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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0309100 |
| Transcript ID | LotjaGi2g1v0309100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT3G01470.1 homeobox 1; Swiss-Prot: sp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT5; TrEMBL-Plants: tr|A0A0L9VNR3|A0A0L9VNR3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0309100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78372487..78375778) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAGGGGCAATATGGTAACTCAAAACCCTTATGTCAAGGCTTTCCCTATCCCAAAGGCAGACCAAGGCTCCCAATATA ACCCCATCAAAGTTCCCCACCACACAGAAGAATCTCTTTCTCACTCACTCTCTCTTTCTTTCTCATCATCAAATCAAATA TTTCCAACTCTCATCAACTCTGTTCTCTCCTCCCTCCACCTCTGTCCTTGTGTCCCCATTCCAAAAACTCACATCATAAC CCTCCTCTGCCCCTGCAATTTATTCAACACCTTCTGACAAACCTCTTAATTTTCTCTTGCAGTTCTTCCACTGAGTGATG GGTATGATCTCTCCTCACTTCCACAACTCCCACATTATAGTTCTCCTTATCACCTGCTTCTTCCGCCATAAATTCTAGAT CAAAACAAACAACCCCACACAGTCACACCCCTGAAACCTGATCCACCTTTTATGGGGTATGCTATGATTGTGAATATGAC CTTTTAATCTAATACCTCCACCTTTGCAACAAGGCTCCACACAAAGTACTACTACTCCAAAAAGTTCCCATAATTCCCCT CTCTAGTGAAGTTACTATGGCTGGTAGTAAGCTTTATGGGGGTTCCAACATGGCCCTTCTGCTCCAAAATGAAAGGCTTC CTTGCTCCTCTGAAGTTCTTGACTCTCTCTGGGGTCACACCTCTAACCCTGCTTCTTTCCAAGGTAAACTCTATTCTCTA TTCTCTTCCTTCTTCAATTTTTGTCCATCTCTTCACTTAGTCATGAAATTTCACAATTCAAAGTTTTCTCAGTGGTGTGT CTAATTGTTATGTGTTTGTTTTTTTTTTACTATATGTCTATATGAACAAAACCAAAGTGGGGTTTTTTTTTTCAGGACTC TTGTTTCATTATGAAATGAAGAACCCATCAAAAAAATTTGATTTTTAACACTATTCTGATGTAAAACATGCAATATGATT GAGATTTTAACATGGTTGGTGTTTGTTTGCTTTGATTTCAGGGTCGAAATCGGTGGTTGATTTTGAGAATGTTGGTGGCA GCAGGGTCACTGACAGGTCCTTCTTTCAACAGCTTGACAAGGAAGAGAACTGTGATGATGATTATGATGCTTGCTTCCAT CAACCAGGGAAGAAGAGAAGGCTCTCTAGTGAACAAGTTCAGTTCCTTGAAAGGAGCTTTGAGGTGGAAAACAAGCTTGA ACCTGAAAGGAAGGTTCAGCTTGCAAAAGAGCTTGGGTTGCAGCCAAGACAAGTGGCTATATGGTTCCAAAACCGAAGGG CAAGGTACAAGACCAAGCAGTTAGAAAAGGACTATGGCACATTGAAAGCTAGCTTTGACAGACTCAAAGGTGACTATGAT AATCTTGCTCAAGAGAATGACAAGTTAAAAGAAGAGGTAAAGCAAAAAAAATAGCACTCACAAACATACACACTCTCTAT TCAGCTTTTCTGCTTTATGTTGCTATGACTTATGATATGAGTTATGAGCTCTTCTTTACTTTAATAAAGTCTTAACATTT ATCATCCCCATAATGGGATAATGATTGAACAGGTGAATTCTCTGAAGAACAAATTGATTCCCAGAGATAAAGAGAAAGAG AATTCAGATGACAAGTCATCCCCTGATGCTGCAGAACCTATGGATTTAATCTCAAATGCAAATTCTGAAAATGGGTCCAA AGTGCCACTCCCTAATATGGTAACATGCTGCAAGCAAGAAGATGCCAATTCAGCTAAAAGTGATGTGCTTGATTCGGATA GCCCACATTGCACTGATGGGAACCACTTCATGGAGCCTGCTGATTCCTCTCATGCTTTCGAACCAGACCACTCAGATTTC TCACAGGATGAAGAGGATAACCTCGGTGAAAACCTCTTGAACCTGCCTTGCTTGCCAAAGGTTGAAGATGTCTGTTATGA TGACCTGCCTGATAACTCTTGTAATTTTGGCTTCCCGGTTGAAGATCAAACCTTCTGTTTCTGGCCTTACTGAATCCCTA CGCTCCCAGGGTTATAAATTGCAGTCCGCAACCGCAATTGTGGCGGCAGCATAAAGCGTTTTGGACTCTCAACATTAGCA TCATAGCCACAATTGCAGCAGCATCAACTCCTACTTATCAGTAATTCCGTGACCGTAATTTAAAACCCTGCTACTTTCAC AATGTTTAGAGAAAGTTCCTAGTTGTAACTCTGTACTAGAGGAAATAAAAACAGTATTACTTCTACTAAGGAATAAAATC AAACAGGTACAAGGCATTATGCAATTGACAAGGAACATTACTAAAACTCTTCTTTGCCATGTCCAAAGTTTGAAAATTAG GTTTTAAAAAAGCCATGTGTCATACACAAGCAAGTATCATTAGCAGTGAAAAGGTACAAGTTAATTAGTAGCTAAAATTC AAAACTAGCAATATGAGTCTAGTGTCCCAAAATTTCAGATAGGGTTTCATAAATCATAACCAAATAATTGTTTTACTCTT