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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0316500 |
| Transcript ID | LotjaGi2g1v0316500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|I1JC00|I1JC00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0316500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79166169..79170464) extracted from Lotus japonicus Gifu genome v1.2.
GGACATTAAAGTCCAAATCAGAGTTTCTGAAACCCAGAAGATTAGTAAGATCACAGTGTTGTTTACTGTACTGAATGGGT GAAATAAATCTCTGTGCCTCACTGTTGTACGTCTTCACTTTCAGTCACACCACCTGACAGGCTCAATAATTAAGCCAGTT GCAATAAAATACAATGTACTAAGAAATAGAAATTTTCATTTGGCTTCTTCTGACTAGCAGTTTAATAAGCCAATTAAAAC TTATTAAGCAACATTCGTCACTCTCATTCTTATATTAAGAATTTCATCTGTTACTCATGTCATTCCTCTATATGGTAATT AAAATTTCCTCACATTTTCAATGTTGCTATCATTCCAGCTCTCCACTATGGACCACACATTTTCTTGGTCCATACTAAAC AAGGACGTATTTAGAAGGACATAACCTTCTCCTCTCAGGGAACCACTCACAAAATTAGAACCAGAGAGCTTTCAATGATG AAGCACAGAAAAATAAACCAGGAAGGAGTCCTCAGAGTCACCATGAAAGGTCTCAAGATGAGAACTGTTCTAAAAGCAGT TAGAAACCATTCCCTTTTCCTCATCAAGCAACTTCTTCCTGGTTTCATCTTTGCACTGCTTTGTTTATACTTTTATCCTC TTTCACTCACTTCATATCCAAGAACTGAGCTTCATCATTCCAGCCATATCATCACCTGTATTTCCTCCATTTCTTCTGGT TCTCCTCCTCTTCCTGAGCTTCCTTCCACAGAAACTGAGCTTTCTGTTTCTTACCAAATCACCAACCACTCCACTCTTTC GGGCTCTCCCACTGAACCTGATATTTCACTTACTCCATCAACTCCTCCAGTAATTGTGCTTCCTCATTCCAACAACAACA CCAACTACTCCTCTGTTTCTGAGTCTCCCCCTCTGTTGCTTACTTTATCTCCACCAACTGAGCTTCCTCTTCCTCTCATC ATCACCAACAACTCCTTTATTCCTGCTTCTACCCCTTCTCCTCCTCCTACTCCACCTCCATCTTATTCAGGTAAACATAT GCAAGCATAATTTTCTCTTGTTAATTAACACTATTATAATGTTAGAAGTAAGGCATGTAGACTTTTTCTGAACTTGTCAA ATTATGCAGCAGGTATTTTATTGTCAGAGAAAGACAAAGATCTCCCTCCTCCGCCTCCTCTTTATTCAGGTATATATATA TATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGCATGCATAATTTTGTCTTTAATAATA TTATGAAAAATGCTTTCTTGACACCATGGAAAGGGGATGGAGGGAAAGGGGATGGATGGATGGAGGGAAAAGGGATGGAG GGAAGTGAAAAATAGAAAGAAAAATAGAGGAAGTGTGAGATGTGGTCCAATTGGAAATTACCCAAGGTAAATTTGGGCCA CTTAAAAATTAGAGTGATTTTATCCAATGTAAATTTTGTGTGATTTAGATAATTCCTTAAAAAATAAGAGAGGGATAGAA AAAAAATCAAGTGAAAATCAAGTGGAAGAAATGGGGTGTGAATGAGCAAAGGTTGTAATATTCTATTTGGATTAGTGCAT TTTTTAATACACTGTAAAAACTCACACACAATGAACAAAAACAACTTAACTTACTTTTTGTGGCTGACTTCGTGATTTTA GCTTCTCCGTGTTTTCTGACCTTGTATGTGAACATGCACTACTTGGATATATGCACATTAGAAATTCACAGTAAAATCAA AATCATTGTAGACAACCCCAAAAGAAAAGAGGAGTTGCTTTTATCCACCGTGATTTTGACTCCCTATTTTTTTTTCATCC TATAACCAAGCTCTCACCATATAAATATATTTTTCTTAAAATCAATTATGGTCAGAAGTTTCTACCTTTTATCCTCAAAA GTACACAAATTTCCAAACATACCCTTAGAATTTTAGAATTGCAAGTTTTTTTTTTCTCAACTACAAATTATTAGCAGCTA GTAAGTTTAACCTATTGGTATATTTTGCAGTAAAGGGAAAAGTTTATGAGAAGCAATGTGACTACTTTAATGGCAAATGG GTTCGTGAGAAGAAAGGCCCTTTGTACAATGGTACCACTTGTGGTGTGATCAAAGAAAGCCATAATTGTATGGCTAATGG