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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0306800 |
| Transcript ID | LotjaGi2g1v0306800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT2G02820.2 myb domain protein 88; Swiss-Prot: sp|F4IRB4|MYB88_ARATH Transcription factor MYB124; TrEMBL-Plants: tr|A0A151TFM9|A0A151TFM9_CAJCA Myb-related protein B; Found in the gene: LotjaGi2g1v0306800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78054327..78061736) extracted from Lotus japonicus Gifu genome v1.2.
CACCCTTTATCTCTCTACAGTGTATACAATATTTTTTCCTATGTGACCGTTTTGAAAAAAGTTAGAGAGAGAAACAGAGA ACAACTGAAGAAAAAAAACAACCAAACAACAACAACAACAACAGTCTTATTCTTATCCCATGATGCCATTGTTTGCAGAA TCTCAATCAAGGAAATTTGTCTACTTGAGAGAACTTTGAAACTTTTCCCCCATTTGGGTACCCCCAAAGTTGCTTAGTTT TTCTAGATCCATCACCTTTTCTGGGCTATCAATTGCATACAAGGAAGAATAGTAGAATACAGTACATCATCATCATCAAA TACAGGTTGTCTCGATTTTCGGAAAAATACGATTTTGATCCAAACCCATTTTCCCTTTACTCACCTTTACATGTATTCTC CATTGCCCATCTTCAATCACGTGGTTTTGGTCCCTTAATTTGAGAATTAGGGTTTTGTTCTGTTCTGTTGCTCTGTCTTG GTTACAGGGGATTGAGATTGAAAAGTTAGGATCCGAGGGGGTTTTGGCATTCTTTTTCTCCTTGAATTGCTTTTGATAAG GTAGCTTTTGAGAATGGAATTTATGCTTGTTACGGTTCCCGTTTTGAAACTCAACTCAACACAGTGAGGTTGTAATTGTA AAGGTGAATGAAAGAGAAGGGTGAAGGGTGTTTTCCCCTTTTTGTTTAGTTTTTATTTTACTTTTGATAAAAACTCACAA AAGGGGTGTGTTCTCATATTATAAAGGTAGAGCGTTGGCTTTAGCATGCAACTTGGCTCTGGTAAAAAGAGGGAGCGTTT AAGAAAGAGAAGAGAAGTAGCACACCAATAGAATAAACAAACAATCAATCACAAGGACAACAAGATCATGCAAGATATGA AGCAGCAGCAGAAGCAGAAGCAGTTGGCCAGTGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAG GTCCTTCTTTTCTTACTATAAAAATCATTTCATTTTTTCTTTGTTCTAAGTCTATTTATTCTTCCACTTATTATTATTAA TATTCTGTTGAATCTCTTCTTCTCCTTTGGAGTAGTGTCTCATCAATCATGTGTGTTTTGTGAGTTGCAGGAGGATGATA TACTCAGAGAGCAGATTGGTCTCCATGGGACTGACAAGTACTAATACCAATACCCCTTTTGCTTATTCTTCTTCTATTGA GACATTAGTCACCAGTGCTTTTCCATTTTTCATTGATAAGTGAGACTAAGTGATTTCAATTGGAATAACCACATGCAGTT GGGCAATAATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGGTGAGGTTTTTTTGAATTTAGAAGT GTTCTTTTAGAATCTTGATGATGATGATTCATTCAAGATAGTCTATGTGGTTCTCTGTTTTATCCTTTGACTTTCATGGC TCCTGCTTTATTGCTATTCTCTCTCTGATGGTTATGTAACTGATAAATTACCAGATGGTACACTTACTTGAATTCTGACT TCAAGAAAGGAGGATGGTCTCCAGAGGAAGATATGCTCTTATGTGAGGTAGATTGCTGCTCCATGTGTTCCATTATGGAT ACTTTTGTACCACACAGTTGGCATAGGAATTTAACAAGCTTACTTTATAGTTAGCTTGTAAAATATGGACTTCATTTATC