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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0310800 |
| Transcript ID | LotjaGi2g1v0310800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-galactosyltransferase-like protein; TAIR: AT5G62620.1 Galactosyltransferase family protein; Swiss-Prot: sp|Q9LV16|B3GTJ_ARATH Hydroxyproline O-galactosyltransferase GALT6; TrEMBL-Plants: tr|V7CKY1|V7CKY1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0310800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78498383..78504582) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTCATCTTCATTTTCTTCATCATCTTCTTCAAAAAATTATAACCCCAACAATAAACAATAAAATCCCAAAAACACC AAATCTAATTTCCCAGGGTCTTCATCATCATAACTAAGTCCATAAATAATCAAAATCCAGAAAACAAAACCTCATCCCCA CCATAACCGCCCCAAACATAAACAGAACAAGAAAAAGAAACCCATAAGTGCTGGTGGTGGCCAAGAAACCCAGAAATGGT GGTGGTTTTGTTCCTCCTCCTCACTGTAGCACATATCTTCTTTCATTTCCTCTTATTTTCCCCACTGCCTGCAACGTTTG GTATTTGCAATACAGACAAAAATGGAGGTAGCAGAACATAAGTAGTAGTTGCAACACAGACAAGAAGAAACACAACAAAA CAGCAACATCATCTTCTCCTTCTCCTTCTCCTTCTCCCAACCGAAACCCCCATCCCCAACCCAACCCAACCTGCAACCGA AACTCCAAAAGCTACCACACCTCCGCCTCAAGCACCACTCCAAATCTGCAAACATATTGGCTTCAACCCCCACCTAGGTT GCGGGTCGGATCTGGGTTGTTTGGCAACCCGGATCTGGAAACGCGGAGCATGTGCGACGCGGCTCGGCTGTGGGGCGTTG GTGTGGCTGGATCTGCACCTGGAGCGTGTGCGACGCGGCTGAGGAGAGGAGCGGTGACACGGCGGCGCGAGGGCGGCAGA AGTTGACTTGCAGCGGCGACGCAAGGATTTGAAGGGCATCGCCATTTCCTTCCTCTTTTTCCTTTTTCTCTCACAAACAA TCACTGCCTTTAGAAGAAGAATAAGAAGGTGGTGTTGGGGTGGGGGTTGCAGATGGTGTTTGGGTTTTCATGGGTCCTTT GGTGATGATGAAGAAGAAGAATAAAAAGATGAAGGAGGAGGAAATGAATTTCTGGGTTCTACAGGAATTAGGAAATTAGG TTTTCTAATTGGGGGAAACAATCTTTGTTAATCATATTAGTGTTAGTAAGTTAATTAGGACTAGTTAGTTTTTAGGGTTA ATTAGGGGTCAATTAAATAAATATAACTGATTTGTAAATTTTTTTAATTTTTTAATTTTTTTTCCTTGACACGTCAGCCT CATTTATCCAGTCAACATGTCAATTCATCACTCGCCGGAGCTCCGGCCTCCGGCGAGGACCTGCTCCACACACTTTACAA ATAAGAGGACCCAGATTTGCAAATTTTCCGGGGAGGGACTAATTTCTGACGGCGAGACAAAGACAGGGACCTATTAGATG ATTAACCCTAAAATAAAAGACACACAGCAAGCTTTCATTCTTTTTTTTCCTCTCTTCTATGCATTGATTCGTGTGAGTGG AAGAAGCAAGCTTTTTCCACTATTTTGCCCCAGGTGCATTCCCCCTTCAAGGGTTAACATTCAACAAAAGCTTCCAACTT