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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0321500 |
| Transcript ID | LotjaGi2g1v0321500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease binding protein) family protein; TAIR: AT1G10650.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A1J7GSL1|A0A1J7GSL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79628678..79630878) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCGGGGGCAACAATGGAAACCGCTTGCTTCCTGTTTTTCTGGATGAGAATCAATTTCAGTGTCAAACTAATGCGAC AAATCAGTTGCAGTTGTTTGGAAATTGTGAGTTTTCTCTTTCCTTTGTTCATGTGATTCTTTCATATTTGTCTGGTTCAA TGCGTTCAATGTTACTGGCTATTTTGCTCTCTTTTTTTGGATTTTCAGTCAAGTGCAATTTTAATCTTTTACTTCCAACA ACTTCATCCTCCTATTGCCCCTTTTGCCGAAGGCATGATGAAGGCATCTCTCCTTTCTTGAATAGGGTTGCAAGAGTTTA ATATAATGGGCTATAAACTTGTGTTATTTATTCCAAGTGTGCAGTTTTTGCCTTTGTGCATTGCATGTACACATCAAATT TTGCAGGACATTGTCAATTTTGATTTTTCTGCACCTACTTTCCCTGCTTCCTTTCTATTTTGATCTTGAAACATAACAAT GATAATGGACCCTGGCACGGTATTTGTATTGTTTGTATTGAGGCCTTTTTCATTACCTGTATCATGTACTGTGTCCAATC TATAAGGCTATAAACGGCTGATAATGTATATTATCTGTTGCTAGCTCTAATATTCCTATCTTCGGTTGTAAAACTAGAAG TTATTGACTTTAGTTTCACATTATCGTTTTATGCAGTTCCTTAAATTACATTTTAGATTAATTTATCTGTTCTCTATTTC TCTTTAATAATTCTTGTATTCTTGTATTTTATTTGTAGTTTTACCTTATCAGAGTGATGAACATAGAATATCTTTTGCAG TGCAAGCTGGACGCAATGTTGATCCAGTTAGTTACATTGGAAATGAGCATATCAGTTCCATGATTCAGCCAAATAAACGA AGCAGGGAAATGGAAGATATCTCGAAGAAGCAAAGGCTTCAGATATCCTTAAACTACAATGTCTGCCAAGATGATGCTGA TTGGTCGGCAAGTATTCCAAATCCTAACGCTGTGTCAACAGGATTGAGGCTTTCATATGATGATGATGAGCGAAACTCAT CTGTTACTTCTGCTAGTGGCAGCATGACTGCCCCACCTTCTATCATATTGTCCCTTGGTGACAATATCAGAACTGAGCTT GATAGGCAACAAGAAGAGTTGGACCATTATATAAAACTTCAGGTAACATATCAATATAGCTCTTTCTTTTTCTGGGAGCA AATGTTTTTTTGCTCAAAATATTTGTTTTCCTTAAAAAGGTAAGAGTGACTGGCCTGCAGCTTAATCCAATAAGAAAAGG GGAGAATACTATTCAAAAAAACTTAAGCTAGAATCTTATCAATTCAAACATATCACTATGCAGCCATTTTGGGAAGAAAT TTCACCTTTTGTTGACAAACCTTTCATTGCCTAATTCATTAGGAGTTACTTTCTAGAAGAGTTATTTCTTTTTCAACACT TTATCTCTAAAGTTTAAATCATTGAGTTTTTCAGTGTGATGGCATTGTGTTTTGTAGCCTGTAGTGGGAAGTTTTGAAAT GATTAATTTTCTATTGCGCAAAGATATATAGAACTGGAAGTTGTAGTTTGATTATGGATTTGAGATTTTGTAGATTCTTG GTTTGATTGTTTTGCACTTTTCTGAGATGTTATACCAACTCTTTCTACGCAGAAGGAACAATTGTCAAGAGGAGTAAGAG ACATGAAACAAAAACACATGGCTTCTCTCCTCACTTCCATTGAGAAAGGTATTGGTAAGAAGCTGAGGGAAAAGGAGGAG GAGATAGAGAACATGAACCGTAAAAATAGGGAGCTAGCAGAGAGAATAAAGCAGGTGGCTGTTGAAGCACAGAACTGGCA CTACAGAGCAAAGTATAATGAATCAGTTGTTAATGCATTAAGGAACAATTTGCAGCAAGCAATTTCACATGGGGTTGAAC AAGGGAAAGAAGGGTTTGGAGATAGTGAAGTTGATGATGCTGCCTCGTATATAGATCCCAATAACTTCCTAAGCATTCCA GGTGCGCCTATGAAATCTATTCACCCGAGATACCAAGGCATGGAGAATCTTTCTTGCAGAGCTTGCAAAGCAAAGGATGT TTCCATGCTGTTGATACCTTGTAGGCACCTGAGCTTGTGTAAAGACTGTGACGGATTTATCAATGTTTGTCCAGTATGTC AAATGATAAAAACTGCTAGTGTCGAGGTGTATCTGTCTTAA