ATATTGATCCTTAGAGCTTGTAAAATATGGACTTCATCTTTTTTTTTTCTTTCTCTATTTTCCCTCTTTGTGGGTAGGTT TCAATCCATTCTTGTCCTTACGGATATTTAGTGCTAGTATCACTGAAAAGCCATTTGTTTGACATCAAAATCTACTTCAG CCAGAGTAGGTTATAACCGAAACTAACCAATACAGATGACACCAATTAGTGTTTAACTTAACATTGCATCTTTTCTGATT AAATGTGATTTTGACCTAATTTCTTGCTATTACCTCTGTAGGCTCAAAAAATATTTGGTAATAGGTGGACAGAAATAGCT AAGGTGGTTTCAGGCAGGTAAAGGAAAATTCTTTCTTTTCTTAATGAAATACCAAATAGTCATTTTTTTCAACAGTTTTT CTTATTGTAATGCTTCGTACATTGCTTTATATACAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAA AGAGAGCAAAGTATGAAGCCTTAGCAAAAGAAAACAGCACATCATACATCAATTCAAATAACAAGAGGGTTATTTTCCAA CAAGAGCATAAGACAGACACAGCATCAGAATCTGCAGTACTTAAGAAGATGAGGTATGGTAATCTAGATATCAAAATACA CAACTTCTATGAAAAAGAGTGTTAACACGTCTTCCTATTGCAATATAGGAGGTCCCATATCCCTGATGGCGCAGAAAAGA TCAACTTTGCAGACAGATCACATAAACAAAATGGAACTCCTATGAATCAGCAGTCAAGAGCACCATTTGCTGTTTTACCT CAAAACTCTCATAATGTCAACAAGTTGCAAGACCAGGATCACGTCTGCAATGTGAAGTTTGGTGGTGATGGTAATGCCTT TTATTGAAATTTCTTTACTTATAGAACTCTATTATTCTAGGCTTGAAGGCTGAAATAGGAAAACAGGATAACATTAAGAG AGTGTCCCGTTTGCTTTCTGTTTTAATTTTCAGTTACTATGTTTTCTCTAATGATTACAAAGAGGCCATGTTATCTCATT ATCTTCCTACTTTCAGGATTTTGAAGTAAATAGAGCAAATAAAATCAGCATAATGAAAACAGGAATGAAAAGATGTCTCA TTTTTTATAATTAGTGTAAACATGTCAATTGAAAATGAAAGCGGTAAAACAACTACACTCTAATATATTAAGCCAGAAAT AACCTTTGCCGTTCTATCACTATAATGTGACTCTTGGTTTGTCATGCTTTTGCAGCCCAAAACAACAAGATCGAAGGAAC ATATCTTAAAAAGGATGATCCAAAGATAAGTGCATTGATGCAGCAAGCAGAGCTACTAAGTTCACTGGCTCTAAAAGTTG ATGTAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTGTGGCTTGATAGTTTCTTAACTTGCTCTTGTTTTGAT TTTTGGACATCATATAGGCTTCTTTCAATATGTAGTTCTATGTCTTCAAATGCAAAATCCAAAGCGTAGATTATTTGTCA AGAATTTCAATATCAGAAGAATTAAATTACTTTTCCTATGTCAACCCTATCTATGGGAAAATCATGAAAGTCATTTAATA TATTTGATACTGGCTTTGAAAAATCTAAGCTTTGTTTTTCAGCTAGATAGTTTATCTTTATTATTGAAAATGTTAAGTTC ATTCTGCTAATGCTTGTATGTATTTCTGTACTAGCCGATTTTATGGTGCTTAATTTTTCAGCACCCTGGTAGCATTGTAA GCTAATCACAAAGCATTAGACATTATATGATTGTATAATTGCTAGACTAATTCAAAATTTCTACATATGACTAAAGTTTG AAGCATTTATTGTATCAAAGACAAACTCCCCAAAAAAGCTTCAGCTTTTAAGTAAAGGCCTAGAAGAGACTATTTGTGTA TCTCTAACTTGCCTCTTTGTATAAGTCATAGGAGTCACTGGAGGTGTGGATAATTCAGAAGCCCACTTCACCATATGCTA AATTTAATTTTATGGATAATGGGGCGGCAAGACTTGAACTCCTGACCACTTAGCACGGAAGCTCTAAATAGTTATGAATG ATAAATTTTAGTGATATTGGCTTTGAAAAATCTATGAAATAAGTTTATAGGTCAGCATGCTAGTATATAATCAATAATAA