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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0302100 |
| Transcript ID | LotjaGi2g1v0302100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G69560.1 myb domain protein 105; Swiss-Prot: sp|Q6R053|MYB56_ARATH Transcription factor MYB56; TrEMBL-Plants: tr|V7CJS2|V7CJS2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0302100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77620206..77622795) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGGGGCTGCCCCCACCTCTCTAAATAGTACTCATGGTAAATGAGTGAGTGAGAGTGAAAGAAACAACCGTGTAGCAA TTCCAGTTTCTGTTTATGTTCAAGGCTTGAAAAAAGCACTTATTGCTCTCTTTGCTGCAAACCCTTTTCTTCTTCACCTT CACTGCCTGTCAATCTTTGCTTCTCATGTTATTACATTACATGATCTCAATATATGAGCATCATGTCATGGTGATGACAG TTCTTCATGACCAACATTTGTCAGAAAGGAAATGAGAAGTCATGGCCAGCAAGTGCTATACAATCTCTTCACAAGAAAAT CAAAATGGTTACCCTTTTTCCTCTTCCTGTTCTACTTCTTCCTTCCCATCCCCTTCAATGGGAATGGTGTATGCAGACAT GGTATCACTCTCTCTTAACTCCAACTTTTCAAATGTTTCTTCATCTCAAGAGAGTAACCATGCCTGCAAGGGCTCTGGAT TGGAAACTGGGAGTACAAACTGGACTTTTCCATTCATGAGAGAGTGCCTTCCCAGAAGCTTTGAAGAAGAAAACCCCAAC ATGGATGATGTGGAGGCAAAAAGTTCTGATTGCAGTGATGAGGCTGGGGAAACAAACCACAATGCTGACTTCAATGAAGA GAACCCTAATGAAAACCCTTCCATTTGCAAAGAAGGAGATAGTGGACAATCCAAACTGTGTGCAAGAGGGCATTGGAGGC CTGCAGAAGATTCCAAGCTCAAGGAACTTGTTGCTCTTTATGGTCCCCAAAATTGGAACTTGATAGCTGAAAAGTTGGAA GGAAGATCAGGTATCAAAAATGGTTGTTCTTTATGTTTGAATCTGGTTTTCTTTTATTATAATTAATTCTGAAATTTAGA AGCTGCTCATAGAAGTTTTTACTCATAATTAATTTTGACTTCAGAATTAATTGTATAATGTTCCTAAACATGCATTCCAC TCAGTCTTCTAATTAATTCTGTAAATTATATTCTTTTGTTTTCTCTTTTGGTGTGGTGCATTTTATGAATGAGATGAGTA TGTTTGGTTTTCCCTTAACTTCCTTTGATGTTTCATTTTTTCGGGGCATTTTGTATTTGAAGGGAAGAGTTGTAGGCTGA GATGGTTCAACCAGCTTGATCCAAGGATTAACAGGAGGGCTTTCAGTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACAT AGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTTCCTGGAAGAACAGATAATGCTGTGAAGAATCACTGGCA TGTTATCATGGCTAGGAAATATAGGGAACAATCCAATGCTTACAGGAGGAGAAGGCTCAACAACCAATCGGTTCACAAAA GAACAACTGATCATCAGCAAAATCAAACCCTTGCTTGCAGATCAGATTCCACAACAGAGTTAACAGAACATCATGCATCA TCACACTACCTTCTCAATGGATCAGTCCTCAACAATAACAACATGGCTGTTGAATTAACAACCCACATGAGTGGTTCTGG AAGCAGAAACCAAGCCCCCCCACATGTTGGCTTCTATGCTCAACAGTCACCATTTGATTTCTTCTCTGGTGTGTCTTTTT TTCTCTCTTGCATTCTTCTCTCAATCCATATCTCTTTCTTACTATTGCTTTTTCCATGTTAATACACATTTATATCAAGT TAAAATCTTTCTTTTCATCTACTTATTGATTTGTAACTGTGACTGATGTAACCGTTCTTTCTCATCCCCACTCACACTCA TGAAAAATCACAGTGAGTTAAAATCACGGTAGACTGAAACAACTTGCACTATCATTTGGAATTATTTACTGTAATTTTGA CTTCACCGCCCCTTCAAACATCCTCTTTGTGGCCGGCTCACACACATGAAAGGACATGTGCTTAATTGCTTAGCTTCTCT AATCACTGCCATTAACTTCCTCCATTAATTGGGTTGTGTTTGAAGGTGATAGAAGCAATATTGACATGGTGGGAAAGTCT ATCAGTCATATCAGAAGCTGGGACAGTACTGGTGATGAATTTCATAATCATCATCACCATCAACAACATTATCAACATCA TCAACAACATCATCAAGTGTCTGGTTTCTACCCACATTATCCCCAACAATATCTGATGGGGACACAACAGCCAAACAATC ACAAATTTTACTGTCTGTCATCAAGTTCCTCATCAGCATCAACAACAACAAGAACAACATTACCCCATGTTTCCTTTGCA GAAAAAACAGGTAAAGTTCTGATGACTGACCCCTCAGATGCTGTTCCACCTCCTCCATTTTTCGACTTCCTTGGAGTAGG AGCCACATGACATGATGGTGATGATGATCCAAAAAGCTGCAGAGTTTCCCGGAAATTCCTCATGTAGGTGTGGTCCAACA TAACTCAGAAGCCATTCCAGGCAAATAGAAAGGATAGTATCAGTTTGGTCTCTGGCCGGCGTCATCACTTGTGTTGTTGA TTGTGATATTATCACGTTTCTGTTTCTCTACTGTGATTTTAATTTCCTTTCTTTAATTTCTTTCCACAGGGGGGCCTTTT CCATACTATTCACAAATAATGATAGTTCCA
