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LotjaGi2g1v0297800.5

Overview

Field Value
Gene ID LotjaGi2g1v0297800
Transcript ID LotjaGi2g1v0297800.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|G7JXV5|G7JXV5_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi2g1v0297800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:77244157..77249881) extracted from Lotus japonicus Gifu genome v1.2.

GAGTTTTTCATTTCCTGTCAACAGGTCTTGGATGAAGCACACAGCAGCCCTGGTTTGCATGCTGCTGCTGGACCTGGTCT TGCAGAAGAATGTGCCACTTTGGTATAGATTAATTGCTTAAGCAAAATGTATTGTTATGTGCTTGATGTTGATAATATTT GAGCTTGTATATTTGGTAATTGAGCTAAGATACTACCATGCCAGGGAAGCAGCTTTCTGGAAATGATGTATGAATATGGT AATATTATTGACATCACTATCTTATTCTTGACAGGGTGGGTGTCGAACAGGGATGGCAAAAGCTACCAATGCATATGATC TTCCTGCAAGGTTCGTATATCCCCCTCCCCTTCCTATTTTTCTGAAGTAAAAAAGTAGTTGTCTCTATTTACTGTATAGG AAGAGATCGTGCGTTTACTTTTTCTGCCTTCTGTCTGTGAGAAAAGTCACTGCGAAGAGTATCTTTAAGCTAGTGCTTGT TGCATTGATGCAAAGGTGCATTGTCATGTTGTCTTTAATCTCTTCTGAATCGTGGTTGCGTTGACATGGATTTGTAGATT ATTACATGTGCAATTGTGGATGCATGTGTATAAATGTTAAACAGCTTACAGGTTGTTTACTCTTTTCCCGTGTTTTGCTC TGAAATCAGTTATTCATGTGTGGTGCTGTTCCAATCATGTTATGTTTTGACCCATATTTCTTCTTCCTTATTTGCATGCA ACTCTCTTGACTAGAAGTTAGATTGCTAGAATTTGATTTTTGTTTTTGCCTTTATTAAATTTCCGCCAGGAAAGTTATCC ATACTGTTGGCCCAAAGTATGCGGTGAAGTACCACACTGCTGCAGAGAATGCTTTAAGTCATTGCTATCGATCTTGCCTG GAGCTTCTAGTTGAAAATGGGCTTCGAAGGTTTTTGTTTCAAATGTTACATCATTATTTTCTTCAAGCTGTTTGTTAGGG CATCTCCTATGTCGCCTCAAATATCTAAAACGTGCTTTTTAAAAATGTATTGATGCAGCATTGCTATGGGCTGTATTTAT ACTGAAGCGAAGAACTATCCCCGTGAACCAGCTGCACATGTAGCTATAAGTGAGATATTTTGTCTTCATATTTTTTCATT TTCTGCATTGATTCGAACCTGATAAATTTAATAGGTTAGCTTTATATATCTTGTAGAAATTAAACTGCCCAACTTTTGGT ATATATTACTTCTGTTTTATCTATATGATAATGATAACTAGCAGTCATGATTGCCGAAAACCAGAAAAATAATATACTGA CTTCATCTTAAATGGAAGGAAGGGAAATCTAATTGGGGGAAGCGGGAAGAGAGAAGATAGAATGACAAATCATGTTCTCA CTTCTTCAAATGGTCAATCTGTTGTGATTTGCTTAATTTTACATCTTACTAACTGGTGTTTAGATTAAAGATGGAAGAGA CGACAGGTCAGCATAAGTAGGTAAATAGATGCATGTTTAGTTGCATCTTTTGGGTATAATTCTACCATTTTGTGCAGTTT CCAAAACCTTTATTCCATTCTATTCGACCCATCCCATCCCATCGAATTCCAATTCACTCATCGTTAGATATCCAAGCCTA GACTTACTCAAGGTATTAGTCATGCACATGCTTAATACATCTATTATATGGTGTATGGTTATCTATGTCGTCAAGAACTG TTTTCTCATGCCTAATGGATAAATATATTATTATTACGCTTCTTCACCTTGTAACGTTTTATGGTTTCTTCTTATGTCTT ATTCAGGAACTGTCCGACGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTGTCTTTTGCACTACCAGCACAGCT