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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0333600 |
| Transcript ID | LotjaGi2g1v0333600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin; TAIR: AT5G46700.1 Tetraspanin family protein; Swiss-Prot: sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2; TrEMBL-Plants: tr|A0A151TH91|A0A151TH91_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0333600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80975075..80977024) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAACCTTTCGAAAAATGTATTCATCTCCATCATTGAATCCAAAACTCACACCTTTCCATGCACTGTCTGAGCTAAGC TCTACTCCATTTCACTGTCATACAAAACAACAAACACCTCTAAACTAACCAGGCCCTCTCAGTTTCTCCCACAAGATGGC AATGAGCAACAATGTCATCGGAGCAGTCAACTTCGTCGCCGTGCTCCTCTCAATCCCCATCATCGGCGCCGGAATCTGGC TAATGAATGGCGCAGCTGATTCCTGTGTATCCTTCCTACAATGGCCCGTCATCATTCTTGGTGTTCTTATCCTCGTCGTG GCTCTCGCAGGTTGCATTGGAGCCTTCTTCAGAATCTCATGGCTTCTCATAATCTACCTCATTGCCATGCTCATCCTCGT TATACTTGTCATTTGCTTGGCTGTTTTCGTTTACATGGTCACCATTCGTGGTCATGGCCTCATGGAACCCAACCGCGCTT ACTTGGAGTACCGTTTGGATGACTTCTCAGGGTTTCTTCGTCGCAGGGTGAGAAGCTCGTTCAAGTGGGATCACATCAGA AGCTGTCTTAGTCAAACGAACATGTGCGCTGAGCTTAACCAGAGTTTCCGAATGGCTCAGGATTTCTTTAACGCGCGTCT AACGCCTATGCAGGTAAAGTTTCACTGACCAGTCCGCCCTAGTTGAGACGAGATGTTTCTTAACTAAATCATGCTTATGA AACACTTGGGCTATCTGAGATGTGGCTCTTAGCTACCCAGAATAAGATGCTAAATGAGTAGTGTCTTTTTTTTATTTCAA AATTAATTAATTTTAGATGAAACTTCTGTTACTATGTTTGATGTTTAGTAAAAATAACCATGCTACAAGATTTGTTAGTG GTCCAAACTGTCTTCTTTCACTAACATTTGCTAATTAACTTTTCCCATTGATTCCCTATTACAGTCAGGGTGCTGCAAGC CACCGACGCAATGTGCGTACACATTTGTGAACCCAACTTATTGGATAAGCCCGATTAACACAGCAGCAGATATGGATTGC CTGCAGTGGAGCAACGACCAAACACAACTTTGCTACGGCTGTGACTCCTGCAAGGCTGGTTTGTTGGCAAATCTCAGGAA GGAGTGGAAAAGAGCCAATGTCGTATTGATCATCACCCTTGTCGTTTTGATAGTGGTTTATATGGTAGGATGCTGTGCCT TTAGAAATGCCAAAACTGAGGATCTCTTTCGCAAATACAAGCAGGGCTATACTTGAGAAGATTGGATCAGTGTTTGATGT TAGTGAAGTTTGGTACAGTGAAGTGGCAATGAAATTGGATAATTTAGTTTGTATTAATATTTATTACTAGTACTATCTAT GTTGTTGGAATTAAAAAAAAATAATATCCATGTAGTATAAGAATTTGTCGTTTTCAGTTTTCACTTTCTTTAAGAAGAAA ACATGCTTGTTTATTATGGCCGGGTAGAGTTGAAAGGTGAAAACATGATACCAAACGGTACAAGGGTTCAGCATGATTTG CGGTGAGCACCGAAAGCTGATGTCTCGACTCCCGAGTTGGGAATACGACTAGGAAGGTGGAAAGCACAAGGATGCTTTAA TGGAGGATTTTCAGGGTTCTTGACTTCTTGTTTTGGCCTCTGCCTTGTCTAAACCTAAAAGGCTAAAAGGCATTTGACAG CGGGAAAAGGAGGCATTGAGAGGGAGGGAGGAATGCAAATTTAAGCTAAATCAACCAGTTTGAACTAATTACCATTATCA AATATTTTATGTTTGCATTAAATCCTAGTTTAAATTAATTAATCTAAACCAATCACTATTGATTTACATTTTGTTGTTGT TTGTCAGCATTTATATTCTAACTAGCTAGACCACTTGATCGAAAATTTTGGTTTTTGTACTTGTATCTCAATATTTTTTT AGAAAACGGTTTGTTGTTAATTATTAGTAA