CDS sequence (LotjaGi2g1v0302100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGCAAGTGCTATACAATCTCTTCACAAGAAAATCAAAATGGTTACCCTTTTTCCTCTTCCTGTTCTACTTCTTC CTTCCCATCCCCTTCAATGGGAATGGTGTATGCAGACATGGTATCACTCTCTCTTAACTCCAACTTTTCAAATGTTTCTT CATCTCAAGAGAGTAACCATGCCTGCAAGGGCTCTGGATTGGAAACTGGGAGTACAAACTGGACTTTTCCATTCATGAGA GAGTGCCTTCCCAGAAGCTTTGAAGAAGAAAACCCCAACATGGATGATGTGGAGGCAAAAAGTTCTGATTGCAGTGATGA GGCTGGGGAAACAAACCACAATGCTGACTTCAATGAAGAGAACCCTAATGAAAACCCTTCCATTTGCAAAGAAGGAGATA GTGGACAATCCAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTTGTTGCTCTTTAT GGTCCCCAAAATTGGAACTTGATAGCTGAAAAGTTGGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGATGGTTCAACCA GCTTGATCCAAGGATTAACAGGAGGGCTTTCAGTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATTTATGGCA ACAAATGGGCCATGATTGCTAGGCTTTTTCCTGGAAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATCATGGCT AGGAAATATAGGGAACAATCCAATGCTTACAGGAGGAGAAGGCTCAACAACCAATCGGTTCACAAAAGAACAACTGATCA TCAGCAAAATCAAACCCTTGCTTGCAGATCAGATTCCACAACAGAGTTAACAGAACATCATGCATCATCACACTACCTTC TCAATGGATCAGTCCTCAACAATAACAACATGGCTGTTGAATTAACAACCCACATGAGTGGTTCTGGAAGCAGAAACCAA GCCCCCCCACATGTTGGCTTCTATGCTCAACAGTCACCATTTGATTTCTTCTCTGGTGATAGAAGCAATATTGACATGGT GGGAAAGTCTATCAGTCATATCAGAAGCTGGGACAGTACTGGTGATGAATTTCATAATCATCATCACCATCAACAACATT ATCAACATCATCAACAACATCATCAAGTGTCTGGTTTCTACCCACATTATCCCCAACAATATCTGATGGGGACACAACAG CCAAACAATCACAAATTTTACTGTCTGTCATCAAGTTCCTCATCAGCATCAACAACAACAAGAACAACATTACCCCATGT TTCCTTTGCAGAAAAAACAGGTAAAGTTCTGATGACTGACCCCTCAGATGCTGTTCCACCTCCTCCATTTTTCGACTTCC TTGGAGTAGGAGCCACATGA
Protein sequence (LotjaGi2g1v0302100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKCYTISSQENQNGYPFSSSCSTSSFPSPSMGMVYADMVSLSLNSNFSNVSSSQESNHACKGSGLETGSTNWTFPFMR ECLPRSFEEENPNMDDVEAKSSDCSDEAGETNHNADFNEENPNENPSICKEGDSGQSKLCARGHWRPAEDSKLKELVALY GPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMA RKYREQSNAYRRRRLNNQSVHKRTTDHQQNQTLACRSDSTTELTEHHASSHYLLNGSVLNNNNMAVELTTHMSGSGSRNQ APPHVGFYAQQSPFDFFSGDRSNIDMVGKSISHIRSWDSTGDEFHNHHHHQQHYQHHQQHHQVSGFYPHYPQQYLMGTQQ PNNHKFYCLSSSSSSASTTTRTTLPHVSFAEKTGKVLMTDPSDAVPPPPFFDFLGVGAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 23 | 23 | 5.0 | – | |
| MobiDBLite | 89 | 114 | 26 | - | – | |
| MobiDBLite | 89 | 132 | 44 | - | – | |
| PANTHER | 103 | 444 | 342 | 4.4E-117 | – | |
| PANTHER | 103 | 444 | 342 | 4.4E-117 | ||
| MobiDBLite | 115 | 132 | 18 | - | – | |
| ProSiteProfiles | 137 | 188 | 52 | 17.17 | ||
| SMART | 141 | 190 | 50 | 2.9E-14 | ||
| Gene3D | 141 | 194 | 54 | 6.8E-21 | – | |
| Pfam | 142 | 187 | 46 | 1.5E-14 | ||
| SUPERFAMILY | 142 | 235 | 94 | 8.99E-28 | ||
| CDD | 145 | 186 | 42 | 1.85876E-13 | ||
| ProSiteProfiles | 189 | 243 | 55 | 26.929 | ||
| SMART | 193 | 241 | 49 | 1.8E-14 | ||
| Pfam | 194 | 237 | 44 | 1.2E-14 | ||
| Gene3D | 195 | 273 | 79 | 2.0E-17 | – | |
| CDD | 196 | 236 | 41 | 5.41659E-12 | ||
| MobiDBLite | 258 | 281 | 24 | - | – | |
| MobiDBLite | 262 | 279 | 18 | - | – | |
| Coils | 456 | 459 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0302100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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