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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0324500 |
| Transcript ID | LotjaGi2g1v0324500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT1G70590.1 F-box family protein; Swiss-Prot: sp|Q94C27|FB84_ARATH F-box protein At1g70590; TrEMBL-Plants: tr|A0A151TGY2|A0A151TGY2_CAJCA F-box protein family; Found in the gene: LotjaGi2g1v0324500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79938403..79941401) extracted from Lotus japonicus Gifu genome v1.2.
GTGACGACCAAAATATAATTAAGCCAAAAAATTAACTATAGTTCGAAAGAGACTCATGAACTAATAATGCACACGTCTTT TACTGATAGGCAGCTGTAATGCAAATGAAATGAAAAACAAATGCAAATGAAATGAAATGAAATCCCCGGTTAGCATTTCG TCCCATCTCTCTTTCCCTCCGGTTCAACTGTACCGACCCTAACCGCTCGCAGATGAAGGACCACCACCGAACTTGGCCTC GTGGCTCCTCTTCCTCTCGTTTCTCTTCCCTCCCCATCGCAAACCTAACCGTCAATTCCGTCCGCCTCCGCTCCCTCCCT CCGCCGCCGGAATCTTCCTCCTCCTCTTCCGCCGGAGGCGGCGATTTCTCCGCGCTCCCGTACGATGTGCTGGCGAAGGT CGCGGCGTCGTTCGACCAGCCGAACCTCCGGGCGGCGTCGCTAGTATGCCGCTCGTGGCGGGAGGCGCTGCAGCCGCTGA GGGAGGCGATGGTGCTCTTGATGTGGGGGAAGCGGTTCAAGCACGGCCAGCGAGGTGTCCGTCCGAACATCGACAAGGCT CTCGATTCGTTCATGAAAGCCGCTGCTCGTGGCTCTGCCTTGGCCATGGTGGATGCTGGCCTCATTCATTGGGAGAGGGG TGAGAAGCAAATGGCCCTCCATTTGTATCTCAAGGCTGCTGAGCTTGGAAACCCTTCTGCACAGTGCAATTTGGGGATTT CTTATCTTCAAGGTTTTTCCATTCTCTGCAACTCAATTTTCTGTGTTTGTGCTTCTTTCATGGTTATATGAATCTGCATA TGTATTCCATTTGAGAATCTTAATGACTATATGTTTAGTGTAGCAATGAATATTGATGATAATATATTAATATTCATTGA TGAATATTTCTGAAGTGTTCTATACAAATATGTATCCAATGAGACACTGCTACTATTTTGAATTGTCTGTGCTATGATAG TTGTATCTGTATATTATATGTATTTGTTTTGAATTTTAATGAATATATGTTTAGAGTGGCAATTAATGTTATGATGATAA TTCATGTTTGACAAAGGTATGCCTGCTGTGATTGTGCTTTGCAGTTGAACCTCCAAACACTGAACAAGCTTTAAAATGGT TATATAAAGCTTCCATTAGTGGGAATGTTCGTGCCCAGTACCAGCTTGCACTTAGTCTGCATCGCGGTAGTGGGAGCAAT AGGAATATGGATGAAGCTGTTGGTGCTCTATCCATTCCTCATCCTCTTATTTTTAATTATCAATGGAATTTTTTTCGCTA AGTTAAAACTGAGGAAATCAGTTTTGTTAGTGATGTCGCTTACAAATTATAATGTTGGGGTTTTGTGTTCTTTTATTATC ATGATATGTTATGATTTTGCTCTTAAATTTTTTTTCTCTGGATCAGGTTAAATGGTATCTAAAAGCAGCAGAAGGCGGGT ATGCGCGTGCTATGTACAATACATCTTTATGCTACTCCTTTGGTGAAGGACTGACACATAGTCATAAACTAGCAAGAAAA