATGCCGGACAGAGACATTGTGTGTTGGAATGCTATGATTTCTGGTTTGGCAATGCATGGAGATGGAATA GGAGCGCTCAAGCTGTTTTCAGAAATGGAAAAGCTTGGGATAAAACCTGATGATATAACATTCATAGCTGTTTTTACTGC TTGTAGCTATTCAGGAATGGCATCTGAAGGTCTGAAGTTGTTAGATAAGATGTTCAGTGTGTACAACATGGAGCCAAAAA GTGAACACTACGGTTGTCTAGTGGACTTACTAAGCCGAACTGGGTTCTTCGAGGAAGCTATGGTTATAATAAGAAGAATA ACCAATTCAAACAATGGCTCTGAAGAAACATTGGCTTGGAGGGCATTTCTGAGTGCATGCTGCAATCATGGACAAGCTCA GCTAGCTACACTTGCAGCTGAAAGACTCGTACGGTTAGATAATCACAGTGGGCTGTATGTTTTAATTTCTAATTTGTATG CAGCGTCTGGCAGACATGCTGACGTAAGAAGGGTGAGGGATGTCATGAAAAACAAAAGGGTAGACAAGGCACCAGGTTGC AGCTCGGTTGAGATTGATGGGGTTGTCATGGAGTTCATTGCTGGTGAGAAAACACATCCACAAATGGACGAAATACACTC AATTTTGGAGAAAATGCATCTGCAATTAGACTAG
CDS sequence (LotjaGi2g1v0297000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGTTGCAGCAAGAGATGCCTAACACTATTGGAGAAATGCAAGAACATGAAGCAACTCAAGCAAGCACATGCCCA AGTTTTCACCTCAGGCCTTGACAGCAATAGTTTTGCTCTGAGCAGAGTTTTGGCTTTCTGCTCACACCCTCATCAAGGAA GCCTCACCTATGCTTGTAGAGTTTTTCAACGCATTCAACACCCCACAGTCTGTATATGCAACACCATCATCAAAGCTTTT CTCATCAATGGTAACCTCAACAGCACCCTTCACGTTTTTACCAATATGCTGAGGAATGGTTTGAGCCCTGATAACTACAC CATCCCTTATGTGTTGAAGGCTTGTGCCGCGCTTCGAGATCGTTCTTCGGGGGAAATGGTTCATGGGTATAGCTCAAAAT TGGGTCTTTTGTTTGATATCTTTGTGGGTAATAGTTTGATTGCTTTGTACTGTGTGTCTGGTGATATGGTAGCTGCAAGG AAGGTGTTTGATGAAATTCCTAGCCTAAGTGCAGTATCATGGAGTCTGATGATTTCGGGGTATGCAAAGGTGGGTGATGT TGATTCGGCTAGATTGTTCTTTGATGAAACGCCGGAGAAGGATAAGGGGATATGGGGTGCCATGATTTCTGGGTATGTGC AAAATAATTGCTTCAAGGAAGGTCTTTATTTGTTTCGTTTGATGCAGCTGACTGATATAGGGCCTGATGAATCTATATTT GTGAGCATTCTTTCTGCTTGTGCTCATATGGGGGCTTTGGACACCGGCGTTTGGGTTCATAGATATTTGAATCGAGCAAG GCTACCGTTGAGCATTCGTTTGAGTACTAGTTTATTAGACATGTATGCTAAGTGTGGGAATTTGGACTTGGCTAAGAGAT TATTCGATTCGATGCCGGACAGAGACATTGTGTGTTGGAATGCTATGATTTCTGGTTTGGCAATGCATGGAGATGGAATA GGAGCGCTCAAGCTGTTTTCAGAAATGGAAAAGCTTGGGATAAAACCTGATGATATAACATTCATAGCTGTTTTTACTGC TTGTAGCTATTCAGGAATGGCATCTGAAGGTCTGAAGTTGTTAGATAAGATGTTCAGTGTGTACAACATGGAGCCAAAAA GTGAACACTACGGTTGTCTAGTGGACTTACTAAGCCGAACTGGGTTCTTCGAGGAAGCTATGGTTATAATAAGAAGAATA ACCAATTCAAACAATGGCTCTGAAGAAACATTGGCTTGGAGGGCATTTCTGAGTGCATGCTGCAATCATGGACAAGCTCA GCTAGCTACACTTGCAGCTGAAAGACTCGTACGGTTAGATAATCACAGTGGGCTGTATGTTTTAATTTCTAATTTGTATG CAGCGTCTGGCAGACATGCTGACGTAAGAAGGGTGAGGGATGTCATGAAAAACAAAAGGGTAGACAAGGCACCAGGTTGC AGCTCGGTTGAGATTGATGGGGTTGTCATGGAGTTCATTGCTGGTGAGAAAACACATCCACAAATGGACGAAATACACTC AATTTTGGAGAAAATGCATCTGCAATTAGACTAG
