Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0308800 |
| Transcript ID | LotjaGi2g1v0308800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Twin lov 1 protein; TAIR: AT2G02710.2 PAS/LOV protein B; Swiss-Prot: sp|O64511|TLOV1_ARATH Protein TWIN LOV 1; TrEMBL-Plants: tr|A0A126X0H7|A0A126X0H7_GLYGL Putative LOV domain-containing protein; Found in the gene: LotjaGi2g1v0308800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78300282..78306887) extracted from Lotus japonicus Gifu genome v1.2.
AGAAACGTGATCTCATAGTCTCGAATGACGTTGATGCTAGAATCCGCATCATATATATTTTTATGAAAAAAAATATTGAA ATTTGTGTGACTACGGTTTGCTGCGTAGTTGGGAATTTCTTCCTCTCTCATCTTTGTCCCTTTGGTAGTGACAGTGTGTC TTCTCTTGTCTTTGGGTTCATAAAATCAAACCACACAAACACACACAAAGCGTGAATGATTCTTCATCCTTCACAATTCA CCACCACAACTTGAACCAGATATTATTTTTCCTCCATTTTCTTCATCTTCGTTACGCATGCTAACACAGTAGCAAGAGTT TCATACCCCTGTGTTTCAACCCTGTTTTGCATAGCAGCATAGAGAGGCAAAGGCAAGTTCACATGGGATTGGGAACAACC CCAAGGAGGAGAACGATCCACGGTGGTTGCTACTACGCTCATGACGACGGAGTTCGAAGATTCCAAGCTTCTTGCGGTGG AGAGTTCCTTCGACAACCGTTACTCCCGCCACGCGCGCGAGTCGCTCGACGAATTGACTGATACAAGTTTCACCATCACC GACCCTTCCGTCTCCGGCCACCCAATCGTCTTCGCCAGCCTCGGCTTCCTCAAGATGACCGGGTTCTCGCGGGATGAGGT TGTTGGCAGAGGCGGGGGGATGTTCCAGGGGCCGGGAACCTGTAGAAGGTCGGTGATGGCGATTCGTGAGGCCGTAAGGG AAGAGAAGGAGGCTCAGGTCGTTTTGTTGAATTACCGCAAGGATGGCACGCCGTTTTGGATGCTGCTTCTTGTGTGTCCG GTTTTCAGTGCGAGCTCCGGTGGTGTTGTTCACTTTGTCGCCGTTCAGGTGCCGCTTCACCGCCGGAGACACGGGGATTT TCCCGGAGGAGGAGGTGGGGGGTTTTCACAGGTGCATGATTTTGTGTTCCGGTGTTGTCGGAAGGAAGTGTGCTCTGATT CTTTGGCTGAACTTGGTCGTGTTTCTTCCCTCAATCAAGTGTTGGAGAATGATGTCACGGGTTTGTTTGTTTCTTTGTTT TCAGTTTCCCGCATAGAATTGAATTGAATGCTTCATGTTCATGGTTTGTTTAGTACCCTGTTTTGGTAGTTACACACTTA TAGGGAATTAAATTACTAGTTACAACTTGAATTGATTGGTTAATTGATTAATTAACTATAGATGAATGGTTTTTGTTTAT CAAGTTTCATTATGTGACACTCCCAGATTATATAGCTCCTTAAGGGGCTCTTGCTGAGTGTGATTGTTTATTTTGTACTG GTGGTTTGGGTTTTCTATATTGTAGGTGCTGATTTTTAGCTTCATGGCATGCAGAGTTGGAGAGTGAAGAGCCATGTGAG GCAAGTGATGTTGAGAAGAGTAGAGCTGTGACTGCCTTGGACAACATCTTTTCTGTGCTGACCTACTATAGCGAGTCCGT GGGCAGATTGGTGTGTAGAAAGAGATGCAGCGTTCCCGACGTGGGTGTTTTTAGCTCATCCTTGATTATTTCTCTTGGTA