TGTTCAACAAACCCAGAAAAAAACAACCCCACCCCATTGATTCTGTGCCACTAGGTGGTGAAAAAGCTTGAATCTTTGGG GAAGTTGAAACCTGAAAACCCCACCACACCACACCCCATTGATTCTATTCCACTGGGTGGTGACAAAGCTTGAAACTTTG GGGTGTTGGAAGCAGAAAACTTGAAGAAGATGAAGAGGGGTATCAAGCTAGACCCATTTGGGCTACCCAACAGGCTCACA CTGGTTCAAATTTTCATGGTGGTGATGCTTCTCTACATGCTCTTCATGACCTTTGAAATCCCTCTTGCTTTCAGAGCTGG ATTAGCCTCTGAGAACAGTGCTTTGGGGCTTCTCACTGATGCATTGCCAGTGACAGTGCCACTGTTGCTAGAAGAGAACC ACCAAATTGAAGCTTCTGTGGTTTCCACCTTGAGCTTCAATGGAACCTTCTCAGGGGACTCTGAACTTCACAAGGTGGCT AGTCACGCATGGCTTGCAGGGAAGAAGCTTTGGAGTGAGGTGGAGAGTGGGAAGGTTGAGATGTTTTCTTCCAAGTTGAA GTCTGAGAATGGTTCTGATTCGTGTCTGAATTCTGTTACGCTTTCTGGGTTTGAGTTTCGTGAGAAGTTCAAAGGGGTGA TGGTGTTGCCTTGTGGGTTGACCCTTTGGTCTCATGTGACTGTTGTGGGGACTCCGCGGTGGGCTCATGCGGAGCGTGAT CCTAAGATAGCGGTGGTGAGGGATGGAGATGAAGCGGTGATGGTGTCGCAGTTCATGTTGGAGTTGCAGGGGTTGAAGGC TGTGGATAAGGAGGAGCCGCCAAGGATACTGCATTTTAATCCGAGGTTGAAAGGGGATTGGAGTGGGAAGCCTGTGATTG AGCAAAACACTTGCTATAGGATGCAGTGGGGTTCTGCTCTTAGGTGTGATGGGTGGAAGTCTCGTGCGGATGAGGAAACT GGTGAGTGTTTGTTCATTGCATGATCATGTTTTTGTGTTTGTTTTTTCAATTGTGTTCAGGATAAATGATGTAGAGATTC TATTAGTTGATTTATGGGGGTTGGAAGTTTATTTTAGGGGGTTTCATTGTAGATGACAATGGGGACTCTCTTTGCAGATA TGCATTGTAGTTCTTAAGTTCCATGAACTTGGTTTGTATAGTCTACATTTCACTTTCTGTTCTGTGCTGTGACTGTGAGT TAGGAAAGAGAAAAAAGGATTTAATTTTGATCCAACTTTTGTATGATCTCAAACGATGATTGACTGCCATAACTACTATC TCAAAGGTCTAACTTTTTAAAGTGTGCATGATTGCAAATTCTTCTACAATTATTGATTCTAAATCCAGAATCAATTGTGG GAGGAAGCTTCTTTCAGTAGTTTTTGGGTGCCAGAATTAAGTCCTGAGAAAAAAAGAAGCTGATCCAAATATGGTCAAAT TGCACTCCGTCATTATCATTTTCATTCTCTTTGTTGAATCTGTACATTTTGTATGCTTTTTTTTCTTCTTGTTCCAAGCG ACATTGTTTGTCTTTGCTGATTTGCTTTGATGTTATGAAGTTGATGGGCAGGTTAAATGTGAAAAGTGGATTCGAGACGA TGATAATCATTCTGAAGAGTGGAAGGCAACATGGTGGTTGAACAGACTGATTGGGCGAAAAAAGAAGGTGACTGTGGACT GGCCATATCCTTTTGCAGAGGGGAAATTGTTTGTTCTGACCATAAGTGCTGGCTTAGAAGGCTACCATGTTAGTGTGGAT GGGAGGCATGTGACATCCTTTCCCTATCGCACCGTGGGTACACTTATCATATCTCTTTCTGCTGTATGAATGCAGGAATT TCTTTAGTGTTTATGTTATATTCATATTTCACAGGGCTTTACTCTTGAGGATGCTACTGGACTGTCCATAAATGGGGATG TTGATGTGCACTCCATATTCGCTGCTTCCTTACCTTCTTCACATCCTAGCTTCGCTCCGCAGATGCATCTTGAATTGCTT CCTCAGTGGAAAGCTCCTCCTCTTCTCAATGTGAATGTGGAGCTTTTCATTGGCATCCTTTCTGCTGGAAACCATTTTGC