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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0306600 |
| Transcript ID | LotjaGi2g1v0306600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT1G69780.1 Homeobox-leucine zipper protein family; Swiss-Prot: sp|Q8LC03|ATB13_ARATH Homeobox-leucine zipper protein ATHB-13; TrEMBL-Plants: tr|I3SIZ2|I3SIZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0306600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78015932..78019351) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATTAGTAAAGCATCATGAGCATTTCCTCTTAAGTCACCCAATTCACATTGAAGAGTGATATTATATGAATCTCCAT TTCCTTTCTAATTGCCAATTCTATCATCACAATTAAAGACAACTGTCTTTGCAAAGAAGAACCCCTATGCTTGTCTCCTA ACTGAGAAACTAGTCTATCATAATAATAAGCAAAATAATTACAGAAGGGTTTGCACATGCAAACACTCCATTGGAATATT AGACAAGTTGAGCCACAGAAGCAACCTCCCTCTTTTATTCCTTTCTAAACACAATTCTTTTTTCTTTATTCTTATCCCAT ACACTAAACGTCATTTTAACATCTAATTACCAGCATTTTTTTTTTCTCTGCAAATGCTTAGCAAGTTGTTTTTTCTTTTT ATGTGTATAAAGTAATTCAGAGCACTTTTTTTATTTGACACTAGTAGCTTATTAAATAGAATAAAAAAACAAAACAAAAC AGTAATATATATTGAAGTTGATGTGTAGGACTATAGGTTCAAACATCTCTCACCATCCCTCTCTCTCTCTCTTCCCCCTC CACCATTTCCAACTTTCTTTTCCTTTCCAACTTTTCACTGAAAAACTCTCCCTGAAACTGATATTGTGTATATAAGCCAT CACTCAGAACAATTTGTCCATCCTCTTCAATTGAAGAACTAAATTAAATGGCTCCTGAATATTTATCAGAAGATGATATT ATGCATTAAACTTTGAGCATCTGATATCTTCTGTTCTTCATTCAACATGGAGATCACAAATTCACAACACCATTAAGCTG ATCTTGAAGATTTTGTGGCAGGCCTAAACCACTAATGAGATGGATTTCTTCCCAACAAATTTCATGCTACAAACCCCTCA CCATGATGATCATCATCAACCTCCACCTTCTCTCAACTCAATTCTACCTCATGATTATCATGGTAAGCACTCACTCTAAT AGCATGTTTGGATCAGATTTTCTTTCATCAGAAACAATTCTGAAACACACAAACTACTTAGAAAGCTTCAGAATCAGTTG GAGAAGGATTTTAAAACATACACTGGGCCTCAGAAAGAAACACAGTCCCCCACATACACACACACACGAACACACACACA CAAATATTCTGTGCCTGAGACCTGGCTTTAAATGTTAATGATGCAGGGGGACCAGCCTTTCTAGGGAAGAGATCTATGTC ATTTTCATCAGGAATCGAACATGGAGAAGAAGCCAATAATGCTGAGGAAGATTTATCTGATGATGGATCTCAAGCAGGTG AGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACTCTTGAGAAGAGCTTTGAGCTGGGAAACAAGCTTGAGCCAGAA AGAAAAATGCAGCTTGCAAGAGCTCTTGGGTTGCAGCCTAGGCAGATTGCCATATGGTTTCAGAACAGGAGGGCTAGGTG GAAGACCAAGCAGTTGGAGAAAGACTATGATCTCCTTAAAAGACAGTATGATGCTATCAAGTCAGATAATGATGCACTTC AAGCTCACAACCAAAAACTTCAAGCAGAGGTTTGTAGTAGTTCTCTTCTAACTCATAATCCAGTTCTAATCATATGGATA TGATGCTTCAGTTACCTGTTTACTTTCACATCATATTTGTTACTTTTCTTAAATATAAGGGTAACAAAAAATGAAGAACT AGAGACATGTTCAATTTTGTATATGATTGTCTCGATTCTGCAGAATAAAGCTTGGCAATGATGATCCTCTTTTTTCAACA GTATACATGCCTTTTTTGACCTCTGTGTAGTTTTCAGAACCGTTCCTTTCACCCATTCTCCAACATTATAACTTTCTGTA AAGCTACTTTTTCCAATCATCTTCAGCCACTTCATCAAGATCCAATCATCGATTTTCACTCCAAGCTTAGCATGTTTGGA TCAAATTTAAAATCCAGAAGCTAGTCATAAAAGTTTCTCCTCAAAATTAAATTTGACTTTAAAATCCATTGTACTTGTGT TTTCCAAACATGCATATACTGGTTTTGTACTTAAGTGTTTCATCTTAGTAAGTGTGTGTTTTGAAAATTCTTATACAATT GATTAGAAGCCAGAACCAATTAGCTTTTGTGGATAGCTTCTTTGTTTCAGAGTTGGATTTGATGAAAGTGAAGTTGATAC AAACATGCTATTATTACTATATTTCAGTTTATGGAGATTTTATAAAATTTTCATGTTAAAAACTTTTGTTTTGTGGCCTA GGACTGGTGTTTTAGGTCCTGTTCTTCTGCATATTGTTTGTTTTACTGTACCCTTATTGAATCAGATAATTTTACTGGTG CAGATATTGGCACTGAAAAATAGGGAGCCTACTGAATCTATCAACCTTAATAAAGAAACTGAAGGATCCTCCAGCAACAG AAGTGAGAACAGCTCAGACATCAAGTTAGATATCTCAAGAACACCAGCAATTGATAGTCCACTATCCACACATCATCACA ACAGCAGAACACTCTTTCCACCCTCTGCTAGGCCCGCAGGATCAGTTGCTCATCAACTCTTCCAATCTTCTTCAAGGCCT