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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0334300 |
| Transcript ID | LotjaGi2g1v0334300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I assembly protein Ycf3; TAIR: AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q17A75|FICD_AEDAE Adenosine monophosphate-protein transferase FICD homolog; TrEMBL-Plants: tr|A0A1J7I785|A0A1J7I785_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0334300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81039010..81040547) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTAGGTCAACCCTTTCAGCGCAAGCAACGGTGCAGATTCAACGCTGAAATGCAATCGCGCACCCAGCATCACACCCT ATATAAACACATCCTTTGAACTCTTTCAAAGCAGTGTAAACTTAACCAGTCCAAAGTCCAAACCCATAAAATCTAAGCTA TGGGAACTTCTCTCATCCGAACCGGTTCGTTCCCGGTCCAGAAACCTCTCCTTCCGGGTTCAACCCGGTTCTCTCTCTCG CGCCAAGCCTCTCTCGCCGGCGATAAGAACCACCCTCTATCGCCGAGGCTTTCACTGCATTTCTGCTCCAACGGCCGCCG CGACACGCCAGCGAGCGGGATCCAAAGAGCGTTCTCCGAAGGCTCGTTGATTCGTTCCGGTAGTGACAATTTCGGCCTTC GCCGGAATCTGAATCGGTCTCTCCCGGCGATCATACTAGACGAAGAAGAATTCCTCACCGACGAGGACAGCACCGCTTAC CGCCGGCCGGAGAGCAGAATTCCGGTGGTGGATCTCGGATCAGGTTGTGGATCCGGCTACGGAGGCGATTACAGAAACGA TGCCGTCACCGGCGGGAACGGCGGTGAAAGGATTAAAATAGGCGCGTATTATGAGGAAATGTTGAAGTCAAACCCTACCG ACGCGCTTTTGCTGAGAAACTACGGCAAATTTCTTCACGAGGTGAGTTGAATTGTTACGGAATCTTCCATTGCATGTTAA TTTCGAGAGAATTTAAATAAAATTAGTAGTAATTGATTTAAATTTTGACGATTGCAGGTGGAGAATGATATGGTGAAAGC AGAGGAATATTACGGAAGAGCGATTCTAGCGAATCCTAGCGATGGCGAACTTCTTTCGTTGTATGGGAAATTGATCTGGG AAATGGAGAGAGATCAAGAGAGAGCCCAATGTTACTTTGATCAGGCAATTCATGTTGCTCCTGATGATTGGTAATTTCTA GTCCTCGGCTTAAGCTTTTGCGATAATTGATTGTTTGATATGTTATCAGAGTCTCGACCAACTTAAGCTTTTGAAATAAT TGATTGTTTGATAGCGATTAACAATAGTTTTTGTTTGTTTTGTTCAGCACGGTGCTGGGATCCAATGCACACTTCATGTG GGAATCGGAGGAGGAGGTGGTTAACGGCGGAGGAATGAAGGGGAAAGCGGAGGAATCGGCGGCAGAGCTGATCGCTGCTT GTTAATAGGAATTTTGATTAACGGGCGTGAGAATGCCACTTGTATGTTATATTTCTAACTGACATTGAATGTGAAGGTTA ACAATAATGGAGTCGTTTTGTTTGATGTGTCTAACTAGAAGCTCCAAGAAACTCCGCATCCAAGAATAGAGACTGAAAGC GAAATCTGTGTCAATTGTAATTATTCTTTTCTACTTGTTCCTTCTGCTGGCTTGTACCTTGTAACTTAACATGTATCATA TTAATTAAAGCTAAAGAGTTATGAACAATTTTTGCATGAATCTATTGTGTGATCTGCACATATAATCAATTAAAACAATA AAATCATATCATAATTTA
CDS sequence (LotjaGi2g1v0334300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTTCTCTCATCCGAACCGGTTCGTTCCCGGTCCAGAAACCTCTCCTTCCGGGTTCAACCCGGTTCTCTCTCTC GCGCCAAGCCTCTCTCGCCGGCGATAAGAACCACCCTCTATCGCCGAGGCTTTCACTGCATTTCTGCTCCAACGGCCGCC GCGACACGCCAGCGAGCGGGATCCAAAGAGCGTTCTCCGAAGGCTCGTTGATTCGTTCCGGTAGTGACAATTTCGGCCTT CGCCGGAATCTGAATCGGTCTCTCCCGGCGATCATACTAGACGAAGAAGAATTCCTCACCGACGAGGACAGCACCGCTTA CCGCCGGCCGGAGAGCAGAATTCCGGTGGTGGATCTCGGATCAGGTTGTGGATCCGGCTACGGAGGCGATTACAGAAACG ATGCCGTCACCGGCGGGAACGGCGGTGAAAGGATTAAAATAGGCGCGTATTATGAGGAAATGTTGAAGTCAAACCCTACC GACGCGCTTTTGCTGAGAAACTACGGCAAATTTCTTCACGAGGTGGAGAATGATATGGTGAAAGCAGAGGAATATTACGG AAGAGCGATTCTAGCGAATCCTAGCGATGGCGAACTTCTTTCGTTGTATGGGAAATTGATCTGGGAAATGGAGAGAGATC AAGAGAGAGCCCAATGTTACTTTGATCAGGCAATTCATGTTGCTCCTGATGATTGCACGGTGCTGGGATCCAATGCACAC TTCATGTGGGAATCGGAGGAGGAGGTGGTTAACGGCGGAGGAATGAAGGGGAAAGCGGAGGAATCGGCGGCAGAGCTGAT CGCTGCTTGTTAA
Protein sequence (LotjaGi2g1v0334300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTSLIRTGSFPVQKPLLPGSTRFSLSRQASLAGDKNHPLSPRLSLHFCSNGRRDTPASGIQRAFSEGSLIRSGSDNFGL RRNLNRSLPAIILDEEEFLTDEDSTAYRRPESRIPVVDLGSGCGSGYGGDYRNDAVTGGNGGERIKIGAYYEEMLKSNPT DALLLRNYGKFLHEVENDMVKAEEYYGRAILANPSDGELLSLYGKLIWEMERDQERAQCYFDQAIHVAPDDCTVLGSNAH FMWESEEEVVNGGGMKGKAEESAAELIAAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 251 | 251 | 4.0E-69 | – | |
| PANTHER | 1 | 251 | 251 | 4.0E-69 | – | |
| Gene3D | 143 | 244 | 102 | 1.9E-11 | ||
| SUPERFAMILY | 149 | 242 | 94 | 5.77E-11 | ||
| ProSiteProfiles | 150 | 231 | 82 | 12.966 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0334300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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