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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0334700 |
| Transcript ID | LotjaGi2g1v0334700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G17785.1 myb domain protein 39; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|I1L4Y6|I1L4Y6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0334700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81061756..81063820) extracted from Lotus japonicus Gifu genome v1.2.
CACCTATAAAACCACATATATCAAGAGCTACATATGCTAAGTTCCTAACATAGCTTTTCTTTTGGAGCAGACAATTCTGT TAAATATCTGTTATCTATTATTCTTTCTGTTGGAAGTTCTGCATTATGGGGAGGTCACCGTGTTGTGATAACGAGAGTGG TGTGAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTGGTTGATCATATCAACAAGCATGGCCATGGCAACTGGG GAACACTTCCAAAGCGTGCCGGTTTGAATAGGTGCGGCAAGAGCTGCAGGCTAAGGTGGACTAACTATCTCAGGCCAGAT ATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGAATCATCATCAACCTTCATTCAGTTCTTGGAAACAAGTATATATA TCTTCCCTACTTTTAATGCATGTTTTAGTTGGTAAAGACATACAGATTTTGCGGACATACACCAGTCCTACGCATTAGCA CGGGTTTTTAACCACCAAAACATTTGTGGTTGTTAAACACTGACGCTAATGCGTATGTATGTCTGCAAAATTTTGTATGC CCAACAATCATTTTTAAATAATTGATTCTGAATGCAAAATCAATTCTTGAAAGAAACTTCAGTGAGAAGATACTGAATGT CAAATTTGGTTGAGGCAAAACAAATTGATACTAGTTGACATGAATTAATGTTGTGCAGCTTAATTAATTGATATAAGTAA TATGTGCTAATTACTTTTATGTTTGTGTTAGGTGGTCGAAGATTGCAGCCCATCTTCCAGGAAGAACTGATAATGAGATC AAGAATTTCTGGAACACTCACATAAGGAAGAAGCTTCTGAAGATGGGAATTGACCCTGAAACTCACAAGCCAAGGACTGA TTTCAATCACCTCATGACTCTTTCACAGTTGCTTGGCATGTCAACAAACATGGGAAATGCTAATTGGGGCAACAATAACC CTCTTGGTGATATCACTCAGCTAGCCAAGTTGCAACTTTTGCAAAATCTTATGCAAATTATGGGTAGCAACAATTCACTT GTGAACATGGGGAACCCTCATAACCTCTCAGGAATTCCCAGCCTCAACCCATTCAATGTGTTTACAAATACCCTTCAAGC TAAGGAGCCATTGGTTTTGAGTGGTGAAGAATATGGAAACAATGGTTTCTGCTCTCAAGCACAAAGTGGGTCCCCCTCTC AGCAGGATATTTCAAAATCAAGGGCAGATTTTGTTGATCAGGGTTCATATAATCCACAAGTTCTTGATCATAACAAGAAA ATTAGCAGCACTACTTCATGTGAAAAACAAGAAGAAAAATCATCACTTCCTGCATTAGTTGAGGGAACCTTCAACCAAAT AGACAATTGCTATAACACAGCTCAAACATCCACAGAGTCACCTTCTAATACAAACCTTGATGATTGGGAGAATTTCCTCA TTGACAATGAAACTAGTGGTTCCTACTGGAAAGAGCTTCTAGAGTAAGCCCTAATTTTCATATGATTTGCTTTGCTCAAT TGCTCTAGCTTCTAGTTGCATAAATTGCAGCTTCACCAAAACTCATAATTTTCAATCACCTTATTTTTTTCTCAGAATCA ATTCTGTCAGCTAGAAGCTATTTTTAGAAACTTATATTGATTGTTGCTTCAAAATCAATTATAGAAAGATATTCAAACTT GTTAATGCCTTTTTCCTTCCTTCATTTACTCAGATATTTCCTTTTCATTTTGCAGCTTGACATCCACTTCTGCGTCGCCA ATTTCTTGGTAGAAGAATCACTGATTCTCTTTCTGCATAATCTCATCAAGAAAGACCTATTGCTTCATTCATTCATGGCT TCTATTATTGTTTAGATTATTTCAAATGTTATACATAGGAGATTATAATAACTGTACTTTCTGTACAAAACAACAAGATA CACTAGCATATTGAATATGGAGAGTATAAATTACTAATGTATGATTCTTATGTTCTTCAGACAAACTTTACTGGGTTGGT TCTATTGGTAGCTTTGTTAGAATTAAAGAAACATATAATTGTATTGCAATGCAAAATTATAGCTA