AAAGACTTGGTTCTGATTAGCCCATGACTAGCTGATATCTGCAGGACTTGTTCTTGAGCATATTAATAATGAAGGCCATT GTTCATGTTTAGATAAGTTTTATAACACTTATGTGTATTGATGCCAGGTCCTTCAAGAGTTTCTGAACCGAACTAAAGAA TCAGATATTCCCGGATATAAGCTTCCAGATTTACAGCTTGCAGATCTGAAAGATTTATTGGATGACTTAAAGAGTTGTAG TGATGAAATCCAGACAAGTTGGAGGTACTTTAAGTTTGTTGAGAATTTGACCTCATGAGGGCTATGGAATTTCTAATAGT TTCTGAACTTATTATAGGCATATGGAGCTATATGAAGACTCTCCAAGCAGTTCTGAACACAGTACAGGATCAACTCTCGT GCCCCATTCTGCTGGTGAGAATTTGGAACACTCACTGCATCAAAGTATTGGAACTGAACTGACGGCTATACAAATTGGAG ATCAAAAAGGAGGAGGATGTGATCAAGTGGTTCTTTCTGGTGCAACTTTGGATCAAGGTAAGATAATCAAATTTCATTAT AACAGAAAATTAGAAGGGAAGATAAGATGTGTAGCCATGTATCAACCTAATTTAAATGGTTATTATTTAAAACTGGAAAT TTTTATATAGGAATTTTTTTATTATATTTCCCTCAAAATAAAATACGTTTTATATGCTATGCTAACATTTTAATGAATAG AATTGCTAATTAGAAATTCATCTTTCTTTTGCAGACATGCTCCCATCTTGTGAGGAACAAATAAACAATAATGGTGTTGT TTCCGCCTTATCAAGTACAGACTTCAGTTCTCCTCTTCAAGTTACCCCTCTGTTCAGATCCTTAGCTGCAGGAGTTCCTA GCCCACAATTTTCAGAAAGTGTAAGTTACCCTAGCACTTTGGAGATCAAATAACTGATGCCAATTGCAAGATTATAACAG TAACAGTGACAAGGTTTCTGATTATATCAGTAATAATATGACAAAATTTGGGATATCACTGAACCCATGTATCATAAAAG TTGAACCAACAGTAGTACTTTCCGTAGTTCTGAACTTATAAGATCGACCCTAATCAGCAGCAGGAATTCTGAAATGTTGT TTATTTTAATCAACTTCATTAGTAGTGGTACAGATAGTAGGATAATCATTAATGCTTATGTTGTATACTGAGTTTAAATT TTTTTCTTAAAAATTGTTGTAACTAACATCATTAGGATGTAGATTAGTGGAATCATTGTTAGAGATAAATTGAGTAAAAT TTTATTCAAAATTCATCATAAAATTCAGCTGAGCCATGCAACACAAGAAGTGGGGTAAAGTTGAAAGGTAGACATGTAAC TGGACATAGGTAGTAAGATAGGAAATAACTTGCTCAGCAGTAATACCTATATATACAATATAGCATGTAATTGAAACTGA TGGGTAAAACTTGTGTTACCAAGGATAAATTAGGCTTCTTTTTTGGTTATGATTAGTAGTACTCTGAGCATTTTCCTAAT TCCTAACTAGCAACAATAACTTAAAATATCCAAGTTTTAGAACAGTTCATATTCTGGTTTTTGCGACTCTTATGCACAGT ACACATTTGATTTTCCTAAAGTTTCTCTTATAGACTTTGTAGCTTGCAAATCTTATTTCAGGAAGACAATCTGTGACACA CATGTCTTGAGAGCAATAGCTTTTACTTTGAAATGGCAGTGTGAATTTCTCTTTTTAGTAAGCACATTCGTTGACATAAA AAATTATGCAGTATGCATATTTAAAATAAAAATGAAGATAGGCCTCTAGTCTTGCTACTAGTCCCAGCTCAACAACTACA GAAGGTGGAAGTTGTATTTGTTTCCTCAGTCTTAATATGTTCTTCGCATTTACTCCAAAAAAAGTGCTTCACTTCATCAT CTAAATATTCTATGTATGTTTATTTGTTTCTTTCTAAGAAAATATACTGATATGTTATTGATGAACAGACATTTACGGTA CCACATAATTATAGTATCTTCATCTTCACACCCAGGCAAAAAAACTTTTAACAAACAAGAAATCATTTTGCGACAGGGTT TTAAAGTGTATGCTGTTAGTTATCACCATCTCCATTTATCATCTGTGATATCTGTTAAACACAAAACAGACATCTATCAT