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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0300700 |
| Transcript ID | LotjaGi2g1v0300700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|I1KMF6|I1KMF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77489352..77491598) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATATACGCGATTCACTTCCTTTTCATTCTTCTTCTTGTCAGCACACAATCATGTTTAGCTTAAACCCACAACCCCA TTTGCTAATTTTCCTTCTAGTTCTGGTACTGTTTTCACATTCATCAGTTCAATCCCTGAGGTTTGAAGTGCAATCTGGTG GAGCCAGATGCATCTCCGAAGACATGAGGCCCAATTCCATGACAGTGGGAAACTATAGCATTGCCAATCCCAATGAGGGT CACCCCTTACCTGAATCACACAAACTCATTGTTCGGGTACCAAAAATTCTAAACTCTTTGTTCAATTTATGTGCTTGAAT ATTGGAGTTGTGAATTTAAATTTGATTTGTTGTTAATTGTTAGTTGGTTTCGCCTGGTGAGGAATTGGGTCACTTTGGAG ATCATGTTCAATCAGGGCAATTTGCATTTGAGGCAGTGGAGACTGGTAACTACATTATATGTTTTTGGGGTGCAGATCAC AATCCCAAGGTAACTTTCTCTGTTGATTTTGAATGGAGGTCGGGTGTGCCAACCAAGGATTGGAATGTTGCTAAGAAAAC CAACATTGATGTAAGTCAAATGATTGCAATTTTTAGTTCAATAAGGAATCTAGCATAATTTAACATGTGCCTTAGCTTTT GTTAGTGCATATGTGGTGCTCTGTCCTATTGTTTTCATTAGAGTTTGATTGCCATTGATTTGTATGTGTCGTGTGATTTG GTATTTCTTCCGATGTACCTAAAAAGAAACCAATAATTTGATATCTAATTTCCATTAACAAAAACAATCAGATAAACAGC ATGTAGTATGTTTTGAGTTTTTCTATTGATTGTGTTTGTAAAATAATAGTCCAACTCACTCTCAGTTGGTCCCAACTTAA TCGAATTTTATAAGTTTAGTTTATAGGATAAGACTTATACACGTGTTTGTGTAATTGGATGAGAATAGATTATGACTTAA TTATAAGTTGTTTTGAACTTATATTCATAAATACCTACCCTAAGTTGTCAATATCGGCGGGATGTCGAGGGATCCCGAGT TCCCATCTCAGCCATGCCTTGGGATGAATTTTTCAATCCCTGCTTAGTTCATTGTCCCCGCCATCCAGCTGGGATCCCGA CCTCCTGTCAGGATGGTGAAGGCCCCAATATTCCAAAAATATGCAAACGTTGGAGGTTTTATTTAGAGGTATTTTTTTTG TTTTCGCAACGGAAAAAACCCTAGCAATTTGATTTTGTTCAATATTTTCCTCTCTTCTACCCACTTCAACCCTCTTCTCC TATGCTCTACCTTTGCGCCTTCTCTCTCTTCGACCCATAACCGACCGACAACGACCACGATAAGACCTTTGACCTTTCTC CAATGAGTGTCACTTCTATACTACCAACTTCGACTCTCTTCTCCTATGTTCTATCATGTATTTATCATTGATTTAGTATG TATATATGGTACAACTAATATAAAACATAGATTAACTTTCACTATCCTGACCATCCCGCTTTCTGGGATCCCTCTATCCC AGTTTTGAAGTCAATCGCAACGAGCTGAGAATTGGGATTGACAACATAGTACCTACCTATGTGTTACTTTGAGCTTTTTT AATTTCACCGAGCTTGTCAATTAAACTTATGAATAAATGTTATGTAATCAGCGTTATTACCATAAACACTTACTTCAATC CAAACGCACCATTTGTAGATGTATTGGTAATCTTTGCTAAATGCGTGTTCAATGAAAGAAAAAGATATTCTTAAACCATT TGTCTCACATGTGTTACAGGCAATGACATCAAGTGTAATGGATTTGCAGAACACGGTCTCTTCCATTCATGAAGAGATGT TTTATCTTCGACTTCGGTAAGCTATCACATTTGTTTGTGTCTTCTTAATTCAGTTTTCAAGTGCAGTGTTCTTAAATGTA CAATTTTTCTTTCAGACAAGATGAAAATCAAGAGTTCAACTGGGCAACCAACACCAGAATGTTCTGGTTGAGTTTGCTCT CACTTTTTGTCTGCTTCTCAGTAGCAGGGTTGCAACTATGGCACTTGAAGACCTTTTTTGAGAAAAAGAAAATCATATAA TTTTTTTTTGTCATACACTATGGGGGCCTCTAAATTATCTAGGAAGACTAGGATTATTCCTTTTTATTATTGGAAAAATG GTTTCCATAGCAAATAAATTTTAAGGATTGTTAATGTTCTCTTAAAAAACAAGTTAAAATCAACAAATATCCCCTGATAG ATTATTT
CDS sequence (LotjaGi2g1v0300700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAGCTTAAACCCACAACCCCATTTGCTAATTTTCCTTCTAGTTCTGGTACTGTTTTCACATTCATCAGTTCAATC CCTGAGGTTTGAAGTGCAATCTGGTGGAGCCAGATGCATCTCCGAAGACATGAGGCCCAATTCCATGACAGTGGGAAACT ATAGCATTGCCAATCCCAATGAGGGTCACCCCTTACCTGAATCACACAAACTCATTGTTCGGTTGGTTTCGCCTGGTGAG GAATTGGGTCACTTTGGAGATCATGTTCAATCAGGGCAATTTGCATTTGAGGCAGTGGAGACTGGTAACTACATTATATG TTTTTGGGGTGCAGATCACAATCCCAAGGTAACTTTCTCTGTTGATTTTGAATGGAGGTCGGGTGTGCCAACCAAGGATT GGAATGTTGCTAAGAAAACCAACATTGATGCAATGACATCAAGTGTAATGGATTTGCAGAACACGGTCTCTTCCATTCAT GAAGAGATGTTTTATCTTCGACTTCGACAAGATGAAAATCAAGAGTTCAACTGGGCAACCAACACCAGAATGTTCTGGTT GAGTTTGCTCTCACTTTTTGTCTGCTTCTCAGTAGCAGGGTTGCAACTATGGCACTTGAAGACCTTTTTTGAGAAAAAGA AAATCATATAA
Protein sequence (LotjaGi2g1v0300700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSLNPQPHLLIFLLVLVLFSHSSVQSLRFEVQSGGARCISEDMRPNSMTVGNYSIANPNEGHPLPESHKLIVRLVSPGE ELGHFGDHVQSGQFAFEAVETGNYIICFWGADHNPKVTFSVDFEWRSGVPTKDWNVAKKTNIDAMTSSVMDLQNTVSSIH EEMFYLRLRQDENQEFNWATNTRMFWLSLLSLFVCFSVAGLQLWHLKTFFEKKKII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| TMHMM | 10 | 28 | 19 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| PANTHER | 11 | 216 | 206 | 8.0E-87 | ||
| PANTHER | 11 | 216 | 206 | 8.0E-87 | – | |
| Phobius | 21 | 27 | 7 | - | – | |
| Pfam | 27 | 211 | 185 | 4.3E-38 | ||
| SMART | 27 | 211 | 185 | 6.3E-39 | ||
| Phobius | 28 | 183 | 156 | - | – | |
| ProSiteProfiles | 37 | 170 | 134 | 11.975 | ||
| Phobius | 184 | 204 | 21 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 205 | 216 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0300700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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