GAATCAAACAAAGCTTTGTATTGTGAGTTATTTGAAAAAGTCTAGTTATCTTACTTCAGCATGATCTTAATGCCCTTTGT AGACCCTTAATTTGTTATATGTTGTTTGTTTGAATTTGAGTTTCCTCGCAGAACTAATCCGAATTTGCCAGACATGCCTA TAGTCTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTCTAAAACCCTTTCCTTGAACAAACTAATAATACCCTTGTGA TAGTTTAAAGCAAATTTGATGGCATCTGAGGTTAACTCGAGTTATGTTTTCTATTACCCTGTATCTTGAATAGGTTATGC AAGAGATGAAGTATTGGGCCGCAACTGCAGATTTTTAGGAGGAACAGATACTGATACCACAACTTTACATCTGGTAATAC ATTTTTTCTTATCATAGTTCTTCAATATTTGTCTTATAAATTGCCAATTTAGATTATTGGTAATGGACCATCTGGTTCTG TCATTTCCTTTTTGCTTACAGATTCGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGTT AATACTTTCATTGAATTCACTTGTCTGTACTGCCAAAGCTGTGATTTTTTGGATGTGCTGAATCAATTTACTGCATTACT AGCAGGAAAGATAAAAGCTCATTTTGGAATCTTCTTCACATGTCACCTGTTCGTGAGGCTTCTGGCAAGGTAATCTTGAC GAGCTATTTATTAGTTAAACTATGGAACTCAAATGTCTCTTTTATTTTCCATTTCTATCAGACATTTGTTTTTGCTCCTT CTGATTGGGCATGGGAATTTATAAAATAATCAAACCTGAATATGATCTTCATTGTGCATCTTTGGCAATTAGAAGACTTC TTTTCTTTTGGCTGCTTTGACAGTTTATTGATATTTCAATCAGTCAGGTCCTAATGCACAACTTTATTAAAATTTATAGA AATCGTTATGTTACTTAAGTTATTGAAGTATCTGTTTTATGAATATAAATTGTGAAGCTTCTCATATTCTTTGTTGGTTT AAGCAAGTGATTTACTAGTACACTGTACAAGGGCTGGGGAAGCTAATAATTCATAGTTGATGTGTCGTTGACATCATTTT ACCATGGTAGTAGGCAGTAGCTATTATTTCTTGGCTAGGTTGTTAAGAAGGTAATGATCATTATAGTTACTAACTGATCC TATTTTCTTGTTGTTACCAGTTGTGATTTAGGATCTCCTCCTCCAGCCCTACTTTTTTTCCCTAAATGATCAAGTCAGCT AATTTTTAAAAGTCACCATTTATTCAGATTGGCTAAACGGTTATCATGGCTGTGATTATTGTGTAATTTATTAAGGCGTA TCATCCGATACAAACCTTTTAATGCATAGAACTATAGATTATCAGTTGGAAATTAGAGTTGATGTAATCTGATTGCTCAA GTGTTATGGTGAAGAGTAATAGCTTCAATTGACAAATTGTAGACAATAGCTTAGTATATATTTATCATAATTCTTTCCTA ATTAGATATTTTGGATATTTTTTATGTTCCATTGAAGTGCAAGGTAACAATTTTACATGTCAACCTTTGGTCATTTGTTT ACCTAATTGGTATCTGGATTTTTACCCTCTCCTTTTATCTGTGATTAAGGATGAAAAATTCAGAGTCTTGCCTCCTCCCA TCCTATTTATTCTCTTCAGAAGTGACTGAGTAGTCCAGGCTTTGAAGTTTGAGTTACTAATTGTCATAAGTTAATTGGCT AACTTCGTTTTCACATGAATGTAGTCCTCACTTCTATGTCTGTATGGGTCTATGCTGATTTAAGTTTGTCACGGATCCAG AACATGTATTTAGGGAAGAGCCCCTTCTGCATCTTATGAGGGTTTTACTTGTGTATCCATCATGTGATGGTCCTCCACAT