GCATGCTGTATTACCTTTTTCAGCTAGTTTGCTGCTTTGTCTTTTCTTGCTTGACTACGTGAAGTTATGAACTGCATGGT AGTTGGATTTTTTCCGGCAAAACCTTTATTTTCTCTATAAAAACAAAATGTTTGCACTGCATCAAAGTTTGAGACATAGA TAGCCGTGTTTTCTTTGACACAAACAATTTTGTTTTTTTCTTTCAGGAAAGGAACTTCCTTATGAAAACACTCGGAATGG AGTCTTCATCTCTCAATCCAAGTGCCAAGCCTTCACAACCGCCGCCCTGCAAAAGAGCCCTCCTACAGAGCTTATAATCT GAGTATCTAATTCATCTGATATATTTTTTAGTCCTTTTCCCCCTACCTTGGAAATCTGGCCTGTTAGTTCTTCTCTTCCT GGTTTGAGAAAGATTGCAATTTTGTTCGGCCTAAAATTTTGATGGCCACCCCTCCCCTAGAATGTTATGGCACATTCTAA GGACCTTCTGCATATCTAACTGTCCTTTTCCTCCCCTGTCGTTTCCTTTCCTAATACTTGCACCAAAAATTAGCGTGCTT AGTGTGTCATTCTTTGGTTTGCTTCTTTGATATCGTTCTGGGTTTGTTTTTCTCCGATCCAGCTTGGTTTGCTTTTTGTA CAGAGCATGCTGTGTGATGCTAGTCATCCTAGTCATCCTGATTCCTGAGTGTATGTAATACATCGGCAATTCGCCTATCC TACTACATATAATGAACAGAGACATAGATAGAAGAAAAAAAGGAGAAAAAAGAGAGGTTAAACATATTAACCAGTGGCAA ATTGGATTTTTATTTGTTGTTGTTTTGGGTGTGCATAGGTTATAGAATAAATATTATTTTTCCTTTGTTTGGTACTGGTG TACTGAAACATATCTATAATTGGAGTGGAAATGCATTTTGGCTTTGGTGTGCAGATGTTGTTTGTGTTCTGTATAACCTG GGTTTTAATACAACCATATGTTGACAGTTCTTCTAAGCGGGAAAATGCAAAGCAAGGAATTTGTAGGAAAGGAAACAGGC ATGAACATGAAAGTAAAGTTTCATGTTGATTTCCCCCACCTCGGTTTCAAGAAGAGAACTGAAAAAGAAAAAAAGAACAA TGCCATATACATCACTCAGAACTATAGGTAGCAAATGTCATCAGATTTATTGCTAGTTTAGTACTCATTCACTATTGCAA AAGACAGCTTTCTGAAGAATGAGTTCCAGAAAGAAGAAAAACATAACAAGAAAAAATAGAGAATGATAAATTTCTGTACT TACAGACTGTACAGCAACCTCGTACTGTGTTCTGACAGAAGCCTGCAAACATTTCTCTCACTCTTACACTCAGCCTCATG GTTATTCTGCCATGGATAGTGCATTGCTTTGCAGAAGAACAGTTCTGGGG
CDS sequence (LotjaGi2g1v0306800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGATATGAAGCAGCAGCAGAAGCAGAAGCAGTTGGCCAGTGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGAC GTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAGATTGGTCTCCATGGGACTGACAATTGGGCAATAATTGCTTCTA AATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGACTTCAAGAAAGGAGGATGG TCTCCAGAGGAAGATATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAATAGGTGGACAGAAATAGCTAAGGTGGTTTC AGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAGTATGAAGCCTTAGCAAAAG AAAACAGCACATCATACATCAATTCAAATAACAAGAGGGTTATTTTCCAACAAGAGCATAAGACAGACACAGCATCAGAA TCTGCAGTACTTAAGAAGATGAGGAGGTCCCATATCCCTGATGGCGCAGAAAAGATCAACTTTGCAGACAGATCACATAA ACAAAATGGAACTCCTATGAATCAGCAGTCAAGAGCACCATTTGCTGTTTTACCTCAAAACTCTCATAATGTCAACAAGT