GATACTGAGATATATAAAAGGTAAATTCTTTCTCTGTTGTTGTTAACTGCAATGTTTTAAACGAAATGAACTTCTAAAAA ATTATGCTAGTTTGTTTTGTTTGCTTATCAATATTGAAATTTGTTTTACTTATTCATCCTTACCTTTTATATTGTTTCCA TGTAGGTTGCTACCACTTTACTTTCCTCGGGATAAACATGAAGAGGCAGTGGCTTTGTCAAAGCTTCCTGCAGATGTTGG GGATGAGAATGGTGAGACCACCATAGATGAGCGTAAAATCAGAATCAAGCCTTTGCCTAAAAAAAATGTTCCAAAACCTC CTAAAGATCCAGTTGATCTTCCTGTTAGTGATGTTGGCATGGTTCGCAGGTCAGTCAATTTTATTTAGGATGATATTGGT AGGTATTAATATTTTCTTCTAGATTGCATGGTGTGTTCCACTTTGTCCAGATACTTGAATAGGTATTACCAATCTCACCA TACACAAATAGTGGACTTCACAAGATCTGATAATTTACTGTAGACTAAAATCTGTGTCCTTGAAATTTTCATTTATAATT ACTTCAGTCCTTCAGATTTCATTTTCTTACTTTAGTCCATGATATTTATGAATTCACTTTAACTTAGTCCATGCATCAAT ATAATAGTTATCTGAGACTCGCTTGGAAAAGATGTTACTAATTGACTTGACAGTTTGACAAAATATATTGGGATAAGCCA TTCAAAACCTCATTATTTCATCTTCACATGCCATTTGAAACACAGGATGGGTTCTTTTATTATTGCTCTTTTTCTTTTCA AAATGGCAAGTGAAAAATGAAATTGTCTTGTTTGATTTATTTGTCCAGTCATCTCCAATCAAACTGTCATGTTTGCAGAT ATTGATGCCACAACATCTCTAAAAGTGGTAAATCAGCCTTTCTTGTTTATTAGATAACAGGTAGATAGTGGGGCTACATT AAAGTGAGTTCATAAATGTCGGTAACTATAGTGAAAAATAAAATGTCAAGGACTAAAGTGAGAATTTAAACAAAGGTCAG ACCAGAATATGGTTTCTGTTACAACTTTACACTTCTACTCTGCTTCATCTTGTCAGCAAAATGTTCAGGGCTTGTTTGAA ATTATTATCTGTTTTTTATTTTCAAAACTTTTTTTCAATGAAGTATTAAGAATTTACTTTGAGTAGAATTTTAGAAAACA AAACAAAAGTAAAATTTGTTTGGATAAAAATAAGTTTCTAAAACAGTTTTAAAAGAATTATACATGAGATGTCGACATTG TAACAAGCTGCACGCCATATGAGATAAAAAAGGTGCTTTATTTCTAACAAGAATGCCATCAGACACAAAAACAAAAGAAC GAAAACATGTATGAGCTGTTTCTGTTTTCTTGTTTTCAGAAATGGAGTTTTGGGAACAATTCTCAAAACAGATAAGCTAA AAACATTAATTAAACATGTCTTTCTGTTCTTTTGTTTTCAATAGTCAAACAAGGCCTCATTTATCTGTTTGCCCAAACAT TTCCTGATGCTCTCCTTGTAGTTTTATATTTGGATGCAACTGTATTAATTATCATTAGTTTTATTCTCTTGGAAGATTTT TCATCATTTTTACAATTTGTACATGTGGAAATTTCCTGATTGATGTGGCTTTTATAGGACTTCATCATATTTAGATTCAT TTCTGGATCCTGCCTTCATGTCCTTGATTAAAGACCCTGATGAAAGACGTCTGGAGCAGTGGGAGAAAACTGTCCAAGCA CAAAGAGGCTGGAACTTTGCTAAATTGCTTGGATTTGGTGACCTAGGTGCACCTGCATTATCTGCTGCCGAAGAGTATTC TCTGCACTCTAGATATCTTTCTAAAGCAAATTCCTTAAATCTTTCTGAAATTGCAGAGATGAAAATTGTGTAAGTGTCCA TCTATTTAGTTACACTGAAGTTTTATGTTCTTTAAAATTTTCTTATATTCATGCATTTCTTATCCTATCAAAATTGAAAG TTTCAGATATGCATTCAGTTTGACACTAATATAAATTTATTTATGTTTTTCAGCTATCGTGGAGGGGTAGATAGTGAGGG TCGTCCTGTCATGGTTGTTGTGGGGGCTCACTTCTTGCTTAGATGTCTTGATCTGGAAAGATTTGTGCTTCATGTAGTGA