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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0302500 |
| Transcript ID | LotjaGi2g1v0302500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor APL; TAIR: AT1G69580.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4I274|PHL8_ARATH Myb family transcription factor PHL8; TrEMBL-Plants: tr|I3T9R2|I3T9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0302500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77665336..77667830) extracted from Lotus japonicus Gifu genome v1.2.
ACAGCATCAAGAAAGTGGCACCCTATTATTCCTCATGGGGGCCTACCTAATTCATCAGGGAATCAATCAAAGAGAGAGGG AATGAAGTGGGAAAACAGCAAGATAAAAACAAACCACACACTTTCCATCTTTTCTCTCCTTTTAAGACCCAAAATTGAGC TGTTATGCTTTCTCTATTTTTGCTGCATCATCAGAGATTCTCTCCACCCCATTCAAGTCAAAGAAGAAAGAGCAAGGGAA TTTTAATTGTTTTGAAAAAAAGGAAAAGTGAGTATGAAATGGGATGGCATATATTCCCCCAACATAACCCCACTCATGTT TCCTGATATGGAGTGAGATCATAAAGAGAAGTATAGCTTCTATATATTGGTGCACGGATAATAGGATCAACATAACATAT TCATGTTCCAATCCTTTACCAGTAACTCATCCAAATAAAGCAAGCAAATGGGTCTGCAAAATCAAAGTGTGCATTTTGTT CTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGATTCATCGAGGCGACTAATCAGCTCGG AGGTGCAGAAAGTGAGTACGAGCCTGTTTGAATACGGACTCATTGGAACTTATTGGAGCTTATCTACCAGAAAAAACATT AGATAAGCTCCAATAAGTGATATTTGGTTTGTATCCCAACAGGCTCTACAATACAAACTCAATGACCATCCTATTTTGAT TTTACACTTTAGAGCATATCTTAGCCTAATACACTGCATTTTTTGTGGCAGAGGCAACTCCAAAGAATCTTATGAGGGTG ATGGGGATTCCAGGACTTACTTTGTACCACCTCAAGAGCCATTTACAGGCATTCCCCTTTTGTAATGATAGTATAGTTTG CAGTTTTTCTATTCACTGATTGTGGAGATCAGAAGTTGTAACTTTTTCATTTTTCTTGTTACAGAAGTATAGGCTAGGGA AAAGCCAAGTACTAGAAACCTGCTCTGACAGCAAACAAGAAGGTAAATTTTAGCATTTTCAGTTAAACAACATATAATGG TTGATAATTTTCTCATTTGACATAATATTGATTCTCTTTCTGGTGTAGATGATTATGACACAGAAACCAAGAGCAGTGAT GATCATTGCAGCAGGGAAATCAGTTTTGGGGCCCAGAATCAAAATACTGAGTAATAATTGAAATTTTATCAATTTTTTAA AGAAATGAATCTTTGATGGAAATGTTATTGCCTAGAGGTTTTATTGATCAAATTCTGTGTTTACCAGGAACTTGCAGATA GCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGAAAGCTTTATGAACAAATTGAGGTAGCTCATATGATTTGATTCAA GCTTAATCTTATAATTTGGAACTACGTGTTTGGAAATACTTCAATAATCGATTATAAAGTCAAAATCATTTCTGAGGAGA AATCGCCTTTGAGTTGCTTCTGAGTGCAAGAACTGATTCTGATCAAAGAGAAATTGATCCATAACTGTTGATGCATACAT GATAATCAATTTGGATTATGATTTCAGGTACAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGGAAATATTTACAATC AGTGCTAAAGAAGGCACAGGAAGCACTTTCAGGCTACAACAATACTTCCCCAGTTGGTATAGAACTCACAAAATCTGAAC TTTCTCAACTAGTTACCATGATCAACCATGCTTGCCCAAATTCTCCCACCTCAGAACTCACAGAAACAAGAGGGTTGAGC TTAAACTGTGGGCAGAGGAAAAGAGACAGAGGAACCATGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAAGCTCTGG AAGGAGAGAAGAGAAACAACCAATGGAAGAAGAAATAGGGGACTTCAAAAATTCCAATACTATTCCACTTGAATTGACAC TATTAACCGTTCACCATGAAGATAAAGCATCCAATGGAGATTCAAGTAGTGAAGCTAATGGGAGAAAAAGAAGTGCAGCT ACTAAATTTGATGGTAGCAGTGCTGAGCAACCACCTGGGAAAAGATGTAGCAGGAAACCCAAGTTGTCAGAAATGCTTGA CTTGAACAGCCAATGTGAGAGTGACATGGACTCAACAAGTTCAAAAACAGCATTAGACTTAAATTGCAGCCCAAACTTTT CGGAACCATGAAGATAGTTTATACTTTTCTATGGTTATGTGAAACGTATGCAGCAAAATCATTATCATAAAGGAAATATG TTTATATAGTATGTATATATTATCATAATGAAAAGGAACAACAATTGACTGTATAATATAATGCAACCTTGTCAAGAAAA AGTTCTAATACACATGATCATATGGTTGGTCATTGGTGTGCACAAATCTCCCACCCTTTCTTTGTTTTCACATGATATTG GGCCTTTCTGCTGTAACAATTTGGTAATGGGCACCCTGTGGTTTAATTATTATCATTCTGAAGGTCCTACTGAAATATGA GTTGGTAACATCTAA