GAGGCCAGACTCTGAATATCTTTATTGGAAATGGAAACCAAGAAGGTGCCATCTTCCGAGGTTTAATCCAGAGGCTTTTC TCCAACTCATCAGGAACAAGCATGTATCGTTTGTTGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTATTTGCATG TTGTCCACTTTTGAAACACCTAAATTCATCTATAGAGGTATAGGCTGGTGGTATTTTCCTTCTTACAATGCAACCTTATC ATCATATTGGGCCCCATTTCTTGTGCAAGGTGTTCAAAGGCAACTAAGAGGGCCAGGACCACGTCATAACACAATGCATT TGGATCAAGTTAATGAGAATTGGGCAAAGGATGTGGGTGAAATGGACTTCATTGTGCTAGCATTTGGGAATTGGTTTGTG GAGGTTCCTTCAATTTACCATGAGGGTGATTCAGTTTTGGGTTGCCTAAACTTACATCGTCCCAATTGCACGGAAATTGG TTATTATGTGCCAATAAGGAAGGCTTTGAGGACTGCTCTTAATAGTATAATTGAGAGGAAAACAGTGAAAGGAGATGGAA TTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTTCTTGGGATAAAGGAGGTACTTGTTCAAGGCTTACA CCATATAGAGGGAAGAGGAAGCTTGGAAAGAATGATGCCGAGATTAGAAGAATTGGATTAGAAGAAATGCAAAAAGCCAA GGACAAAGCCAAATATTTTGGAAGGTATTTTAAGATTAAGGCATTAGATGTAACCAAGTTATCACTAATGAGGCCAGATG GGCATCCAGGTGCTTATGTGAGTCCAAATGCATTTTCTAAAGGGGTGACAAAGGTTGTGCATAATGATTGTACCCACTGG TGCTTGCCAGGACCTATAGACACATGGAATGAGATTTTCATGGAGATGGTGAAAAAGTGGGAGCAATAGCTGATGATTGA TGAGTGAGACAATTCCTCTTATTACATTAATCTTTCCATGTACAGGTTTTTATTTTGCTTACCTCTTCTTCCATAATGAA ATATGAGTGTATTTAATTTGGACACAAATTTTAGTTATAGATTTATTTGATCAATTTTAGTAAATAAGTTTATCACACTA GTTTGTGGTATTATTCAAGACTCAAGAGTGTCACACTGTCACTTTGAAGTAGTGTTAAAGCTTGCACTACTAAATGCTGA TTAGTGTAATGATGATTTCCGGATATTGTATTTCATTGTATCTAAATTATAATAAAAAGAATCTTCTGTTCCTATTCTGA CAAAAGGGATGGGGAATATCAAAGTCATCACTAGAGGTTCACGTTTCCTACATTCAAGCAGATCTTTGTTTGCATTCTAT CAATTTGCTATTTATATATATGGATGTGGCGTGATAATTCTTGCAATTTGCGTAGTAAACTTGTCATAACATAATGTACC ATTCCTCCTTCTCCTCGAAATGTTTATTTTCTCCTCTTCATGTATTTTGATTATAAAAAAAATGTACCATTCCTCCTGCC AAAGTTATCACCAATAAAATATACCATCAAATATGCGAAATAAGGGAATATAGGATGAATAATTAATATTTTAGTACATG GATGGACTAATAAATAGATACAGCAAGAGGCAAGATTGTAAAAATATTCCCAAAATTAGTGGTTATAATTGATAGTGATA AAAAGATTTTTTATTATAAATACACCTTCTCTCACTCATCCAAACCACTTCACTCCAAACTCTACGATGATTCCACCCAC AACCACCCTATTGTCATTCAAACAACGACCCGAAGAGTGGGGGCAGTATGGTCCCTCTTCCACATCGTCGCCATCAACGT CGTGATTCCACTCTTCCACACTATTGTCAACACAACGGTACATGAGTTCATCTGAGAGAAAGAACTGAAGAGAAGGAAGA AGTCACTTCTTATTAGAGAGGAGAGCAATAATTGTGAAGCACAAATAATCAACCTTCATCGGTTCCTACGGTGCCTGAAA ACGCAAATGCATAGAGATGAGAAGTTGTCGGTTGAAGAGCTTTGATGTAGATTGTAAATACGGTTCTCGCACAGGACAGA TGTCGAACGCGATGCTGGGACAACCGGTTCGATAACTGACTAACAGTAACAAAACC