CDS sequence (LotjaGi2g1v0334700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGTCACCGTGTTGTGATAACGAGAGTGGTGTGAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTGGT TGATCATATCAACAAGCATGGCCATGGCAACTGGGGAACACTTCCAAAGCGTGCCGGTTTGAATAGGTGCGGCAAGAGCT GCAGGCTAAGGTGGACTAACTATCTCAGGCCAGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGAATCATCATC AACCTTCATTCAGTTCTTGGAAACAAGTGGTCGAAGATTGCAGCCCATCTTCCAGGAAGAACTGATAATGAGATCAAGAA TTTCTGGAACACTCACATAAGGAAGAAGCTTCTGAAGATGGGAATTGACCCTGAAACTCACAAGCCAAGGACTGATTTCA ATCACCTCATGACTCTTTCACAGTTGCTTGGCATGTCAACAAACATGGGAAATGCTAATTGGGGCAACAATAACCCTCTT GGTGATATCACTCAGCTAGCCAAGTTGCAACTTTTGCAAAATCTTATGCAAATTATGGGTAGCAACAATTCACTTGTGAA CATGGGGAACCCTCATAACCTCTCAGGAATTCCCAGCCTCAACCCATTCAATGTGTTTACAAATACCCTTCAAGCTAAGG AGCCATTGGTTTTGAGTGGTGAAGAATATGGAAACAATGGTTTCTGCTCTCAAGCACAAAGTGGGTCCCCCTCTCAGCAG GATATTTCAAAATCAAGGGCAGATTTTGTTGATCAGGGTTCATATAATCCACAAGTTCTTGATCATAACAAGAAAATTAG CAGCACTACTTCATGTGAAAAACAAGAAGAAAAATCATCACTTCCTGCATTAGTTGAGGGAACCTTCAACCAAATAGACA ATTGCTATAACACAGCTCAAACATCCACAGAGTCACCTTCTAATACAAACCTTGATGATTGGGAGAATTTCCTCATTGAC AATGAAACTAGTGGTTCCTACTGGAAAGAGCTTCTAGACTTGACATCCACTTCTGCGTCGCCAATTTCTTGGTAG
Protein sequence (LotjaGi2g1v0334700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCDNESGVKKGPWTPEEDEKLVDHINKHGHGNWGTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERIII NLHSVLGNKWSKIAAHLPGRTDNEIKNFWNTHIRKKLLKMGIDPETHKPRTDFNHLMTLSQLLGMSTNMGNANWGNNNPL GDITQLAKLQLLQNLMQIMGSNNSLVNMGNPHNLSGIPSLNPFNVFTNTLQAKEPLVLSGEEYGNNGFCSQAQSGSPSQQ DISKSRADFVDQGSYNPQVLDHNKKISSTTSCEKQEEKSSLPALVEGTFNQIDNCYNTAQTSTESPSNTNLDDWENFLID NETSGSYWKELLDLTSTSASPISW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 343 | 342 | 2.0E-99 | – | |
| PANTHER | 2 | 343 | 342 | 2.0E-99 | ||
| ProSiteProfiles | 10 | 62 | 53 | 17.496 | ||
| SUPERFAMILY | 12 | 109 | 98 | 9.35E-33 | ||
| Gene3D | 13 | 68 | 56 | 1.4E-20 | – | |
| SMART | 14 | 64 | 51 | 2.0E-16 | ||
| Pfam | 15 | 62 | 48 | 2.2E-16 | ||
| CDD | 17 | 62 | 46 | 2.83774E-13 | ||
| ProSiteProfiles | 63 | 117 | 55 | 28.615 | ||
| SMART | 67 | 115 | 49 | 2.5E-17 | ||
| Pfam | 68 | 112 | 45 | 1.9E-15 | ||
| Gene3D | 69 | 136 | 68 | 2.9E-21 | – | |
| CDD | 70 | 113 | 44 | 2.10731E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0334700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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