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LotjaGi2g1v0335200.2

Overview

Field Value
Gene ID LotjaGi2g1v0335200
Transcript ID LotjaGi2g1v0335200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Heat shock transcription factor family protein; TAIR: AT1G32330.1 heat shock transcription factor A1D; Swiss-Prot: sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d; TrEMBL-Plants: tr|G7KDN6|G7KDN6_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi2g1v0335200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81120653..81124799) extracted from Lotus japonicus Gifu genome v1.2.

TCTCTTCTCTTCTCTTCTCTTCCAATGCCCATCCCTCTTTCCCTCTTCAAAATCCAAATCGATTATCAAAATTCGAAATC CTACAATTAGGGTTTACGTTTTTCGCACAGTGATTCCTGATTAATTCCTCTTCGTTTTTGCTTAAACTTCAATTTACCGA CATGGACGGAGATGGAGGCGGCGGTTCAGCCCCGTTGCCGGTGCCGACGCCGATGTCAAACTCGACTGCGCCGCCACCGT TTCTGAGCAAGACGTATGACATGGTGGATGACCCTGCAACGAACTCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTC GTGGTTTGGGATCCACCGGAATTTGCAAGGGACCTCTTGCCTAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCAG GCAGTTGAATACATATGTGTGTTTTCTTCTTCTTCTTCTTTTGCTTTGCATTTTCTTCATTGATGTTGTGTGCTGATTTG ATTACTCAAGACTTTGCATTTTTCATTTGATTGGTAGTGTTACACTGTGTTGTTGATGTGCAGTAATAATCCTTTGAAAC TGCTTAATCTTTGTCTTAGAATTTGTGTTTAAGTTTGATTCATGATTAGTCTTGATTATGCTGTGGATGTGGGTTTGAAT CTCTTTCTGCAACTGGGTTGCTTGCAAGATTTGATGTTTTTGACTACTTGTTTTGTTGTGATATACAGAGGAGTGGAGTG AGTGGGAAGGTTTTTTGTTTTTTGGCTTTGGGGTTTTGTGTTTCTAGTGTCCTGGACCAAAGAAGTAGGAAATTTTGCTT GAGGTTTCAATTAAACTGAAAGAGCAAGGGTGGGATTTGTTGTTTTGTTTTATTGTAGCAAAAGAATGGATAACATATGA AATTTAAATTTGATATTTGTCCCTCCTGCATTGTGTCAGCAACTAGATGGAGCAGAAGAGGGAAAATTGACCAAGAAAGC AGTGCTCAGGTTCATTGGTTACTTGATTATGGTTTATTGATGCATTATATATCAAATGACAAATGTGTGTGTTATATAAA GTATAAACCTAACTGAAGTAAGGCAGATTTCAAATTGGTGTGAAGAGGATTTGGGGGTCTAGGAAAGGATATTTGCTCTG AATCTGTCATGACATTATACACCTGGTCACTGTTATTTTATACATAATCATAATGTGTTGATGTCTTGTGCTTAGAAGTC AGAAACTTAATTCAATATATGAATGATGCTGAAACTTTTAAAGTAGTACTGCTATCAATGCAATGAATATTATGTACATT TTCAAGTGACATAAGGATTAGAGCTTGTAAACAATGATATTGCTTGATAATTGACTTCATTTAGGATGTATAAACTTTGC AACTATGTTGAGTAATTGATCTGTTGCCTTAGTTGCATGGGTTGCATGTTCTATGTAGTATAGGGCTGCTGTGTTCCACC TCTTAAGCTAGTATTCATCTTATAATTAGAGGATAATCGGAATCTTCACATAGCCTCTTGCTGAATTAACATCAGTTAAT TATATCAAAACACTAAGACATAAACTCTGCAATAAATTTTGTTCTCTTCCTTGTGAACCAAAGCTAGCTACATGTCAGCA TGATTCTTCTTCTGATTTGCTTTACCCTCATGGGGTTGGAATGCACTTTTTTTTTTTTTTCCGTTTACATCCATTTTGGC AGATCAGTTTAACATAAGTATTTTAGTTTTTGTTTGTGGCTAATAAACTTTGTCTTGGATTCAACTTCTGGCAAAATACT TGAAAAGCTTAGCTTATTGATATATGATTATATGAACCTTAATTTAAGTTAACAATAAATAGTATGTTATGCAACTGAAC TGAGTTTGTCCTGAGGCCCATTTTGTGGACATGGGCTTTTTAGGTTCACATGTCTACCTGGGTAAATAATCAGTACTTAC TTTGATTGTAAAGCTGGTGTATATCCTTTGGCTGTTTTGTAAAACACCTGCATCTTAGATTTTCTCCTCTCATTAAACTT GGCTTGGAAATTGCGTGTGTAATATTACAGCGTTCAGTGCAAGGTTGGTTCCAGTTGCTCTTTTGGAGCACATGCAAATG