CDS sequence (LotjaGi2g1v0316500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGCACAGAAAAATAAACCAGGAAGGAGTCCTCAGAGTCACCATGAAAGGTCTCAAGATGAGAACTGTTCTAAA AGCAGTTAGAAACCATTCCCTTTTCCTCATCAAGCAACTTCTTCCTGGTTTCATCTTTGCACTGCTTTGTTTATACTTTT ATCCTCTTTCACTCACTTCATATCCAAGAACTGAGCTTCATCATTCCAGCCATATCATCACCTGTATTTCCTCCATTTCT TCTGGTTCTCCTCCTCTTCCTGAGCTTCCTTCCACAGAAACTGAGCTTTCTGTTTCTTACCAAATCACCAACCACTCCAC TCTTTCGGGCTCTCCCACTGAACCTGATATTTCACTTACTCCATCAACTCCTCCAGTAATTGTGCTTCCTCATTCCAACA ACAACACCAACTACTCCTCTGTTTCTGAGTCTCCCCCTCTGTTGCTTACTTTATCTCCACCAACTGAGCTTCCTCTTCCT CTCATCATCACCAACAACTCCTTTATTCCTGCTTCTACCCCTTCTCCTCCTCCTACTCCACCTCCATCTTATTCAGGTAT TTTATTGTCAGAGAAAGACAAAGATCTCCCTCCTCCGCCTCCTCTTTATTCAGTAAAGGGAAAAGTTTATGAGAAGCAAT GTGACTACTTTAATGGCAAATGGGTTCGTGAGAAGAAAGGCCCTTTGTACAATGGTACCACTTGTGGTGTGATCAAAGAA AGCCATAATTGTATGGCTAATGGGAGGCCAGACTCTGAATATCTTTATTGGAAATGGAAACCAAGAAGGTGCCATCTTCC GAGGTTTAATCCAGAGGCTTTTCTCCAACTCATCAGGAACAAGCATGTATCGTTTGTTGGAGACTCTCTAGCTAGGAACC AATTAGAGTCCCTTATTTGCATGTTGTCCACTTTTGAAACACCTAAATTCATCTATAGAGGTATAGGCTGGTGGTATTTT CCTTCTTACAATGCAACCTTATCATCATATTGGGCCCCATTTCTTGTGCAAGGTGTTCAAAGGCAACTAAGAGGGCCAGG ACCACGTCATAACACAATGCATTTGGATCAAGTTAATGAGAATTGGGCAAAGGATGTGGGTGAAATGGACTTCATTGTGC TAGCATTTGGGAATTGGTTTGTGGAGGTTCCTTCAATTTACCATGAGGGTGATTCAGTTTTGGGTTGCCTAAACTTACAT CGTCCCAATTGCACGGAAATTGGTTATTATGTGCCAATAAGGAAGGCTTTGAGGACTGCTCTTAATAGTATAATTGAGAG GAAAACAGTGAAAGGAGATGGAATTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTTCTTGGGATAAAG GAGGTACTTGTTCAAGGCTTACACCATATAGAGGGAAGAGGAAGCTTGGAAAGAATGATGCCGAGATTAGAAGAATTGGA TTAGAAGAAATGCAAAAAGCCAAGGACAAAGCCAAATATTTTGGAAGGTATTTTAAGATTAAGGCATTAGATGTAACCAA GTTATCACTAATGAGGCCAGATGGGCATCCAGGTGCTTATGTGAGTCCAAATGCATTTTCTAAAGGGGTGACAAAGGTTG TGCATAATGATTGTACCCACTGGTGCTTGCCAGGACCTATAGACACATGGAATGAGATTTTCATGGAGATGGTGAAAAAG TGGGAGCAATAG
Protein sequence (LotjaGi2g1v0316500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKHRKINQEGVLRVTMKGLKMRTVLKAVRNHSLFLIKQLLPGFIFALLCLYFYPLSLTSYPRTELHHSSHIITCISSIS SGSPPLPELPSTETELSVSYQITNHSTLSGSPTEPDISLTPSTPPVIVLPHSNNNTNYSSVSESPPLLLTLSPPTELPLP LIITNNSFIPASTPSPPPTPPPSYSGILLSEKDKDLPPPPPLYSVKGKVYEKQCDYFNGKWVREKKGPLYNGTTCGVIKE SHNCMANGRPDSEYLYWKWKPRRCHLPRFNPEAFLQLIRNKHVSFVGDSLARNQLESLICMLSTFETPKFIYRGIGWWYF PSYNATLSSYWAPFLVQGVQRQLRGPGPRHNTMHLDQVNENWAKDVGEMDFIVLAFGNWFVEVPSIYHEGDSVLGCLNLH RPNCTEIGYYVPIRKALRTALNSIIERKTVKGDGIGVIVRTFAPVHFEGSWDKGGTCSRLTPYRGKRKLGKNDAEIRRIG LEEMQKAKDKAKYFGRYFKIKALDVTKLSLMRPDGHPGAYVSPNAFSKGVTKVVHNDCTHWCLPGPIDTWNEIFMEMVKK WEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 33 | 54 | 22 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 55 | 563 | 509 | - | – | |
| PANTHER | 144 | 561 | 418 | 4.6E-164 | – | |
| PANTHER | 144 | 561 | 418 | 4.6E-164 | ||
| Pfam | 212 | 265 | 54 | 4.4E-22 | ||
| Pfam | 266 | 557 | 292 | 4.1E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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