TGGATGAAGCGGGCTGCAGATCGTGGACATAGTAAAGCTCAATTTGAGCATGGTCTTGCTCTCTTTTCTGTATGTATTTA TCCCTTTATACCATAGCTCTGTACTTTGCACTCGTATCAGAGAATAGATGAAAAACTCAAATGTCTGTGTGAACTTTTCT CACTATTTGAAAACCTAAATCACAGCTCTGCTTTTGAAGCTGTGATCTTGCCACACTTATTTGTTTCAGAATTTGTTAAT TAGGAACTGAGGTCCTTTGCTGGAAGTTTTTTGCATGAATTACTGAACCCATCTACTATCTCAGTGTAATTATGCTGATC TCTATGTTCCAGGCCTATTTAGAGAGTTTTTAAGTGTTTTAAGATGGATATACTACTAACATAGACACACACACACGAAT TAATGTAAAATGTGATTTTGCACTGCTCATTCGGATTTGTTTGAGGTTTTAATTCAATCCGATATTCAAACATTTTTTTT TCAATGGGAGGTCCGATTTAGGTTTCATGTTCAGCTGTCTCAATTTTGGTTTTTGTTTGGTTTTTTCTGTAATCATCTTA TCTAGAATGTGTTTATACTAATGGAATAGCCGTCAGCAATTAGTTTCTGTAGGCTTATTGTAATGATAATGACAACAAGT GGACTCTAAGTTTTGGGATTTCTCTTTTGTAATGTTAGGTTTTTATGACTATCTAGTTTCTAATGGAGGTATTATATCTG TACAGGAGGGAGACTTGATGAAGGCTTTGGTATATTTGGAACTTGCTACACGCGCTGGTGAAAAGGGTGCTTCTCATGTC AAGAATGCAGTAGTTCATCGGCTTTCAGCAGCTTCACGCGATCATGCCATGCATCTAGCTGACAGTTGGCGTGCTTTGCC CTCAAGTTGATCTAAACTTTACCTTACACGTTTGTGAGCAAGAAGTTGCACTACATTGATCAGTTGAATTATAGGGGTGA AGTCAACAAAGAAAGCCTAAGGCATAAGAACAAGGAAAGCAGGAGCTGACCCGGCAAGGCGGCAACTGTATGCTTACTAA TCCTGGCCATGGTGGTGTTCCTGTGTGTAATGTCTAACTTTTTTAGTTCATGCTCTGTTCCACTAATGCAAAGCATAGTG TGTACCTAGATATTTTGCTTTTAATAGAAAAAGCTAGATAAATCCTTTATAAACAGTCCTACTGAAAAGTTCCTCATGAT TGGCCTTTAGGACTGTACATGCCTGCATGGTGATTGTAGAATATAATGGTAGTCCTGTTTCATAAATGGCCATCTTGATC TGGAAGAATGCGACCAAAAGAAAAATAAAATATATCTGGAAGATTGCAACCTTATAGCCTATGCCTATGGGTAAGAAAAT GTAGTAGATTTGAATATCGTTTGGTAGATAAGATACAGGAAAGAAATATGACGACTGTTTGGTTGCATAGAGAAGTGGAA TTAAAGAAAATGATAAATGTATGTTTAGAGAAAAAGCGC
CDS sequence (LotjaGi2g1v0324500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGACCACCACCGAACTTGGCCTCGTGGCTCCTCTTCCTCTCGTTTCTCTTCCCTCCCCATCGCAAACCTAACCGT CAATTCCGTCCGCCTCCGCTCCCTCCCTCCGCCGCCGGAATCTTCCTCCTCCTCTTCCGCCGGAGGCGGCGATTTCTCCG CGCTCCCGTACGATGTGCTGGCGAAGGTCGCGGCGTCGTTCGACCAGCCGAACCTCCGGGCGGCGTCGCTAGTATGCCGC TCGTGGCGGGAGGCGCTGCAGCCGCTGAGGGAGGCGATGGTGCTCTTGATGTGGGGGAAGCGGTTCAAGCACGGCCAGCG AGGTGTCCGTCCGAACATCGACAAGGCTCTCGATTCGTTCATGAAAGCCGCTGCTCGTGGCTCTGCCTTGGCCATGGTGG