ACCATTATTGGAGTTTTCTTAATGCTCTTTATAACAACTCAAATGCTGTGTGCTTGCTTTTGTAATATCTATTTTATGGT TTATGTTTTCTTTTCTAATATCATCAACAATCATCATCAAGCAGGGTTTCAGGAAGGTTGATCCTGATCGATGGGAATTT GCAAATGAAGGCTTTTTGAGGGGTCAAAAGCACTTGCTCAGGAGTATAACTCGACGTAAACCTGCCCATGGCCAGACTCA ACAGGCTCAACAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGG TTGAGAGGCTTAAAAGAGACAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAGC CAGCTGCAAACAATGGTTCAACGCCTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTGGCCAAAGCTGT CCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAGCAAAATGAGAGCAATAGGCGCATATCTGAAGTCAGCAAAAAGCGCC GGCTCAAGCCGGACGGCAATGCTGAAACAGAGCGTGCTGCTGCACCTGATGGACAAATTGTTAAATATCAACCTCTGATT AATGAAGCTGCAAAAGCAATGCTAAAGCAGATTATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAGAACCCCAA CAATTACTTGATTGGTGATGACTCATCATCCGGTGCAATGGACAGTAGCAGCTCTTCAAGCTGGACTTCTGGAGCAACTC TTCAAGAGGTTCCTCCAGCTTCAGTGCAGCCTTCTCACATTCCAGATTCTACAGGGACTCAAGCACATATTCCCTCCGCT GAGAAACCTGTAATTGTATCTGTACCACAAGCTGCTGTTTCCGAAAAAGTTATAAAGAACAGAGCACATGAGGCGCCTAC AATGCCTGTTTCTCAAGCAGATGTGATCATGCCTGATATATCGTCAATACCAACAGAGATAGTGCCAGGAAGTATTCTTG ATATTCCTGAAGAAAATTACACGGCTCCTGAGAAAGATGAGGGATATATGGATCCTACTTCACTGGGAGTTGATGAATTT CCCTTTGATTTTGAAGGTATTTCACCTGATGGAGACATTGATGACTTATTAGGCAATTCTTCTCTTTGGGATGATCTTTT GCGATCGCCAATTCCAGAGGGTATCGAGACGGATGTTGCTGAAGTATCCCAAGGGAATAAGATGCAGCCAACCGAAAATG GATGGGACAAAAAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAGAAAGAGTTTGATAGGCT ATGAAATTTTTATTAATGTTTCATATTACCCAAGGTAATTTAATCCCTGACCCAATCAATACACAAGTGATGTCTATAAT ATAGTTACCCTCACTTGCTCACTGATAAAGCGGAAGCTTCTCATTTGGTCTTTCTTGGGCATAGTTTGTGCATTCGAGAC GTAAATCTACTTTTCTTTTTTGTGCAATTGCATTGACATTTGCTTGGACTTCATGTTGAGAACAAGTTATGAACTTAGGG CCTTGTCATGACATCCTTGTGAAGTGTTTGTCGTTTCCCTGATCAGTGCTTCCAATGTTATAGGAAATCTGTGAAAGTTG ATACATGTGAATATGATCTTGCACTTTCCCCCTCGATCTTCATGTTTCCTTGGTGAGGGGGAAATAGGAAAAAGAGAAGA CTTGTGTATGATTGCTCAAGGTGTCTGAGAAATGCACGTTGGTTCTTGTTTGGAAGATTTACTTCATGAACAAGGATGGA GGCAATGTGATTACAATGTTAAGCTGCAGGGTGTTTTGTTCCTCTTATGTTTCAATTGATGGAAAAATATGACATGCAAG GGAATTGAATTGAATGTCATTTGTTATGGAATGGAACTAACTTGTTTCTTTATCGTTATACCATTTGATCAACTCAAACT ACAGAATGGAAATGTTCTTTCTGAGTTATCATAAATTATTCAAATATATGACGGTACGACATTTTAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0335200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGGAGATGGAGGCGGCGGTTCAGCCCCGTTGCCGGTGCCGACGCCGATGTCAAACTCGACTGCGCCGCCACCGTT TCTGAGCAAGACGTATGACATGGTGGATGACCCTGCAACGAACTCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTCG TGGTTTGGGATCCACCGGAATTTGCAAGGGACCTCTTGCCTAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCAGG CAGTTGAATACATATGGTTTCAGGAAGGTTGATCCTGATCGATGGGAATTTGCAAATGAAGGCTTTTTGAGGGGTCAAAA GCACTTGCTCAGGAGTATAACTCGACGTAAACCTGCCCATGGCCAGACTCAACAGGCTCAACAACCACATGGACAGAGTT CATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAATGTG CTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAGCCAGCTGCAAACAATGGTTCAACGCCTTCA GGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTGGCCAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTG TACAGCAAAATGAGAGCAATAGGCGCATATCTGAAGTCAGCAAAAAGCGCCGGCTCAAGCCGGACGGCAATGCTGAAACA GAGCGTGCTGCTGCACCTGATGGACAAATTGTTAAATATCAACCTCTGATTAATGAAGCTGCAAAAGCAATGCTAAAGCA GATTATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAGAACCCCAACAATTACTTGATTGGTGATGACTCATCAT CCGGTGCAATGGACAGTAGCAGCTCTTCAAGCTGGACTTCTGGAGCAACTCTTCAAGAGGTTCCTCCAGCTTCAGTGCAG CCTTCTCACATTCCAGATTCTACAGGGACTCAAGCACATATTCCCTCCGCTGAGAAACCTGTAATTGTATCTGTACCACA AGCTGCTGTTTCCGAAAAAGTTATAAAGAACAGAGCACATGAGGCGCCTACAATGCCTGTTTCTCAAGCAGATGTGATCA TGCCTGATATATCGTCAATACCAACAGAGATAGTGCCAGGAAGTATTCTTGATATTCCTGAAGAAAATTACACGGCTCCT GAGAAAGATGAGGGATATATGGATCCTACTTCACTGGGAGTTGATGAATTTCCCTTTGATTTTGAAGGTATTTCACCTGA TGGAGACATTGATGACTTATTAGGCAATTCTTCTCTTTGGGATGATCTTTTGCGATCGCCAATTCCAGAGGGTATCGAGA CGGATGTTGCTGAAGTATCCCAAGGGAATAAGATGCAGCCAACCGAAAATGGATGGGACAAAAAACATATGGATCAACTT ACAGAGCAGATGGGTCTTCTTTCTTCTGATACAGAAAGAGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0335200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDGDGGGGSAPLPVPTPMSNSTAPPPFLSKTYDMVDDPATNSIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVR QLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGQTQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNV LMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQNESNRRISEVSKKRRLKPDGNAET ERAAAPDGQIVKYQPLINEAAKAMLKQIMKWDTSRVESFNKNPNNYLIGDDSSSGAMDSSSSSSWTSGATLQEVPPASVQ PSHIPDSTGTQAHIPSAEKPVIVSVPQAAVSEKVIKNRAHEAPTMPVSQADVIMPDISSIPTEIVPGSILDIPEENYTAP EKDEGYMDPTSLGVDEFPFDFEGISPDGDIDDLLGNSSLWDDLLRSPIPEGIETDVAEVSQGNKMQPTENGWDKKHMDQL TEQMGLLSSDTERV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 - –
PANTHER
PTHR10015:SF310
15 489 475 1.6E-179 –
PANTHER
PTHR10015
15 489 475 1.6E-179
IPR027725
Gene3D
G3DSA:1.10.10.10
19 117 99 4.6E-39
IPR036388
SUPERFAMILY
SSF46785
23 116 94 4.49E-36
IPR036390
SMART
SM00415
23 116 94 6.5E-64
IPR000232
PRINTS
PR00056
27 50 24 6.4E-20
IPR000232
Pfam
PF00447
27 116 90 1.7E-30
IPR000232
PRINTS
PR00056
65 77 13 6.4E-20
IPR000232
ProSitePatterns
PS00434
66 90 25 -
IPR000232
PRINTS
PR00056
78 90 13 6.4E-20
IPR000232
MobiDBLite
mobidb-lite
116 135 20 - –
MobiDBLite
mobidb-lite
117 135 19 - –
Coils
Coil
144 171 28 - –
MobiDBLite
mobidb-lite
221 246 26 - –
MobiDBLite
mobidb-lite
222 240 19 - –
MobiDBLite
mobidb-lite
287 338 52 - –
MobiDBLite
mobidb-lite
287 334 48 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0335200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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