TGAAAGGATGGCAGTGAGGAAGTCCTGGATGCAACATAAGCTAATCAAATCTTCAAATGTTGTGGCTCGGTTTTTTGTTG CCTTGGTAAGAGTGACTGCATTCTCCTACCCACAAATTATGATGAAAATAATCAACGAATGCATAATGGTTTTTATCTTA CTTTTTTCTATTTCTCGTATGATAGCATGGAAGGAAGGATATGAATGTGGATATAAAGAAAGAAGCAGAGTATTTTGGTG ATATTATTATGGTCCCTTACATGGATCATTATGACCTTGTTGTGTTGAAAACTATAGCTATCTGTGAATACGGGGTAAGT GATAGGAGAGGCAAATTGTTGCTTTTTGTATATATATATATACATTTCAAAATTTCACGCACCCTTTGATCTTGCAATAT TGTTGGTTGTTATTGACACACTTTGTTGCAGATTCGAGCAGTTGCTGCTAAGTATATTATGAAGTGTGATGATGACACAT TTGTCAGAGTGGATTCTATCATAAGCGAAGCAAGACAAGTTCAAAGTGATAAAAGTCTTTACATGGGAAATATGAATTAC CACCATAGGCCTCTTCGACATGGAAAATGGGCTGTAACTTATGAGGTACGATTTTACTTTTTGGGTTTCTCTGCATTTGG GACTGCTCAGTTGCTTTTAATTTTCTTTTGATGCCTGTGTTGCTTATCATATGTTGTTGGATTTTGATGCACTTCTCATG TGGTTTCTAGGTTTTAAATACTTGCTTCGATTGGTTTTTTTAGTAGTGCATGGCTGTAAATGTCATGAGATGCTGTAATT GTGGTGGTTGTAATCTAACTAATTTTGCGTTTTCTACTTCTCCATGCTGTGTACTTGGATTTGAACTTTCTATGACTGAT TTTAGGTTTATTGTTAGCATTTGAAAAATTTGTTAGTGCTCAAATATCTTTGTATAAAATCAGTTTAGAGGTATTCGGCT TTAATTAATAGTATAAGTCATGTCATTTGCCATTTGTTGTCAGACGAGTTTTGTTAGTTGACTCATTTGAATTGTACATC ATTATCTTAAGTACTGTAATTTATTTTTAGTGTGTGCTGGGATATTCTGATTGGATTATTACAGAACATATACTTAACTG AATTCTCCATTCAGGCCTGAGCGGCAGAGTTTCACATAATATGGCTTCGATTGAATGAGCTAAAGTTACAGGCTTTTGGA AATTCTATGCAATAATATTGAATATTGATGACATTGTCATTCATTGTCTTGGTGTTGGTGTTGGTGTTGGTGTTTTAGTT TCGTTTATGAGACTCAGAAGTCATCTCATGTTCTCTGTAAAAGTTGCTGACTTTTTTTCCCAACTTTTTCCCATAAATTT CAGGAATGGGTAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGTTATATAGTCTCATCTGATATTGCTCAGTTCAT TGTATCTGAATTTGAGAAGCGCAGATTAAAAGTATGTCTGCAATTCATTGTCCCTTTTTTCCTATTCTGTCTATGGTCTC TACCTCTCAATGTGCTTTGTTGTATGTTCACGAATTCATGCATATGATTATCAGTATGTTTGGTTTCATGCTGAAATATT TCATAATCACTTCCCTCCCACCAAAGCTACAAGAAGTAGTTACTAATTTACTAATTACTATCAGAATCACTTCTCTCCTC AGTATGAAAACTAATCAGTTTTCCAAACACACACTGATAACATATTCTAGTTTATGCATATATTTAAGGACCGGACGGTG TTGGATATTAGTTTAACCAATTTCAATGCGGTGCAGTTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCA GTTCAACATGTCAAGACAAGTAGAGTATGTGCACAGCTTGAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACCG CTCATTACCAATCTCCGCGACAGATGACCTGCATGTGGGATAAATTGCAACATCAAGTGAGACCACTATGTTGCAACATG