Protein sequence (LotjaGi2g1v0297000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSCSKRCLTLLEKCKNMKQLKQAHAQVFTSGLDSNSFALSRVLAFCSHPHQGSLTYACRVFQRIQHPTVCICNTIIKAF LINGNLNSTLHVFTNMLRNGLSPDNYTIPYVLKACAALRDRSSGEMVHGYSSKLGLLFDIFVGNSLIALYCVSGDMVAAR KVFDEIPSLSAVSWSLMISGYAKVGDVDSARLFFDETPEKDKGIWGAMISGYVQNNCFKEGLYLFRLMQLTDIGPDESIF VSILSACAHMGALDTGVWVHRYLNRARLPLSIRLSTSLLDMYAKCGNLDLAKRLFDSMPDRDIVCWNAMISGLAMHGDGI GALKLFSEMEKLGIKPDDITFIAVFTACSYSGMASEGLKLLDKMFSVYNMEPKSEHYGCLVDLLSRTGFFEEAMVIIRRI TNSNNGSEETLAWRAFLSACCNHGQAQLATLAAERLVRLDNHSGLYVLISNLYAASGRHADVRRVRDVMKNKRVDKAPGC SSVEIDGVVMEFIAGEKTHPQMDEIHSILEKMHLQLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Gene3D | 1 | 132 | 132 | 7.8E-14 | ||
| PANTHER | 10 | 117 | 108 | 3.0E-90 | – | |
| Pfam | 68 | 116 | 49 | 4.9E-10 | ||
| ProSiteProfiles | 69 | 103 | 35 | 9.372 | ||
| TIGRFAM | 72 | 104 | 33 | 4.8E-5 | ||
| PANTHER | 111 | 197 | 87 | 3.0E-90 | – | |
| Gene3D | 133 | 259 | 127 | 1.1E-23 | ||
| ProSiteProfiles | 139 | 169 | 31 | 7.465 | ||
| Pfam | 144 | 167 | 24 | 0.0088 | ||
| ProSiteProfiles | 170 | 200 | 31 | 9.065 | ||
| Pfam | 172 | 197 | 26 | 8.1E-5 | ||
| TIGRFAM | 172 | 196 | 25 | 5.5E-4 | ||
| PANTHER | 181 | 259 | 79 | 3.0E-90 | – | |
| ProSiteProfiles | 201 | 235 | 35 | 9.109 | ||
| Pfam | 204 | 229 | 26 | 3.8E-4 | ||
| TIGRFAM | 205 | 237 | 33 | 1.4E-6 | ||
| ProSiteProfiles | 236 | 270 | 35 | 7.015 | ||
| PANTHER | 256 | 478 | 223 | 3.0E-90 | – | |
| ProSiteProfiles | 271 | 301 | 31 | 8.331 | ||
| TIGRFAM | 276 | 304 | 29 | 1.2E-4 | ||
| Gene3D | 276 | 491 | 216 | 2.1E-37 | ||
| Pfam | 302 | 348 | 47 | 2.0E-12 | ||
| ProSiteProfiles | 302 | 336 | 35 | 12.101 | ||
| TIGRFAM | 304 | 337 | 34 | 2.6E-8 | ||
| ProSiteProfiles | 337 | 367 | 31 | 6.643 | ||
| ProSiteProfiles | 373 | 407 | 35 | 6.752 | ||
| Pfam | 376 | 400 | 25 | 0.6 | ||
| ProSiteProfiles | 409 | 439 | 31 | 5.437 | ||
| ProSiteProfiles | 442 | 476 | 35 | 5.897 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0297000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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