TTATGTGCCTTGAATTTGATGAGTTATTTACCATTGCTACTTCCATACCAGTTAAACTGCAAATCATAGTGCAAAGTGAA AACTACTTTATAATGCCTTCTTTCTGGTGAAACTTTTGGTAAAAGAATTGTCAGTGAACTACTTCTACTTCTTATACTCA CTACTGATGAATTCTCTGTTTGTCCAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGAATATAAAAACGAAGATAG ACCGTGTCGAAACCCTGATAGGAGGCAGCTTAGCGTGGTTGGTGTGGTCAAGGTTGCGGTGAGGAGTTCATCAATGACTG CAGGAACGTCCAAATAGGATAACTCACGGTGGATTCATCGCCTTCAATATATAGTTTCTAAATATTATCTTCTAAAAAAA TGTTTACACATTCGGAAAACTATCCATCTCAACTGGTGATTGTTGAGATGATAGAAATGTGAAAAATTGATGTCAAAAAA ATGAACAATGGTCAATTACAAGAACACATTCTGCGTTTGACGTCTAAAGTTATATTTTACTCAGCTACATTTTGTAATCA ATTAAAGTTTGGAATTGACTTTTCTAATATGACAGGTTACTTAAATTGGTAAAATAAACCATTTTAACTATCTATTAAAT ATTAAAAAATTAATGGTTGAAATTGTTGGTATATTGGAGAACCAGACATACTTTCCAGTCAGTGAAAGAGCAAACAATCC AAGCACATACAAAATGGGTTAAAATATGATATAGTTTAGATCAAGAATCCAGAGTTTAGGCTTAGTTTGTATGAGAATGT AAAAGTGCAAAATAGGATTCACCCAAAGTACTTACTAATTGATAACTTACAAAATGGGATATCACTAATGAAATGAAAAA AGGAATTTAAAGAATGTACAACAATTGATGCCAAAAGAATAGTGTCTGAAACCTATTTTTTTGGTTCCAAAATTCAAACC CACCCCTCTTTCATGTTTTGGGCTCAAACCAAAGTTTTGTTTGCATTCCAAAACCATAAACCCAAAAAAAAAACCAAAGC TATCCATCACTCATCTAACCTGAACCCAGACCGAAACACTTGGAATTCCAGCGTGGACAATATAAAGCATGTAGTACCCA GGTGGGGCCACCGTGAGAGATGGTGGCCCACGCACCGTAACCTTGTAAGAAGACGGCGCCACCTCATCCACCGCCACAAC ATCCAACACCACCACCCGCTGGTTCATAGCAAACGAGTGCGTCGTGAACGACGGCGCCACCAGGGTCACACTGACCCCTG GAACCGCACGGTAATCCCGCAATGAGAACGTCACGGCAAACAAGCCACCATACGGCGCCGTATTGTTCACCGCCTCCACC GCAATAATCGAAGGCCGCAGCGGCTCCGATTCAGGCTCAAAATAATCCGGGTAGTACACGTCCAAGCTCAATTCAGTCGG GTACGGGCCCCGAAAATCGTAAACCCGGTGTGGGTTGCTGCCACCTACTAACACCCTTCCATCTGGCAACAGCACCGCCG CGGAATGATACATTCTCGGAGTGTTCGCCGGAGATAGAAGCTGGAACCTCTGTAACGGGTCAGGCAAACCGGGTCTGTAT AGAACCGGGTAAAAAACCGGGTTCGCCGCGTTTTCCCACCCTGCGGTACCATTTGCTGCGCCGTTCAAGATCATCACGTT CCCTGTAGGCAGCAAGATCATATCGGGCATTACCCGAGGAATGGGCATGGTTTCCATTACCCATCCGGGTTTCGGGTCGG AGACCCGAATCCTCCCGCACGTTCTGGAGGCTTCAAGAAACACTCTGAACCTTCTGGCCAAGGTGAACACGCCGGGGTAA GCGCCGCCGCAGATCATCACCTCGGCGACGGGTAAACGGGTCCTGTCTGGTCCGAACCCGGTGAGGTTCAATGGAAGCAA AACGGATGACCCGGTGCTGGGGTAGTTTCTTTTCTCGATCCCCGGCATGATTGGATACTCCCGGAGGATTCTGTGGCGGT