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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0300000 |
| Transcript ID | LotjaGi2g1v0300000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi2g1v0300000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77436413..77438965) extracted from Lotus japonicus Gifu genome v1.2.
CTAATCATGTCTCCTTTATCCAGACCACAAAAGTGCATATAAATTGATTTTGCTGCAACCGCGTCTTCATTCATCTAGCT GTTGCTGCCGCCGCTCATCAATGGCGCGAATACGGACACGACCGCGGTTACTTCCTTCCTCTTCCAACCCTCCCGGTGAC TCGCCGCCGTTTCCAACTCTTCCGTTCGAACTTGGAGTGGAAATCCTATGCAGGCTCCCAGTGAAATCGCTGTTGCAACT CCGCTGCGTTTGCAAGTCCTGGAAATCGCTAATCTCCGATCCCAAATTCGCCAAAAACCACCTCCGCTGTTCGTCGACGG ACTTCACCCGCCACCGCCTCTTCTTAAGCTACAACACCCTCCCAGGCGACAGATTCAAATTCCTTCTCAAGGATTACCCG CTCCTCTCCGTTTTCAACGCCGCCATGCCTGCCCCCGCCACAGAGCTAGGTTACCCTCTGAGTAACATTTTCAATTTCGT CATGGATTTTTGCCATGGCATCATCATGGTGTGCTTCAATTATAAGAGATGTATTCTTCTATGGAACCCTTCTACTCGGA TATTCAAAGAGTTGCCGCGTTTGAGAAATCGACCCCTAGTAGGTACTTTCATAACATACGGGTTTGGTTACGATAATCTT GCTGATAGATACAAAGTAGTTGCTGTTCTCTGCTATGAAACTGATTCTGATACTGGGGGTTACAAGAAAAACAAAACTGA TGCTGAGTTTTACAGAACACAAGTCCAGGTTCATACTTTAGGTACTCATGCTTGGAGGGAGATTCAAGACTTCCCTTCAT GTGTCCCTTTCACTGGAACAGGAAAATTTCTGAATGGCACTCTTAATTGGTTGGTTTCTCATGAGTCCAATTGGTTTATT AATTCTCTTAATTTGGGGAAAGAGAGTTATCAAAAGATTTTGCCTCCTGATGATGGAAATGAGCCTGAGAATTTTTTGGG GGTGTTGAAGGATTGCTTGTGCGTCCTGTGTGGAGATGCCCTGGTTTGGAATGTTTGGCTTATGAAGGAGTATGGAAATC AGAACTCTTGGACTAAACTATTCAGTGTTGCGACGGAACTATTGCCCCATTACAAAGGACTTCGTGCAATTCATATTTCT GAGGATGATCAAGTACTGGTGGTGAAGTTCTGTTCAGAGTTATTTCTTTACAATTCCAGAGATGGCACTTTGAAAAGTCT CCAAATACAAATTCCAGATGGTTGTATTTCTCTGTTCTCAGGGGCCTATGTAGAAAGTTTGATATCACCTTGCTTTTGAT ATTGGGATGTAAAATGGTATGTCTGAAGAATCCTTCGATCCATGAACTGGTTCTTAGTACCTTACATGTTTTCATTTCAT GTTTGTTCTAATTATTTTGATCATTGTTTATTGAAATCATGCATTTCATTAGGTGGTCAATTTAGTTTTCTCAAATTGGA ATAAGATCTGGATGTGATGCCAAGTCACTAGTATGCTTATTTAAATGTCACTTAACTGCTCACAAAATTCATTTTTGCTT CAAATCTTGCATAATACATTATGCACTAAACAAACTAAATCTTATCATGCACATAATTCTTAATGAGCCTATGATATAGT TTTTTTTTTTTTCCTTTTTGGGCATAAGTTCATAATAATACCATGAGAACTTGTTTGGTGTTTTTGAATCACTAAAATAG ACATACACCTTTCAGTTGATTGAAACATCTTTTACTGTGGTTGTTGTTTGTGTTGTATTTGGGTTATGTTGTTTTGGTAA GGGTGTGGTTGGCGTCTTAGATGGGAGAGTTTGTTCCCATCATTCTTTCATTCAATAAAATTTGTTCTGCTGTCAAAATA AATTTTTACACAAAAAGTCCCTTTCTTCATGCCATCTTCTTGTGTTTCTTATTGTATCCTTTCGCCAGAAATTCTACACA AATATCTACCTCTAGAGGTACTTGTTTGCACTTTGTAATTACTAGTAACTGACTAGGAGCTTCTGTTATGAATTTTCAAG TATTTTTCAGGTGGGACAGTGGGAACTCATTTCTGAAGTATATTTTTTGTGATGACCAAGAGTAGTGGAAGATGTGACAG CAAGGAAGTTGATACTAGCTGGGAAGACACAAAGTGAATTATATGTTTTTTTTCTTATATTTCATACCAAAGCTATTGTG ACAATATGCCAGTTATCCTATTTCTCTTCAATACTAGTTAAGGATCCTTGAATGCCTTTTGTTTGAAACTATAAAGTTTT CTTCCATTTATATCTTAGACTGGTTTGTTTGGTATCTAGAAATAATTTAATGAGAGGGGATTATGGATTGATGGACAGAC CAATGGCCTGCATTTTAAGCAGTGTATTGTATCTTGATAATAACCTTTATATCAATTACCATCTGATTAGAATATTGATA TGCTTCAGACATACTTCTAAGTCAGATTGTGTAACCTTTACTCTGATAATTTGTGAGTTACTTGGTTTGTAAGTTGCTCT TACTTTGCTAAATACCAGGAAAGCCAGGGGAACTGGATTACAGAAATCATTGAATGTTTATCTCTCATTCTTG