ATGCTGGCCTCATTCATTGGGAGAGGGGTGAGAAGCAAATGGCCCTCCATTTGTATCTCAAGGCTGCTGAGCTTGGAAAC CCTTCTGCACAGTGCAATTTGGGGATTTCTTATCTTCAAGTTGAACCTCCAAACACTGAACAAGCTTTAAAATGGTTATA TAAAGCTTCCATTAGTGGGAATGTTCGTGCCCAGTACCAGCTTGCACTTAGTCTGCATCGCGGTAGTGGGAGCAATAGGA ATATGGATGAAGCTGTTAAATGGTATCTAAAAGCAGCAGAAGGCGGGTATGCGCGTGCTATGTACAATACATCTTTATGC TACTCCTTTGGTGAAGGACTGACACATAGTCATAAACTAGCAAGAAAATGGATGAAGCGGGCTGCAGATCGTGGACATAG TAAAGCTCAATTTGAGCATGGTCTTGCTCTCTTTTCTGAGGGAGACTTGATGAAGGCTTTGGTATATTTGGAACTTGCTA CACGCGCTGGTGAAAAGGGTGCTTCTCATGTCAAGAATGCAGTAGTTCATCGGCTTTCAGCAGCTTCACGCGATCATGCC ATGCATCTAGCTGACAGTTGGCGTGCTTTGCCCTCAAGTTGA
Protein sequence (LotjaGi2g1v0324500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDHHRTWPRGSSSSRFSSLPIANLTVNSVRLRSLPPPPESSSSSSAGGGDFSALPYDVLAKVAASFDQPNLRAASLVCR SWREALQPLREAMVLLMWGKRFKHGQRGVRPNIDKALDSFMKAAARGSALAMVDAGLIHWERGEKQMALHLYLKAAELGN PSAQCNLGISYLQVEPPNTEQALKWLYKASISGNVRAQYQLALSLHRGSGSNRNMDEAVKWYLKAAEGGYARAMYNTSLC YSFGEGLTHSHKLARKWMKRAADRGHSKAQFEHGLALFSEGDLMKALVYLELATRAGEKGASHVKNAVVHRLSAASRDHA MHLADSWRALPSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 333 | 329 | 4.5E-151 | – | |
| PANTHER | 5 | 333 | 329 | 4.5E-151 | – | |
| SUPERFAMILY | 42 | 87 | 46 | 3.66E-7 | ||
| ProSiteProfiles | 49 | 101 | 53 | 8.729 | ||
| Gene3D | 51 | 85 | 35 | 3.6E-7 | – | |
| Pfam | 52 | 86 | 35 | 1.2E-4 | ||
| Gene3D | 86 | 172 | 87 | 1.8E-11 | ||
| SMART | 92 | 128 | 37 | 2.1 | ||
| Pfam | 103 | 127 | 25 | 170.0 | ||
| SUPERFAMILY | 112 | 301 | 190 | 9.81E-40 | – | |
| SMART | 129 | 160 | 32 | 2.6 | ||
| Pfam | 141 | 160 | 20 | 0.43 | ||
| SMART | 161 | 194 | 34 | 0.018 | ||
| Pfam | 161 | 192 | 32 | 0.0046 | ||
| Gene3D | 173 | 330 | 158 | 3.3E-34 | ||
| SMART | 195 | 230 | 36 | 1.5E-6 | ||
| Pfam | 196 | 230 | 35 | 3.2E-6 | ||
| Pfam | 231 | 266 | 36 | 1.6E-6 | ||
| SMART | 231 | 266 | 36 | 5.1E-5 | ||
| SMART | 267 | 298 | 32 | 240.0 | ||
| Pfam | 273 | 297 | 25 | 190.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0324500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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