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LotjaGi2g1v0336800.1

Overview

Field Value
Gene ID LotjaGi2g1v0336800
Transcript ID LotjaGi2g1v0336800.1
Lotus japonicus genome version Gifu v1.2
Description Survival motor neuron protein; TAIR: AT4G16570.1 protein arginine methyltransferase 7; Swiss-Prot: sp|Q9VV74|SMN_DROME Survival motor neuron protein; TrEMBL-Plants: tr|I1J4R1|I1J4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0336800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81396372..81399325) extracted from Lotus japonicus Gifu genome v1.2.

GTAAGAACCATTTTCTATTTAATCGTAAACGATTAAGGTTTAAATATGAAGTCATGTAGTCATTAAATTCGAAGAGCATC GAGTATCCATCCATCCATTCGAAAGAGAACTCATTCGTGATTAAAAGAAAGGAAAAACTTGAAATTACAGGGACCAAATT GAAAAAGAAGAATGAGACGATAAGAAAGGGTTTAGGGTTTTGAAATTGCAGGGTTTAAGCAACAAATTATCTATCTGCGA GCTGAGCTGATTGATAATGGGGAAAGGAGATCTCTGGGACGATTCAGCTCTCATCAATGCCTTCGACAACGCTGTTTCCA CCTACAAGGTTCCTTCTCTTTTCTCTCTTTTCTTTTCCGACCAAAATTCGGTAGTGTTAATCATAGAATTTCGCTTTTGT TTCCAGAAAATGCATCGCAATGACAAAACCAAGAACAAAGATTGCTCCGCTGAAGAATCTGACGATGTGGTCGGAGAAAA TGGCTCCAACGTCGAGTAATTTTTGATACCAATGACAATGTTGTTTTTTTTTTCTGGGTAATTTTTTATTTTTCACATTC TATTTTTCTTTATTGAACATAGGGATGATGCTGAAGGGAAAAACAATGTTCTAGCTACCAATGTGCCTGATTCAGGTGAA ACTAGTTATGTACCAAAATTGGAAGAAAATCATGATGCAGGGTCAAATGTGGACCAGGCTAATCCAGATCCAACAAATGG TCAAATGCCAAGTGGGCATGATGGTTATGCGTATGAGCGAGGCGCTGATGAGTATAATCAGTTAGTTGCGGAGTACTATG AACTTGAGGAGAAAAGGTTGAAGATTTTGGAGCAAATCAATCAATATGGTGGTTGGAATTACCAATATGCGGATCCTGCG GCTAGTTCTGGTGTACCGGATGTACCGTACTCTAATTCTCAAGATTATTCGATGTCGGCATACCAAGTTTCTGATCTGAA TGTTGTATGTTCTTGTTGCCCGTGTTTTAGTCAATGTGGCTCGGCTCCTTGCACTTCAGTTCCTAGTTGTTCTGTGGGTG GAACATGTGCTGGTAAACCTTGTGACAATAATTCTGTGGAATTGGATAAGAAAATGTTGTTTCCTTGTGAAGATGAGAAA ATCCGTAAAATGGCTATGGGAGCAGCAGAGAGGGTTCTATCTGCTGTTAGAACAAACATTTCGAGTGATCTTAATGTAAA TGAGGGTAAGCATTACTACCTAAAAGTAGACAGGCATCGAATATCTTAGTTGCTGTTAAGTTACTTAGTAACATTTCCCT CCCATGTTTAGTTCTTGAATTTATTAGTCCTCTCTTGATGCTATTGTTATATTTTGTTTCTTATTTACCATTGTCATGAA TTCTTATCCCGGTGTTGCCATCATAAGTTGTCATCACTTTATGTTTATAAAAGCACACGCACCTGGGTGTGGTTCACTCG