GATCTTCAATGCCAGAAGATGGACCACATGGTCAAGGAAGAAAGCTTAAGCAACATGTTTTGTGGCATGGATGATCAATC TGGGTTTTGGCCATGGTTGGAGCAGCAACATTTTAATTGAATAAAAAAGGAAGAGTTAATTATTTAAAATTTGAATGTAG TAGTTTTCTTTCCCTATGAAACAAGAGGGTATATCCATTAATTAATTACCATATTTTATGAGTATGTTTTGCAAACTTGA TGTATAAAATAGGATATGTCAAGTAGATATTTATTTTCTGGTGGGGCTTGAAAATTTTTATATGGATGAATAAAGGGCTA GTCACTTTTTTTTCTACTTTCCCCAAGTTATCTTGAAAGTTGGTGTGAAATTACATTATCTTGTTGAATTATTGGGGATT GAGGAAAACATGTTTGCTAGTGTCTCTGATTGCAGGCAGTTTTGCATGGAACATTAAAATAATGGGAGATTCTGACCTGA CATTTTTTAAAACCAATTACTTAACTTGCTTTGGAATCATAGTGGAGCAAAAATGTTTGCCATTGCTTTGAAGAAATGAT TTATGCTGATTTCATCTTTCTGTACCAACAATGAACAAAATCCACCCGAACGTAACAAAGTATACATAAAAAAAGAAAGA GAATCAAACACACATTCCAAGGGAGAAAGAAGACAAGGAGATGAAAGAGTGGAAGAAAACAAACAGAGTTGGAAATGGTC ATTCTCGTGAATGATACGTTGTCGATTTTGTTGTTCATGACAAAATAGAAAAAAATGGGTATCTTTAGAATTTCCTTTAG CTGATAAAGTTTTTGAGATTTCAAATTTTTAAATTTCAATCAATATTATGTTATTTAAAC
CDS sequence (LotjaGi2g1v0306600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCTTCCCAACAAATTTCATGCTACAAACCCCTCACCATGATGATCATCATCAACCTCCACCTTCTCTCAACTC AATTCTACCTCATGATTATCATGGGGGACCAGCCTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATCGAACATG GAGAAGAAGCCAATAATGCTGAGGAAGATTTATCTGATGATGGATCTCAAGCAGGTGAGAAGAAGAGGAGGCTTAACATG GAACAGGTGAAGACTCTTGAGAAGAGCTTTGAGCTGGGAAACAAGCTTGAGCCAGAAAGAAAAATGCAGCTTGCAAGAGC TCTTGGGTTGCAGCCTAGGCAGATTGCCATATGGTTTCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAG ACTATGATCTCCTTAAAAGACAGTATGATGCTATCAAGTCAGATAATGATGCACTTCAAGCTCACAACCAAAAACTTCAA GCAGAGATATTGGCACTGAAAAATAGGGAGCCTACTGAATCTATCAACCTTAATAAAGAAACTGAAGGATCCTCCAGCAA CAGAAGTGAGAACAGCTCAGACATCAAGTTAGATATCTCAAGAACACCAGCAATTGATAGTCCACTATCCACACATCATC ACAACAGCAGAACACTCTTTCCACCCTCTGCTAGGCCCGCAGGATCAGTTGCTCATCAACTCTTCCAATCTTCTTCAAGG CCTGATCTTCAATGCCAGAAGATGGACCACATGGTCAAGGAAGAAAGCTTAAGCAACATGTTTTGTGGCATGGATGATCA ATCTGGGTTTTGGCCATGGTTGGAGCAGCAACATTTTAATTGA
Protein sequence (LotjaGi2g1v0306600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFFPTNFMLQTPHHDDHHQPPPSLNSILPHDYHGGPAFLGKRSMSFSSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNM EQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKSDNDALQAHNQKLQ AEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSTHHHNSRTLFPPSARPAGSVAHQLFQSSSR PDLQCQKMDHMVKEESLSNMFCGMDDQSGFWPWLEQQHFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 280 | 280 | 2.0E-156 | – | |
| PANTHER | 1 | 280 | 280 | 2.0E-156 | – | |
| MobiDBLite | 50 | 79 | 30 | - | – | |
| SUPERFAMILY | 65 | 131 | 67 | 1.33E-19 | ||
| ProSiteProfiles | 69 | 129 | 61 | 17.394 | ||
| SMART | 72 | 133 | 62 | 1.8E-18 | ||
| Pfam | 74 | 127 | 54 | 1.4E-15 | ||
| CDD | 74 | 130 | 57 | 1.34715E-16 | ||
| Gene3D | 78 | 127 | 50 | 5.4E-18 | – | |
| PRINTS | 100 | 109 | 10 | 1.1E-5 | ||
| ProSitePatterns | 104 | 127 | 24 | - | ||
| PRINTS | 109 | 125 | 17 | 1.1E-5 | ||
| Coils | 121 | 169 | 49 | - | – | |
| Pfam | 129 | 169 | 41 | 3.4E-17 | ||
| MobiDBLite | 174 | 197 | 24 | - | – | |
| MobiDBLite | 177 | 197 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0306600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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