GGATGTGGAAAGTGGAAGCTGCTCTGTTTCTATCTATCTGGATTCCTCAAAATCTCACCGTTGTTTTACTCTTGTATGTG GAAGACACTTTATCAATCATTAGTACTCACTACTTTGCAGAGGATTGTTATTTTATATACTTTCTAGCCTATGATGAATT GATGATTATGCATGTTATAAAATATTTGGCATATATGTTTAAAGGTAAATTCCGTGAACCTTGGGTGCAAACCATGTTTT ATAATTAATTGATTAGAAAATTAACTAGTTAGAAGAAGATGTTACTTACATTACAAGTCACATCCAATTTGTGTGAATTC AATTTAAATATAATATGTTTGTGTGAACAGAGGTGACATCCATTGAAGGCCGTGATAGTTGTTTGATACTTGTCCCTGAA GAAAGATTAATTGAATCACCTCAGAAGCATTCCCACGAGTGAAATTTAACTTCAACAAGTAACTGTGCGCTTGTGAGTCT GTGAGCGAAACTGAGGTTGAAATCAAAGAAAAAAGAGGCATGGAAAAGATTGTGAATACTGAACCCTGCTACAGAAGTCA AGGTTTCTGGTGTGGTTCACTAGAAGAAAATTGGATATGTGAGGACTTTTTTAGCCATGCTAGCTCATTGATGATGTTGA CACCTTAGTCTCTCTTTTTTAACCAGTTGTATCATTTGATTCGCCGAAGCATTCATGTTCGAGTCGGGTAGAATAACTAT GAACAATAAAACTTTTTTCTATTAAGTATTTAACGCACTTACAATTATAATAATTCGAACATGAGACCTCTTCTTATACT ATAACATTTTCG
CDS sequence (LotjaGi2g1v0309100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTAGTAAGCTTTATGGGGGTTCCAACATGGCCCTTCTGCTCCAAAATGAAAGGCTTCCTTGCTCCTCTGAAGT TCTTGACTCTCTCTGGGGTCACACCTCTAACCCTGCTTCTTTCCAAGGGTCGAAATCGGTGGTTGATTTTGAGAATGTTG GTGGCAGCAGGGTCACTGACAGGTCCTTCTTTCAACAGCTTGACAAGGAAGAGAACTGTGATGATGATTATGATGCTTGC TTCCATCAACCAGGGAAGAAGAGAAGGCTCTCTAGTGAACAAGTTCAGTTCCTTGAAAGGAGCTTTGAGGTGGAAAACAA GCTTGAACCTGAAAGGAAGGTTCAGCTTGCAAAAGAGCTTGGGTTGCAGCCAAGACAAGTGGCTATATGGTTCCAAAACC GAAGGGCAAGGTACAAGACCAAGCAGTTAGAAAAGGACTATGGCACATTGAAAGCTAGCTTTGACAGACTCAAAGGTGAC TATGATAATCTTGCTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAATTGATTCCCAGAGATAA AGAGAAAGAGAATTCAGATGACAAGTCATCCCCTGATGCTGCAGAACCTATGGATTTAATCTCAAATGCAAATTCTGAAA ATGGGTCCAAAGTGCCACTCCCTAATATGGTAACATGCTGCAAGCAAGAAGATGCCAATTCAGCTAAAAGTGATGTGCTT GATTCGGATAGCCCACATTGCACTGATGGGAACCACTTCATGGAGCCTGCTGATTCCTCTCATGCTTTCGAACCAGACCA CTCAGATTTCTCACAGGATGAAGAGGATAACCTCGGTGAAAACCTCTTGAACCTGCCTTGCTTGCCAAAGGTTGAAGATG TCTGTTATGATGACCTGCCTGATAACTCTTGTAATTTTGGCTTCCCGGTTGAAGATCAAACCTTCTGTTTCTGGCCTTAC TGA
Protein sequence (LotjaGi2g1v0309100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSKLYGGSNMALLLQNERLPCSSEVLDSLWGHTSNPASFQGSKSVVDFENVGGSRVTDRSFFQQLDKEENCDDDYDAC FHQPGKKRRLSSEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKDYGTLKASFDRLKGD YDNLAQENDKLKEEVNSLKNKLIPRDKEKENSDDKSSPDAAEPMDLISNANSENGSKVPLPNMVTCCKQEDANSAKSDVL DSDSPHCTDGNHFMEPADSSHAFEPDHSDFSQDEEDNLGENLLNLPCLPKVEDVCYDDLPDNSCNFGFPVEDQTFCFWPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 319 | 319 | 1.9E-156 | – | |
| PANTHER | 1 | 319 | 319 | 1.9E-156 | – | |
| SUPERFAMILY | 75 | 143 | 69 | 1.17E-19 | ||
| Gene3D | 80 | 147 | 68 | 4.0E-18 | – | |
| ProSiteProfiles | 81 | 141 | 61 | 17.491 | ||
| SMART | 83 | 145 | 63 | 8.9E-19 | ||
| CDD | 84 | 142 | 59 | 8.54599E-19 | ||
| Pfam | 86 | 139 | 54 | 1.6E-16 | ||
| PRINTS | 112 | 121 | 10 | 4.9E-6 | ||
| ProSitePatterns | 116 | 139 | 24 | - | ||
| PRINTS | 121 | 137 | 17 | 4.9E-6 | ||
| Pfam | 141 | 182 | 42 | 2.4E-17 | ||
| Coils | 154 | 181 | 28 | - | – | |
| MobiDBLite | 179 | 219 | 41 | - | – | |
| MobiDBLite | 179 | 200 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0309100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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