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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0299900 |
| Transcript ID | LotjaGi2g1v0299900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0299900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77426816..77428324) extracted from Lotus japonicus Gifu genome v1.2.
CAACTTTCACATAAATTGATTCCAACTACTTCTTCATTCATTTCATTTCTTGTAGCTGCTTCCACTCTCACTCTCGCAAA TGGCGCTTCCGCTTCCATCTCTTCCGTTCGACCTCATCGTCGAAATCCTCTGCCGGCTCCCGGTGAAGCCACTGCTGCGA TTCCGCTCCGTTTCCAAATCCTGGAATTCCCTAATCTCCGATCCCAAATTCGCCAAAATGCACCGTCGCTGTTCGCCGCC GGACTTCACCCGCCACCACCTCATCTTAGGCCACACCAACTCCTCAAACGATTTCCTCCTCACGGATTATCCGCTCCTCT CCGTTTTCAACGCCGCCGTGCCTGCCGCCGCCACTCAGCTCGACTACCCTCTCAACAATCCCTACCGTTTTGATTCAATC GTTGGCTCTTGCGATGGAATCCTCTGTTTATCCATCGATCAAAGTCGCTCTGCTGTTGTATGGAACCCTTCCACTCGGAT ATTCAAAAACTTGCCGCCATTGGAGAATCCACAGCTTCAAGGTAGTTGCACATTATTCGGATTTGGTTATGATAATCTTG CTGATCGTTACAAAGTAGTTGCTGTTTTCTGCTATAAAACTGTTACTGGGGGTTACAGAAAATATAAAACTGATGATGGT GAGTTTTATAAAACACTGGTTAGGGTTCATACTTTGGGTACAAATTCTTGGAGGGAGATTCAAGAGTTCCCTTTGTGTGT CCCTTTTTGTCGTCAAACAGGAAGATTTGTGAGTGGAACTGTTAATTGGTCTGCATCTAATGAGTCGAGCTGGTTTATTA TTTCTCTTGATTTGGGGAAGGAGAGTTATCGAAAGCTTTCGCCCCCGGATTGCGGTGGAGTGGTTTGGTCTTTGGAGGTT TTAAGGGATTGCTTGTGCATCCTTTATGGCGATTACGATGTTTGTGATGTTTGGCTTATGAAGGAGTATGGTAATGAAGA GTCTTGGACTAAATTATTCAGTGCTCCTAGCCCGAGGGAGCTATTTGCCTATGATTGGGCACTGCATATTACTGAGGATG ATGAGGTGCTGCTGATGTTCGATTCAAAGTTTTTTCTCTACAATTTCAGAGACAACACTTTAACAAGTCCCCAAATTCAA AACATCCTTGGTTGGATAGTCCCAGAGGTCTATGTAGAAAGTTTGATATCGCCTTAACCTGGATACTACGATGTAAATAC TGTTGATAAGCAGTGCATTTTATAGTTGATAATAGCCTTAATAGAGTTGATAGGCAGGCATTAATATAGTTGTTAAGCAT TACATTATATAGTTGCAATAGCCTTCATTATAGCAATTACCATTTGATTAGAACATAGGATTGCTGCAGACTTACTTCTA TGTTCTAAGTTTGATTGTATAACCCCTTACTCTGATAGTTTGAGGGTTAATTACTTTGGTTGTAAGTTGCTCCTGCTAGT AGCAAAGCATTGTCGGCTACATTATTGATTATATATGAAATAATTTGTTTTATTTTCTTGTATTCAAAA
CDS sequence (LotjaGi2g1v0299900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTTCCGCTTCCATCTCTTCCGTTCGACCTCATCGTCGAAATCCTCTGCCGGCTCCCGGTGAAGCCACTGCTGCG ATTCCGCTCCGTTTCCAAATCCTGGAATTCCCTAATCTCCGATCCCAAATTCGCCAAAATGCACCGTCGCTGTTCGCCGC CGGACTTCACCCGCCACCACCTCATCTTAGGCCACACCAACTCCTCAAACGATTTCCTCCTCACGGATTATCCGCTCCTC TCCGTTTTCAACGCCGCCGTGCCTGCCGCCGCCACTCAGCTCGACTACCCTCTCAACAATCCCTACCGTTTTGATTCAAT CGTTGGCTCTTGCGATGGAATCCTCTGTTTATCCATCGATCAAAGTCGCTCTGCTGTTGTATGGAACCCTTCCACTCGGA TATTCAAAAACTTGCCGCCATTGGAGAATCCACAGCTTCAAGGTAGTTGCACATTATTCGGATTTGGTTATGATAATCTT GCTGATCGTTACAAAGTAGTTGCTGTTTTCTGCTATAAAACTGTTACTGGGGGTTACAGAAAATATAAAACTGATGATGG TGAGTTTTATAAAACACTGGTTAGGGTTCATACTTTGGGTACAAATTCTTGGAGGGAGATTCAAGAGTTCCCTTTGTGTG TCCCTTTTTGTCGTCAAACAGGAAGATTTGTGAGTGGAACTGTTAATTGGTCTGCATCTAATGAGTCGAGCTGGTTTATT ATTTCTCTTGATTTGGGGAAGGAGAGTTATCGAAAGCTTTCGCCCCCGGATTGCGGTGGAGTGGTTTGGTCTTTGGAGGT TTTAAGGGATTGCTTGTGCATCCTTTATGGCGATTACGATGTTTGTGATGTTTGGCTTATGAAGGAGTATGGTAATGAAG AGTCTTGGACTAAATTATTCAGTGCTCCTAGCCCGAGGGAGCTATTTGCCTATGATTGGGCACTGCATATTACTGAGGAT GATGAGGTGCTGCTGATGTTCGATTCAAAGTTTTTTCTCTACAATTTCAGAGACAACACTTTAACAAGTCCCCAAATTCA AAACATCCTTGGTTGGATAGTCCCAGAGGTCTATGTAGAAAGTTTGATATCGCCTTAA
Protein sequence (LotjaGi2g1v0299900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALPLPSLPFDLIVEILCRLPVKPLLRFRSVSKSWNSLISDPKFAKMHRRCSPPDFTRHHLILGHTNSSNDFLLTDYPLL SVFNAAVPAAATQLDYPLNNPYRFDSIVGSCDGILCLSIDQSRSAVVWNPSTRIFKNLPPLENPQLQGSCTLFGFGYDNL ADRYKVVAVFCYKTVTGGYRKYKTDDGEFYKTLVRVHTLGTNSWREIQEFPLCVPFCRQTGRFVSGTVNWSASNESSWFI ISLDLGKESYRKLSPPDCGGVVWSLEVLRDCLCILYGDYDVCDVWLMKEYGNEESWTKLFSAPSPRELFAYDWALHITED DEVLLMFDSKFFLYNFRDNTLTSPQIQNILGWIVPEVYVESLISP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 47 | 46 | 11.67 | ||
| Pfam | 4 | 44 | 41 | 2.6E-10 | ||
| PANTHER | 5 | 348 | 344 | 2.3E-65 | – | |
| PANTHER | 5 | 348 | 344 | 2.3E-65 | – | |
| SUPERFAMILY | 5 | 70 | 66 | 1.31E-14 | ||
| Gene3D | 6 | 44 | 39 | 8.2E-8 | – | |
| SMART | 8 | 47 | 40 | 8.4E-8 | ||
| SUPERFAMILY | 52 | 342 | 291 | 5.89E-6 | ||
| TIGRFAM | 109 | 339 | 231 | 9.8E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0299900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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