CDS sequence (LotjaGi2g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTGCAAAATCAAAGTGTGCATTTTGTTCTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCA CCAACGATTCATCGAGGCGACTAATCAGCTCGGAGGTGCAGAAAAGGCAACTCCAAAGAATCTTATGAGGGTGATGGGGA TTCCAGGACTTACTTTGTACCACCTCAAGAGCCATTTACAGAAGTATAGGCTAGGGAAAAGCCAAGTACTAGAAACCTGC TCTGACAGCAAACAAGAAGATGATTATGACACAGAAACCAAGAGCAGTGATGATCATTGCAGCAGGGAAATCAGTTTTGG GGCCCAGAATCAAAATACTGAGAACTTGCAGATAGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGAAAGCTTTATG AACAAATTGAGGTACAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGGAAATATTTACAATCAGTGCTAAAGAAGGCA CAGGAAGCACTTTCAGGCTACAACAATACTTCCCCAGTTGGTATAGAACTCACAAAATCTGAACTTTCTCAACTAGTTAC CATGATCAACCATGCTTGCCCAAATTCTCCCACCTCAGAACTCACAGAAACAAGAGGGTTGAGCTTAAACTGTGGGCAGA GGAAAAGAGACAGAGGAACCATGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAAGCTCTGGAAGGAGAGAAGAGAAA CAACCAATGGAAGAAGAAATAGGGGACTTCAAAAATTCCAATACTATTCCACTTGAATTGACACTATTAACCGTTCACCA TGAAGATAAAGCATCCAATGGAGATTCAAGTAGTGAAGCTAATGGGAGAAAAAGAAGTGCAGCTACTAAATTTGATGGTA GCAGTGCTGAGCAACCACCTGGGAAAAGATGTAGCAGGAAACCCAAGTTGTCAGAAATGCTTGACTTGAACAGCCAATGT GAGAGTGACATGGACTCAACAAGTTCAAAAACAGCATTAGACTTAAATTGCAGCCCAAACTTTTCGGAACCATGA
Protein sequence (LotjaGi2g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLQNQSVHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAEKATPKNLMRVMGIPGLTLYHLKSHLQKYRLGKSQVLETC SDSKQEDDYDTETKSSDDHCSREISFGAQNQNTENLQIAEALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKA QEALSGYNNTSPVGIELTKSELSQLVTMINHACPNSPTSELTETRGLSLNCGQRKRDRGTMCSLESSLTSSESSGRREEK QPMEEEIGDFKNSNTIPLELTLLTVHHEDKASNGDSSSEANGRKRSAATKFDGSSAEQPPGKRCSRKPKLSEMLDLNSQC ESDMDSTSSKTALDLNCSPNFSEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 341 | 338 | 4.6E-146 | – | |
| PANTHER | 4 | 341 | 338 | 4.6E-146 | – | |
| Gene3D | 13 | 76 | 64 | 8.8E-27 | – | |
| SUPERFAMILY | 16 | 72 | 57 | 6.45E-16 | ||
| TIGRFAM | 17 | 72 | 56 | 1.4E-21 | ||
| Pfam | 19 | 70 | 52 | 2.9E-6 | ||
| Pfam | 116 | 162 | 47 | 2.5E-22 | ||
| Coils | 119 | 139 | 21 | - | – | |
| MobiDBLite | 212 | 253 | 42 | - | – | |
| MobiDBLite | 232 | 247 | 16 | - | – | |
| MobiDBLite | 269 | 344 | 76 | - | – | |
| MobiDBLite | 315 | 344 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0302500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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