CDS sequence (LotjaGi2g1v0333600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGAGCAACAATGTCATCGGAGCAGTCAACTTCGTCGCCGTGCTCCTCTCAATCCCCATCATCGGCGCCGGAAT CTGGCTAATGAATGGCGCAGCTGATTCCTGTGTATCCTTCCTACAATGGCCCGTCATCATTCTTGGTGTTCTTATCCTCG TCGTGGCTCTCGCAGGTTGCATTGGAGCCTTCTTCAGAATCTCATGGCTTCTCATAATCTACCTCATTGCCATGCTCATC CTCGTTATACTTGTCATTTGCTTGGCTGTTTTCGTTTACATGGTCACCATTCGTGGTCATGGCCTCATGGAACCCAACCG CGCTTACTTGGAGTACCGTTTGGATGACTTCTCAGGGTTTCTTCGTCGCAGGGTGAGAAGCTCGTTCAAGTGGGATCACA TCAGAAGCTGTCTTAGTCAAACGAACATGTGCGCTGAGCTTAACCAGAGTTTCCGAATGGCTCAGGATTTCTTTAACGCG CGTCTAACGCCTATGCAGTCAGGGTGCTGCAAGCCACCGACGCAATGTGCGTACACATTTGTGAACCCAACTTATTGGAT AAGCCCGATTAACACAGCAGCAGATATGGATTGCCTGCAGTGGAGCAACGACCAAACACAACTTTGCTACGGCTGTGACT CCTGCAAGGCTGGTTTGTTGGCAAATCTCAGGAAGGAGTGGAAAAGAGCCAATGTCGTATTGATCATCACCCTTGTCGTT TTGATAGTGGTTTATATGGTAGGATGCTGTGCCTTTAGAAATGCCAAAACTGAGGATCTCTTTCGCAAATACAAGCAGGG CTATACTTGA
Protein sequence (LotjaGi2g1v0333600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMSNNVIGAVNFVAVLLSIPIIGAGIWLMNGAADSCVSFLQWPVIILGVLILVVALAGCIGAFFRISWLLIIYLIAMLI LVILVICLAVFVYMVTIRGHGLMEPNRAYLEYRLDDFSGFLRRRVRSSFKWDHIRSCLSQTNMCAELNQSFRMAQDFFNA RLTPMQSGCCKPPTQCAYTFVNPTYWISPINTAADMDCLQWSNDQTQLCYGCDSCKAGLLANLRKEWKRANVVLIITLVV LIVVYMVGCCAFRNAKTEDLFRKYKQGYT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 269 | 269 | 2.5E-171 | – | |
| PANTHER | 1 | 269 | 269 | 2.5E-171 | – | |
| PRINTS | 6 | 29 | 24 | 9.6E-10 | ||
| Phobius | 6 | 29 | 24 | - | – | |
| Pfam | 7 | 251 | 245 | 4.3E-27 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 30 | 40 | 11 | - | – | |
| PRINTS | 38 | 64 | 27 | 9.6E-10 | ||
| Phobius | 41 | 65 | 25 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| ProSitePatterns | 49 | 71 | 23 | - | ||
| PRINTS | 65 | 93 | 29 | 9.6E-10 | ||
| Phobius | 66 | 70 | 5 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 71 | 95 | 25 | - | – | |
| Phobius | 96 | 231 | 136 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 232 | 255 | 24 | - | – | |
| Phobius | 256 | 269 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0333600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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