TGTAGTCGAAGAGGACGGAGCGGCGGTTGGCGAAGATGAAGAGGTTGCCGTCGGGTAAGAGATGCAAGAACGGGTAAAGA TTGTTCTCTTCACCCGGGTTCGGGTCACGCGTGAGGCGCAAGAATCGGAGGTAGTGAAACGACGCCGTGTCGCGAGTGGG GACGAATTCGTAGGTGAAGGCGTTGCGTCCTCCGACGACGATGATTCTTCCGTCGGGGAGGATTTGGTTGGAGGCGTACC AGCGAGGGGAGGTGAGATTCTGGGGGAGTTCGAGCCAGTCGCAGAGGTTGTGTTGTGGGCAGGGGGTGAAGGTGCGGAGC TTGTGGTAGCCGTCGTTGAAGCCGCCGGTTTGGAGGAGGGTGCCGTCGGGGGTGAGGGCGCCGGAGGAGCACCATGCGTC GGTTTGGATGGTGAGAGGGCGGAAAGTGTTGGTGGTGAGGTCGTAGAGGACGGAGTGGGCGGTGCAGTCGAGCTTGAGGG CCATGTCACGGGGGTTGAAGCGGCAGCGGCCGTTGGAGAGGGAGATGTTGGATGGGCCGAAGTCGGTGCGGTCGAAGATG ACCACCTTGTTGTCGTTCATGACCTGCATGTGCATGGCTGAGATGCCTATGCTGCGTTGTAGCTGAACCCAGTGCCCCCC TGTGCTGCTGCATGTTGTGGTGATGCAGAACAGCAAGAAGGTGATCATGGTGAAGAAGAGAGAAGAAGAGGCATTGTTCT TGATCTTGAACAATGACGCCATGGTTAGTTTGGTTCTTGGTTCTTCTCTGTTTTGCCAAACAAGATGGACAAAAATTTAT TGCATGTGTAATACAAGGGGTGTACAGTGTACTTTATTTATATAGGCTTGTATCAATGTATTGTATGGATTTATTAGGAA AAGCCTAGTTTGGGGACGTTAGGTAAGATTGTTACCACTTGGTCTGTTAATGAATGGAAGGGTGAATTTATGAAAGGATG ATGTTAATAAATGAGCATGGCAGGCATGTATATATACAGTTTACACTTTACAAGTAGGGGTGGAAAGTGAGTTAATTATG ATTTCTGAGAGAGTACAAATGTACAATGTGTGTGGGGTTAAAAAGGTGGGATGAGGAGTGAGTGAGCGAGCATGCAAGCA GGGACAGTATTGTGTGAGGTCAACTAATTACTTGCAAGTGTAGCTG
CDS sequence (LotjaGi2g1v0308800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACGGAGTTCGAAGATTCCAAGCTTCTTGCGGTGGAGAGTTCCTTCGACAACCGTTACTCCCGCCACGCGCGCGA GTCGCTCGACGAATTGACTGATACAAGTTTCACCATCACCGACCCTTCCGTCTCCGGCCACCCAATCGTCTTCGCCAGCC TCGGCTTCCTCAAGATGACCGGGTTCTCGCGGGATGAGGTTGTTGGCAGAGGCGGGGGGATGTTCCAGGGGCCGGGAACC TGTAGAAGGTCGGTGATGGCGATTCGTGAGGCCGTAAGGGAAGAGAAGGAGGCTCAGGTCGTTTTGTTGAATTACCGCAA GGATGGCACGCCGTTTTGGATGCTGCTTCTTGTGTGTCCGGTTTTCAGTGCGAGCTCCGGTGGTGTTGTTCACTTTGTCG CCGTTCAGGTGCCGCTTCACCGCCGGAGACACGGGGATTTTCCCGGAGGAGGAGGTGGGGGGTTTTCACAGGTGCATGAT TTTGTGTTCCGGTGTTGTCGGAAGGAAGTGTGCTCTGATTCTTTGGCTGAACTTGGTCGTGTTTCTTCCCTCAATCAAGT GTTGGAGAATGATGTCACGGAGTTGGAGAGTGAAGAGCCATGTGAGGCAAGTGATGTTGAGAAGAGTAGAGCTGTGACTG CCTTGGACAACATCTTTTCTGTGCTGACCTACTATAGCGAGTCCGTGGGCAGATTGGTGTGTAGAAAGAGATGCAGCGTT CCCGACGTGGGTGTTTTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGAA TTTGCCAGACATGCCTATAGTCTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAGAGATGAAGTATTGGGCC GCAACTGCAGATTTTTAGGAGGAACAGATACTGATACCACAACTTTACATCTGATTCGGGAAAGCATTAAAACTGAACAA CCATGCACAGTACGTATTTTGAATTACAGGAAAGATAAAAGCTCATTTTGGAATCTTCTTCACATGTCACCTGTTCGTGA GGCTTCTGGCAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGAATATAAAAACGAAGATAGACCGTGTCGAAACC CTGATAGGAGGCAGCTTAGCGTGGTTGGTGTGGTCAAGGTTGCGGTGAGGAGTTCATCAATGACTGCAGGAACGTCCAAA TAG
Protein sequence (LotjaGi2g1v0308800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTEFEDSKLLAVESSFDNRYSRHARESLDELTDTSFTITDPSVSGHPIVFASLGFLKMTGFSRDEVVGRGGGMFQGPGT CRRSVMAIREAVREEKEAQVVLLNYRKDGTPFWMLLLVCPVFSASSGGVVHFVAVQVPLHRRRHGDFPGGGGGGFSQVHD FVFRCCRKEVCSDSLAELGRVSSLNQVLENDVTELESEEPCEASDVEKSRAVTALDNIFSVLTYYSESVGRLVCRKRCSV PDVGVFSSSLIISLGRIKQSFVLTNPNLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLGGTDTDTTTLHLIRESIKTEQ PCTVRILNYRKDKSSFWNLLHMSPVREASGKVAYFVGVQIEDEYKNEDRPCRNPDRRQLSVVGVVKVAVRSSSMTAGTSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 111 | 111 | - | – | |
| PANTHER | 14 | 400 | 387 | 3.5E-156 | – | |
| PANTHER | 14 | 400 | 387 | 3.5E-156 | – | |
| ProSiteProfiles | 21 | 70 | 50 | 8.848 | ||
| Gene3D | 36 | 147 | 112 | 5.9E-32 | – | |
| SUPERFAMILY | 38 | 136 | 99 | 1.19E-16 | ||
| Pfam | 44 | 136 | 93 | 2.2E-13 | ||
| TIGRFAM | 49 | 134 | 86 | 2.9E-6 | ||
| CDD | 49 | 135 | 87 | 0.00236033 | ||
| SMART | 99 | 142 | 44 | 8.4E-4 | ||
| Phobius | 112 | 134 | 23 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 135 | 400 | 266 | - | – | |
| Coils | 178 | 198 | 21 | - | – | |
| Pfam | 260 | 359 | 100 | 1.5E-17 | ||
| Gene3D | 260 | 395 | 136 | 5.3E-43 | – | |
| SUPERFAMILY | 263 | 359 | 97 | 7.54E-23 | ||
| CDD | 269 | 358 | 90 | 1.04375E-8 | ||
| ProSiteProfiles | 273 | 295 | 23 | 10.683 | ||
| TIGRFAM | 273 | 358 | 86 | 1.8E-10 | ||
| SMART | 323 | 363 | 41 | 0.026 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0308800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…