AGGTGAGTCAGTTATACTCTTCACCTTGACATATTTTAGTGTTGACAACTTAAGTATGGCTAAAGTAAATTTTCATCATC TACGTATCTTTAATTTTTTTTCTCCCTTACCCTGTTCACTTCTCAAATATCTGAAAACTATCTTTGTGTCAAATTTCAGG AATTCGAGCCTATAATACAAAAGCCTTATACTATTGTCTACTTCCACTCTGCTGCATCTCTGCAGATGTAAGTTTTAAAT AATGGAGTTCCAGGATTTACAGATTAGTTTATTCTTTTATGCTATAAAGGTATGAAATATGCTATGGGTTGTCTTAGAAA AATATTTGAATGTGTAAGAGGAGAATGTGCTAACTCTAGGCTATTAATTGGTGAACTAGTTGTTTTTAACAATCAGCCTA TGGAAAATATGGCTGTCTTGCATAGTGTTTTATTTAATTGCCAAACATCTCACATTGTATCAGTAGTTCTTTTAGTAGTT GCTGGAAACATTTGCTTGGCAGTAGTTGGCTTAGTCATGTATTAGCTTGGAATCTTGAAGTTACTTAACTATATGTATTT CATCTAACTCTGTTGAGGTTGATTCTGCATTACATATCTCCATATTTAAATCAAGCAATCCTTTGGTTTGATGCATTGTG GCTTAGCTATATGCTGATGGCAGATTTGCCTGTCTAACTGATAGAGGTTTGTGAAACTGATGAAAATAAATAGTGAACGT CAACATTTTACTGTCTAATATAACTCATGTTAACTTCTAAAATTTTTAAAATGTTTTTTACAGTATGTGTTGTGTTATAG CCATGTCATGTCCTATATTTTAACAATTTGTGTATCCCCATATCCGTGTCATATTATATCCGAGTCCCTTGTCATGTTCA TGCTTTTTTAGATGAAAGCACACTTGAATTAAAGGAAAACATAGGAATAAACTGTTCCTTGAACATTGGTTAAGAATATT TTAGTTGAGCAGGTTGCTTCAAACTGTGATTATTTATAAGTAACTCCTATCTTTGGTTGCTCTAGATTTCTCTGCAATGC ATAGTAGTATGGTTTCTTAACTATTGCTTTTAACCTTTGTCCACCATTTTGTATAAATAGGCAACCAGACCTAGGTTGGA TGAAAAGATTGCAACAAATACTTGGACGGAAGCACCAACGCAACCTGCATGTGTGAACTATTTCTGTTTTCCTGATGTAT TGCTGTTACACATTTATATTATTTTCTCTGATTTCTTGGTCTGATATGCACAGGCAATATATGTCCTCCACCCAACTATT GGACTAAAAATGGCAGTATTTGCGCTTCAGTTGCTTGTGGACAATGCGGTATGTGAATATCAAGTTAGTTTTTAAAATTT TATTACCTGACTTAAACCTATTTAAGCACATCCTGTATTTGTTATTGTCATTGACGATTATCTTTTAGGTTTGGAAGAAA GTGGTTTATGTTGATAGATTACTGCAGCTCTTCAGATACGTACCTCGTGAGCAGTTGACCATCCCAGATTTTGTATTCCA GTTGAGTCTTTAAGTTTTCATGTGTTGTCATCATTTGTTTTTCCTAATGTTATTCCATAAAACATTTCATTCGATTTCTG AATGTATTTTAGATTCTATGTTATGATTTTTCTTCTTTTATTCTGATAGGCATGACTTAGAAGTGAATGGAGGAAAGGGT CTTATTGTTGATCCCAGAACAAAATACGTTTACCACAGACCATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0297800.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAAAGCTACCAATGCATATGATCTTCCTGCAAGGAAAGTTATCCATACTGTTGGCCCAAAGTATGCGGTGAAGTA CCACACTGCTGCAGAGAATGCTTTAAGTCATTGCTATCGATCTTGCCTGGAGCTTCTAGTTGAAAATGGGCTTCGAAGCA TTGCTATGGGCTGTATTTATACTGAAGCGAAGAACTATCCCCGTGAACCAGCTGCACATGTAGCTATAAGAACTGTCCGA CGGTTTCTTGAGAAGCAGAAAGACAATATAACAGCTGTTGTCTTTTGCACTACCAGCACAGCTGATACTGAGATATATAA AAGGTTGCTACCACTTTACTTTCCTCGGGATAAACATGAAGAGGCAGTGGCTTTGTCAAAGCTTCCTGCAGATGTTGGGG