CDS sequence (LotjaGi2g1v0300000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCGAATACGGACACGACCGCGGTTACTTCCTTCCTCTTCCAACCCTCCCGGTGACTCGCCGCCGTTTCCAACTCT TCCGTTCGAACTTGGAGTGGAAATCCTATGCAGGCTCCCAGTGAAATCGCTGTTGCAACTCCGCTGCGTTTGCAAGTCCT GGAAATCGCTAATCTCCGATCCCAAATTCGCCAAAAACCACCTCCGCTGTTCGTCGACGGACTTCACCCGCCACCGCCTC TTCTTAAGCTACAACACCCTCCCAGGCGACAGATTCAAATTCCTTCTCAAGGATTACCCGCTCCTCTCCGTTTTCAACGC CGCCATGCCTGCCCCCGCCACAGAGCTAGGTTACCCTCTGAGTAACATTTTCAATTTCGTCATGGATTTTTGCCATGGCA TCATCATGGTGTGCTTCAATTATAAGAGATGTATTCTTCTATGGAACCCTTCTACTCGGATATTCAAAGAGTTGCCGCGT TTGAGAAATCGACCCCTAGTAGGTACTTTCATAACATACGGGTTTGGTTACGATAATCTTGCTGATAGATACAAAGTAGT TGCTGTTCTCTGCTATGAAACTGATTCTGATACTGGGGGTTACAAGAAAAACAAAACTGATGCTGAGTTTTACAGAACAC AAGTCCAGGTTCATACTTTAGGTACTCATGCTTGGAGGGAGATTCAAGACTTCCCTTCATGTGTCCCTTTCACTGGAACA GGAAAATTTCTGAATGGCACTCTTAATTGGTTGGTTTCTCATGAGTCCAATTGGTTTATTAATTCTCTTAATTTGGGGAA AGAGAGTTATCAAAAGATTTTGCCTCCTGATGATGGAAATGAGCCTGAGAATTTTTTGGGGGTGTTGAAGGATTGCTTGT GCGTCCTGTGTGGAGATGCCCTGGTTTGGAATGTTTGGCTTATGAAGGAGTATGGAAATCAGAACTCTTGGACTAAACTA TTCAGTGTTGCGACGGAACTATTGCCCCATTACAAAGGACTTCGTGCAATTCATATTTCTGAGGATGATCAAGTACTGGT GGTGAAGTTCTGTTCAGAGTTATTTCTTTACAATTCCAGAGATGGCACTTTGAAAAGTCTCCAAATACAAATTCCAGATG GTTGTATTTCTCTGTTCTCAGGGGCCTATGTAGAAAGTTTGATATCACCTTGCTTTTGA
Protein sequence (LotjaGi2g1v0300000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARIRTRPRLLPSSSNPPGDSPPFPTLPFELGVEILCRLPVKSLLQLRCVCKSWKSLISDPKFAKNHLRCSSTDFTRHRL FLSYNTLPGDRFKFLLKDYPLLSVFNAAMPAPATELGYPLSNIFNFVMDFCHGIIMVCFNYKRCILLWNPSTRIFKELPR LRNRPLVGTFITYGFGYDNLADRYKVVAVLCYETDSDTGGYKKNKTDAEFYRTQVQVHTLGTHAWREIQDFPSCVPFTGT GKFLNGTLNWLVSHESNWFINSLNLGKESYQKILPPDDGNEPENFLGVLKDCLCVLCGDALVWNVWLMKEYGNQNSWTKL FSVATELLPHYKGLRAIHISEDDQVLVVKFCSELFLYNSRDGTLKSLQIQIPDGCISLFSGAYVESLISPCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Gene3D | 12 | 96 | 85 | 1.1E-9 | – | |
| SUPERFAMILY | 16 | 149 | 134 | 3.53E-17 | ||
| ProSiteProfiles | 21 | 67 | 47 | 10.743 | ||
| Pfam | 23 | 66 | 44 | 6.2E-11 | ||
| PANTHER | 24 | 371 | 348 | 1.9E-60 | – | |
| PANTHER | 24 | 371 | 348 | 1.9E-60 | – | |
| SMART | 27 | 67 | 41 | 9.2E-10 | ||
| TIGRFAM | 130 | 358 | 229 | 7.4E-34 | ||
| Pfam | 243 | 348 | 106 | 9.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0300000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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