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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0300600 |
| Transcript ID | LotjaGi2g1v0300600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|A0A0S3T1H5|A0A0S3T1H5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77486410..77488191) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAAGCCAAACGAATCAGAAACACACTTGTTTCAATTCTTCTCAGCACACAATCATGTTTGGATTAAACCCTGAACCC CATTTGCTATTTCTCCTTCTAGTTTTGGGATTGCTTTCACATTCAGTTCAATCCATAAGGTTCGAAGTGCAATCTGATCA TTTCAAATGCATCACCGAAGACATAAGGTCCAAATCCTTGACAGTGGGAAACTACAGCATCGCCAATCCCAATCAGGGTC AACCCTTACCTGAATCCCACAAACTCATCGTTCGGGTACCATGTTCGATCTACATCACTTGAAAGAAGAAAAAAATAATC CAATCTTTTTTAATGCCCATTGTTCAATTTTTGTGCTTGATTATTGTAGTGATAAATTTGATTCTAGGGTTGTGAATTTT GATTTGTTGTTATGTTAGGTGCTTTCTCCAAGTGGGAAAGTGAATCACCTTGGGGATCATATTCAATCTGGGCAGTTTGC ATTCCAGACAGTGGAAGCTGGTAACTACATAGCATGTTTTATAGTTGCCGAGGATAAAGATAAACACGATCCCCATATAA CTCTCTCCGTTGATTTTGATTGGAAGTCGGGTGTGGCTGCTAGGGAATGGACCAATGTTGCTAAGAAAACAAATGTTGAT GTAAGTTAAATACTAGTACTGAATTATATGAATCATGATAAGAAATAGGATGAATTCCTCAAGCTCTTTACTAGCAATTC TTACCTGCATAACATAGTCAATTTAACCTTAAAAAATGCAATTTCTAGGTCAATGGCCATGTAACTCTTCCCTCCCCTTC ATTTCACCACACATGTGTGGTGCTTTCTCATATTGCTCTTATTAGGGTTTGATTACACTTGATTGTAGGTGTCCTTTGGC ATGACTTCTGCATCTAATTTATGTTAGAAATATAACTAATCATATTTTCACTACCCAACAACTTAAGCTTTTGGAATAAT TAGTTCATGACATGGTATTATAGCCTTTATGATTAAGGGCTAAAGAGTTCAATCATTACTGCCTCTAATTCTTCATGACA TGTATGAGTAGTCTTTGCCAACTTCGTGTTCAATGAAAGAGGAAAAATATTCTTAAATGATGTCTCATATGTGTGACAGG CAATGGCATCAAGTGTAATGAATTTGCTGGAAACTGCCTCTTCCATTCATGCAGAGATGTCTTACCTTCGATATCGGTAA GCCATCATATTTCTTCGTGTCTTCTTAATTCAATTTTCAAGTGCAGTATTCTTATTATTATTATTATGAACCATTTTTCT TTCAGAGAAGATGAAAACCAAATGTTCAGCTGGGAAACCAACACCAGAATGTTCTGGTTGAGTTTGGTCTCACTTGTTGT TAGCTTCTCAGTAGCAGGGTTGCAGCTATGGCACTTGAAGACCTTTTTTGAGAAAAATAAAATCATAATTTTTTTCTGAT AGTTTATGCACCCCTGTAAAATATACTGACATCAATTTATAAGATACTCTATGGGGGATTTTAAATTCTCTAGGATCATT CCCTTTTATTAATGGCAAAAGAGTTTCCATGGAAAATAAATTTTACATAATGGATGATTTGAGGGGAATGGAGGAGAGGG GAGATATTTTTTTAAACTTATCTGGTATTTCTGGATATTCTAATGCTCCAGGAATTTATGAATTGAACAAGCTCCAGTGA TGATCTGAAGGTAAATTTTCTTTGATCTTTTCAAGCCGTTTAAGGATATCTATGAAGGAAGGTCTTTGATTCATGTCAGC ATCCCAACATTGCTCTGTTAAC
CDS sequence (LotjaGi2g1v0300600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGATTAAACCCTGAACCCCATTTGCTATTTCTCCTTCTAGTTTTGGGATTGCTTTCACATTCAGTTCAATCCAT AAGGTTCGAAGTGCAATCTGATCATTTCAAATGCATCACCGAAGACATAAGGTCCAAATCCTTGACAGTGGGAAACTACA GCATCGCCAATCCCAATCAGGGTCAACCCTTACCTGAATCCCACAAACTCATCGTTCGGGTGCTTTCTCCAAGTGGGAAA GTGAATCACCTTGGGGATCATATTCAATCTGGGCAGTTTGCATTCCAGACAGTGGAAGCTGGTAACTACATAGCATGTTT TATAGTTGCCGAGGATAAAGATAAACACGATCCCCATATAACTCTCTCCGTTGATTTTGATTGGAAGTCGGGTGTGGCTG CTAGGGAATGGACCAATGTTGCTAAGAAAACAAATGTTGATGCAATGGCATCAAGTGTAATGAATTTGCTGGAAACTGCC TCTTCCATTCATGCAGAGATGTCTTACCTTCGATATCGAGAAGATGAAAACCAAATGTTCAGCTGGGAAACCAACACCAG AATGTTCTGGTTGAGTTTGGTCTCACTTGTTGTTAGCTTCTCAGTAGCAGGGTTGCAGCTATGGCACTTGAAGACCTTTT TTGAGAAAAATAAAATCATAATTTTTTTCTGA
Protein sequence (LotjaGi2g1v0300600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGLNPEPHLLFLLLVLGLLSHSVQSIRFEVQSDHFKCITEDIRSKSLTVGNYSIANPNQGQPLPESHKLIVRVLSPSGK VNHLGDHIQSGQFAFQTVEAGNYIACFIVAEDKDKHDPHITLSVDFDWKSGVAAREWTNVAKKTNVDAMASSVMNLLETA SSIHAEMSYLRYREDENQMFSWETNTRMFWLSLVSLVVSFSVAGLQLWHLKTFFEKNKIIIFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 11 | 220 | 210 | 1.4E-86 | – | |
| PANTHER | 11 | 220 | 210 | 1.4E-86 | ||
| Phobius | 22 | 26 | 5 | - | – | |
| SMART | 26 | 215 | 190 | 1.4E-36 | ||
| Pfam | 27 | 215 | 189 | 1.3E-37 | ||
| Phobius | 27 | 187 | 161 | - | – | |
| ProSiteProfiles | 36 | 130 | 95 | 9.945 | ||
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 188 | 208 | 21 | - | – | |
| Phobius | 209 | 223 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0300600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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