AGATGACAAAAGAGGTTGTAAGTAAAAAAAGATCGAAGCACAGCTAGGCTAGGCAAGTTCTATGGTCATAATATATCTCT GTAAATACGCCCTTTCTTTGAAGGGTTTGTTTTGGGGGGTTACTTTGGTATCATGAAGACTGTTGTGCCTATTGGTTTGT TGTTTTGCCCCACTTTTTGATCCATCCCCCCAGGTATATCACATGTAGAGTTATAGTTGGGAAATGCAGAAACAACAATT GGTGAAGGAACAAATCAATGGTTTGTAAATTTTGTAACATCATAGGAGCAAAATGGCGCACAGGCGCAGAAGCAGAATAA GTTTTTTCTGCATTAACTTCATTTCCCTATGTTCCTTCACGCATGAGTTGTTGCTGCAGAAAGAAGAGGGGTATCAAGTG TCCTATGAACACTGCTATTTTGGAAGGCCAAAGCATGATGGTATCAGTACTCGAAAAACTTTAGTCCCGAAGTTCATTTT TATTTCATAGTTTAGTATATTTGAGATATTCATAGGGAAATTTTAGATTGGTGAAAAGGTAAATTTAGTGCAGAATTAAT GTTAAAGGAAAATAAGAAATAAATAGAAGGGTCTCCATCCAAGATGAGGGGCATCGATTGTTCGCAATACTCCCTTTGTA ATTTGTTCCTATATATCCTATAAATCTATCTCTCTTTTTT
CDS sequence (LotjaGi2g1v0310800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGGGTATCAAGCTAGACCCATTTGGGCTACCCAACAGGCTCACACTGGTTCAAATTTTCATGGTGGTGATGCT TCTCTACATGCTCTTCATGACCTTTGAAATCCCTCTTGCTTTCAGAGCTGGATTAGCCTCTGAGAACAGTGCTTTGGGGC TTCTCACTGATGCATTGCCAGTGACAGTGCCACTGTTGCTAGAAGAGAACCACCAAATTGAAGCTTCTGTGGTTTCCACC TTGAGCTTCAATGGAACCTTCTCAGGGGACTCTGAACTTCACAAGGTGGCTAGTCACGCATGGCTTGCAGGGAAGAAGCT TTGGAGTGAGGTGGAGAGTGGGAAGGTTGAGATGTTTTCTTCCAAGTTGAAGTCTGAGAATGGTTCTGATTCGTGTCTGA ATTCTGTTACGCTTTCTGGGTTTGAGTTTCGTGAGAAGTTCAAAGGGGTGATGGTGTTGCCTTGTGGGTTGACCCTTTGG TCTCATGTGACTGTTGTGGGGACTCCGCGGTGGGCTCATGCGGAGCGTGATCCTAAGATAGCGGTGGTGAGGGATGGAGA TGAAGCGGTGATGGTGTCGCAGTTCATGTTGGAGTTGCAGGGGTTGAAGGCTGTGGATAAGGAGGAGCCGCCAAGGATAC TGCATTTTAATCCGAGGTTGAAAGGGGATTGGAGTGGGAAGCCTGTGATTGAGCAAAACACTTGCTATAGGATGCAGTGG GGTTCTGCTCTTAGGTGTGATGGGTGGAAGTCTCGTGCGGATGAGGAAACTGTTGATGGGCAGGTTAAATGTGAAAAGTG GATTCGAGACGATGATAATCATTCTGAAGAGTGGAAGGCAACATGGTGGTTGAACAGACTGATTGGGCGAAAAAAGAAGG TGACTGTGGACTGGCCATATCCTTTTGCAGAGGGGAAATTGTTTGTTCTGACCATAAGTGCTGGCTTAGAAGGCTACCAT GTTAGTGTGGATGGGAGGCATGTGACATCCTTTCCCTATCGCACCGGCTTTACTCTTGAGGATGCTACTGGACTGTCCAT AAATGGGGATGTTGATGTGCACTCCATATTCGCTGCTTCCTTACCTTCTTCACATCCTAGCTTCGCTCCGCAGATGCATC TTGAATTGCTTCCTCAGTGGAAAGCTCCTCCTCTTCTCAATGTGAATGTGGAGCTTTTCATTGGCATCCTTTCTGCTGGA AACCATTTTGCTGAAAGGATGGCAGTGAGGAAGTCCTGGATGCAACATAAGCTAATCAAATCTTCAAATGTTGTGGCTCG GTTTTTTGTTGCCTTGCATGGAAGGAAGGATATGAATGTGGATATAAAGAAAGAAGCAGAGTATTTTGGTGATATTATTA