TGCAAGACCAGGATCACGTCTGCAATGTGAAGTTTGGTGGTGATGCCCAAAACAACAAGATCGAAGGAACATATCTTAAA AAGGATGATCCAAAGATAAGTGCATTGATGCAGCAAGCAGAGCTACTAAGTTCACTGGCTCTAAAAGTTGATGTAGAGAA CATGGACCAAAGTCTTGAAAATGCATGGAAGGTCCTTCAAGAGTTTCTGAACCGAACTAAAGAATCAGATATTCCCGGAT ATAAGCTTCCAGATTTACAGCTTGCAGATCTGAAAGATTTATTGGATGACTTAAAGAGTTGTAGTGATGAAATCCAGACA AGTTGGAGGCATATGGAGCTATATGAAGACTCTCCAAGCAGTTCTGAACACAGTACAGGATCAACTCTCGTGCCCCATTC TGCTGGTGAGAATTTGGAACACTCACTGCATCAAAGTATTGGAACTGAACTGACGGCTATACAAATTGGAGATCAAAAAG GAGGAGGATGTGATCAAGTGGTTCTTTCTGGTGCAACTTTGGATCAAGACATGCTCCCATCTTGTGAGGAACAAATAAAC AATAATGGTGTTGTTTCCGCCTTATCAAGTACAGACTTCAGTTCTCCTCTTCAAGTTACCCCTCTGTTCAGATCCTTAGC TGCAGGAGTTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTCGGAATGGAGTCTTCATCTC TCAATCCAAGTGCCAAGCCTTCACAACCGCCGCCCTGCAAAAGAGCCCTCCTACAGAGCTTATAA
Protein sequence (LotjaGi2g1v0306800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQDMKQQQKQKQLASEESKKKERHIVTWTQEEDDILREQIGLHGTDNWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGW SPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENSTSYINSNNKRVIFQQEHKTDTASE SAVLKKMRRSHIPDGAEKINFADRSHKQNGTPMNQQSRAPFAVLPQNSHNVNKLQDQDHVCNVKFGGDAQNNKIEGTYLK KDDPKISALMQQAELLSSLALKVDVENMDQSLENAWKVLQEFLNRTKESDIPGYKLPDLQLADLKDLLDDLKSCSDEIQT SWRHMELYEDSPSSSEHSTGSTLVPHSAGENLEHSLHQSIGTELTAIQIGDQKGGGCDQVVLSGATLDQDMLPSCEEQIN NNGVVSALSSTDFSSPLQVTPLFRSLAAGVPSPQFSESERNFLMKTLGMESSSLNPSAKPSQPPPCKRALLQSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Coils | 4 | 24 | 21 | - | – | |
| Gene3D | 14 | 76 | 63 | 1.2E-15 | – | |
| PANTHER | 15 | 383 | 369 | 1.3E-158 | ||
| PANTHER | 15 | 383 | 369 | 1.3E-158 | – | |
| ProSiteProfiles | 20 | 75 | 56 | 20.713 | ||
| SMART | 24 | 73 | 50 | 1.2E-13 | ||
| SUPERFAMILY | 24 | 118 | 95 | 6.36E-26 | ||
| CDD | 27 | 71 | 45 | 1.35162E-13 | ||
| Pfam | 28 | 88 | 61 | 1.2E-15 | – | |
| ProSiteProfiles | 76 | 126 | 51 | 16.975 | ||
| SMART | 76 | 124 | 49 | 1.1E-14 | ||
| Gene3D | 78 | 157 | 80 | 4.6E-19 | – | |
| CDD | 80 | 121 | 42 | 3.12681E-11 | ||
| MobiDBLite | 328 | 347 | 20 | - | – | |
| MobiDBLite | 450 | 474 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0306800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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