CDS sequence (LotjaGi2g1v0321500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGGGGGCAACAATGGAAACCGCTTGCTTCCTGTTTTTCTGGATGAGAATCAATTTCAGTGTCAAACTAATAGTGA TGAACATAGAATATCTTTTGCAGTGCAAGCTGGACGCAATGTTGATCCAGTTAGTTACATTGGAAATGAGCATATCAGTT CCATGATTCAGCCAAATAAACGAAGCAGGGAAATGGAAGATATCTCGAAGAAGCAAAGGCTTCAGATATCCTTAAACTAC AATGTCTGCCAAGATGATGCTGATTGGTCGGCAAGTATTCCAAATCCTAACGCTGTGTCAACAGGATTGAGGCTTTCATA TGATGATGATGAGCGAAACTCATCTGTTACTTCTGCTAGTGGCAGCATGACTGCCCCACCTTCTATCATATTGTCCCTTG GTGACAATATCAGAACTGAGCTTGATAGGCAACAAGAAGAGTTGGACCATTATATAAAACTTCAGAAGGAACAATTGTCA AGAGGAGTAAGAGACATGAAACAAAAACACATGGCTTCTCTCCTCACTTCCATTGAGAAAGGTATTGGTAAGAAGCTGAG GGAAAAGGAGGAGGAGATAGAGAACATGAACCGTAAAAATAGGGAGCTAGCAGAGAGAATAAAGCAGGTGGCTGTTGAAG CACAGAACTGGCACTACAGAGCAAAGTATAATGAATCAGTTGTTAATGCATTAAGGAACAATTTGCAGCAAGCAATTTCA CATGGGGTTGAACAAGGGAAAGAAGGGTTTGGAGATAGTGAAGTTGATGATGCTGCCTCGTATATAGATCCCAATAACTT CCTAAGCATTCCAGGTGCGCCTATGAAATCTATTCACCCGAGATACCAAGGCATGGAGAATCTTTCTTGCAGAGCTTGCA AAGCAAAGGATGTTTCCATGCTGTTGATACCTTGTAGGCACCTGAGCTTGTGTAAAGACTGTGACGGATTTATCAATGTT TGTCCAGTATGTCAAATGATAAAAACTGCTAGTGTCGAGGTGTATCTGTCTTAA
Protein sequence (LotjaGi2g1v0321500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGGNNGNRLLPVFLDENQFQCQTNSDEHRISFAVQAGRNVDPVSYIGNEHISSMIQPNKRSREMEDISKKQRLQISLNY NVCQDDADWSASIPNPNAVSTGLRLSYDDDERNSSVTSASGSMTAPPSIILSLGDNIRTELDRQQEELDHYIKLQKEQLS RGVRDMKQKHMASLLTSIEKGIGKKLREKEEEIENMNRKNRELAERIKQVAVEAQNWHYRAKYNESVVNALRNNLQQAIS HGVEQGKEGFGDSEVDDAASYIDPNNFLSIPGAPMKSIHPRYQGMENLSCRACKAKDVSMLLIPCRHLSLCKDCDGFINV CPVCQMIKTASVEVYLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 4.1E-165 | – | |
| PIRSF | 1 | 337 | 337 | 3.8E-97 | – | |
| PANTHER | 1 | 337 | 337 | 4.1E-165 | ||
| Coils | 179 | 213 | 35 | - | – | |
| Gene3D | 277 | 337 | 61 | 1.0E-8 | ||
| Pfam | 287 | 325 | 39 | 7.5E-8 | – | |
| ProSiteProfiles | 290 | 325 | 36 | 8.89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0321500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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