ATGAGAATGGTGAGACCACCATAGATGAGCGTAAAATCAGAATCAAGCCTTTGCCTAAAAAAAATGTTCCAAAACCTCCT AAAGATCCAGTTGATCTTCCTGTTAGTGATGTTGGCATGGTTCGCAGGACTTCATCATATTTAGATTCATTTCTGGATCC TGCCTTCATGTCCTTGATTAAAGACCCTGATGAAAGACGTCTGGAGCAGTGGGAGAAAACTGTCCAAGCACAAAGAGGCT GGAACTTTGCTAAATTGCTTGGATTTGGTGACCTAGGTGCACCTGCATTATCTGCTGCCGAAGAGTATTCTCTGCACTCT AGATATCTTTCTAAAGCAAATTCCTTAAATCTTTCTGAAATTGCAGAGATGAAAATTGTCTATCGTGGAGGGGTAGATAG TGAGGGTCGTCCTGTCATGGTTGTTGTGGGGGCTCACTTCTTGCTTAGATGTCTTGATCTGGAAAGATTTGTGCTTCATG TAGTGAAGGAATTCGAGCCTATAATACAAAAGCCTTATACTATTGTCTACTTCCACTCTGCTGCATCTCTGCAGATGCAA CCAGACCTAGGTTGGATGAAAAGATTGCAACAAATACTTGGACGGAAGCACCAACGCAACCTGCATGCAATATATGTCCT CCACCCAACTATTGGACTAAAAATGGCAGTATTTGCGCTTCAGTTGCTTGTGGACAATGCGGTTTGGAAGAAAGTGGTTT ATGTTGATAGATTACTGCAGCTCTTCAGATACGTACCTCGTGAGCAGTTGACCATCCCAGATTTTGTATTCCAGCATGAC TTAGAAGTGAATGGAGGAAAGGGTCTTATTGTTGATCCCAGAACAAAATACGTTTACCACAGACCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0297800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKATNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLVENGLRSIAMGCIYTEAKNYPREPAAHVAIRTVR RFLEKQKDNITAVVFCTTSTADTEIYKRLLPLYFPRDKHEEAVALSKLPADVGDENGETTIDERKIRIKPLPKKNVPKPP KDPVDLPVSDVGMVRRTSSYLDSFLDPAFMSLIKDPDERRLEQWEKTVQAQRGWNFAKLLGFGDLGAPALSAAEEYSLHS RYLSKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEPIIQKPYTIVYFHSAASLQMQ PDLGWMKRLQQILGRKHQRNLHAIYVLHPTIGLKMAVFALQLLVDNAVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHD LEVNGGKGLIVDPRTKYVYHRP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11106
1 422 422 8.1E-265 –
ProSiteProfiles
PS51154
1 114 114 16.232
IPR002589
Gene3D
G3DSA:3.40.220.10
1 119 119 1.5E-44
IPR043472
PANTHER
PTHR11106:SF105
1 422 422 8.1E-265 –
SUPERFAMILY
SSF52949
2 143 142 5.1E-31
IPR043472
Pfam
PF01661
2 75 74 6.2E-17
IPR002589
MobiDBLite
mobidb-lite
149 168 20 - –
ProSiteProfiles
PS50191
247 396 150 8.061
IPR001251
SUPERFAMILY
SSF52087
251 390 140 1.05E-16
IPR036865
Gene3D
G3DSA:3.40.525.10
252 404 153 5.2E-40
IPR036865
SMART
SM00516
253 399 147 9.2E-8
IPR001251
CDD
cd00170
257 393 137 9.40801E-23
IPR001251
Pfam
PF13716
269 400 132 1.3E-30
IPR001251

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0297800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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