TGGTCCCTTACATGGATCATTATGACCTTGTTGTGTTGAAAACTATAGCTATCTGTGAATACGGGATTCGAGCAGTTGCT GCTAAGTATATTATGAAGTGTGATGATGACACATTTGTCAGAGTGGATTCTATCATAAGCGAAGCAAGACAAGTTCAAAG TGATAAAAGTCTTTACATGGGAAATATGAATTACCACCATAGGCCTCTTCGACATGGAAAATGGGCTGTAACTTATGAGG AATGGGTAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGTTATATAGTCTCATCTGATATTGCTCAGTTCATTGTA TCTGAATTTGAGAAGCGCAGATTAAAATTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAT GTCAAGACAAGTAGAGTATGTGCACAGCTTGAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACCGCTCATTACC AATCTCCGCGACAGATGACCTGCATGTGGGATAAATTGCAACATCAAGTGAGACCACTATGTTGCAACATGAGATGA
Protein sequence (LotjaGi2g1v0310800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRGIKLDPFGLPNRLTLVQIFMVVMLLYMLFMTFEIPLAFRAGLASENSALGLLTDALPVTVPLLLEENHQIEASVVST LSFNGTFSGDSELHKVASHAWLAGKKLWSEVESGKVEMFSSKLKSENGSDSCLNSVTLSGFEFREKFKGVMVLPCGLTLW SHVTVVGTPRWAHAERDPKIAVVRDGDEAVMVSQFMLELQGLKAVDKEEPPRILHFNPRLKGDWSGKPVIEQNTCYRMQW GSALRCDGWKSRADEETVDGQVKCEKWIRDDDNHSEEWKATWWLNRLIGRKKKVTVDWPYPFAEGKLFVLTISAGLEGYH VSVDGRHVTSFPYRTGFTLEDATGLSINGDVDVHSIFAASLPSSHPSFAPQMHLELLPQWKAPPLLNVNVELFIGILSAG NHFAERMAVRKSWMQHKLIKSSNVVARFFVALHGRKDMNVDIKKEAEYFGDIIMVPYMDHYDLVVLKTIAICEYGIRAVA AKYIMKCDDDTFVRVDSIISEARQVQSDKSLYMGNMNYHHRPLRHGKWAVTYEEWVEEEYPTYANGPGYIVSSDIAQFIV SEFEKRRLKLFKMEDVSMGMWVEQFNMSRQVEYVHSLKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQHQVRPLCCNMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| Phobius | 42 | 638 | 597 | - | – | |
| PANTHER | 74 | 631 | 558 | 1.4E-270 | – | |
| PANTHER | 74 | 631 | 558 | 1.4E-270 | ||
| Gene3D | 140 | 266 | 127 | 3.2E-7 | – | |
| ProSiteProfiles | 149 | 359 | 211 | 29.893 | ||
| Pfam | 150 | 357 | 208 | 8.6E-49 | ||
| SUPERFAMILY | 151 | 357 | 207 | 8.89E-24 | ||
| SMART | 153 | 358 | 206 | 1.5E-26 | ||
| CDD | 153 | 357 | 205 | 4.27686E-22 | ||
| Gene3D | 277 | 360 | 84 | 1.5E-11 | – | |
| Pfam | 405 | 590 | 186 | 6.5E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi2g1v0310800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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