GCTGATATTAACAGGCAAATGCATGCAACCACATTTTTATGTTTCAATGACTTTACTTTATTGTCCAGATATATGGCTTT ATATAATTACTATCTAGATTTTCTTGGGTGTGGATGATGATACATTGCATAACTTGATGTGTTTACTCCACGCCATTCGC AGAGAAAGAGAGAAAGGATTCTGAACTTGAACAGATTGGTGGCTCAGAAACGGATCTTACTGCTGTTCTGAATGCTTGGT ATTCCGCTGGCTTCTATACTGGAAAGTAAGCTTTTATCGAAGTTTTGTTTGTGATAAATTTTAGTCCATTTTTCATTCAG GAACATATTTCTAACATGCTTTTGCATAGCTGGTATTTGATAAGATTTTTTTCAACTTAACAAAATGAATATAGGTATTC GGATTGTCATTGTATCAATTAGCTTGAACTTTGGTTTACAATACTATTTAACCACCATTTTAGGTAAATTGAATGTATTC TCTGCTGAACTTTCTTTCTAAAACAAACATCTGGTAAAATAGTGTGTTAATATATTACTACCAAATCAAAATATTTTTTC CCTATCTCCAATTGTGGGATCAGTGCTGAGTAATGAGTATATAAAGTGAGAAGACACTTGCGTTTTATACGCACTACTAT ATACACTTCATGTACTTGATTGAAGCACGTTTGTTTGGATCAAATGATTCAATTTTGCTACTACTGTTTTAGATCTCTCT TAAAAGTGTTGTATTCTTCAAAGTTGTTTGATATGTACGATTTTTGAGCTGTTTGGATATTCTGATACGATCTCTACTAT ATGCCTCATCGTTTGTGTAATGGTTGGAATTATGATATGATAACAGGTATCTTGTTGAACAATCTATTGGAAATAAAAGA CAGGAATAAACTCGGAAGATTTTCAAGTGGAAGCAAAGCAGCAGTGTCCTCATCTTGTCAATATACTAAATAGTCAGGGT ACTAAATATACATTTTTACATCATTGCTAAAGCAAGAGAGTGCTCGTTTTGTGATCGAATTGGAATTGCTGGCTAAATGC TAGTTTTGTGATCTCATTGGATTGCCGGCTAATTACAAATTTTGATGTCTTGTTACAAGTTTTCTTAGCAATATTTTGTT TTGCATTGTTAGGGAATGTTTTTGATCTCTGCTGCAGACATGGAGATATGGGGCCAAGTTTGGTGTTGAATGCTGTAGAC CTTTAAAATGCACAAATCATTGTAGTTGTTTTACATCTTAAAGTGCACCTCTTTGTTGAAGAGTTTACTAAGTACTATCA ATTACGCCATTTATTTTCAACTTACGGTTTTGAATTGAAAAATTGAAGTCTGGATAATGCCTTGTTAATTTAACGTAACT TGACCCGCAACGCTCACTAATAAACATGTTAATGTGGGGTAATATTATGTATGGAGATTAGAATGAAATCCAAGTCAATA AACAACCTGTTTAATAGTTGCGTTCTGTGCTCGTTTTAAAAAGCATTGCTTACCGGAAATGTGTTTAGGTTAGT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0336800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAAAGGAGATCTCTGGGACGATTCAGCTCTCATCAATGCCTTCGACAACGCTGTTTCCACCTACAAGAAAATGCA TCGCAATGACAAAACCAAGAACAAAGATTGCTCCGCTGAAGAATCTGACGATGTGGTCGGAGAAAATGGCTCCAACGTCG AGGATGATGCTGAAGGGAAAAACAATGTTCTAGCTACCAATGTGCCTGATTCAGGTGAAACTAGTTATGTACCAAAATTG GAAGAAAATCATGATGCAGGGTCAAATGTGGACCAGGCTAATCCAGATCCAACAAATGGTCAAATGCCAAGTGGGCATGA TGGTTATGCGTATGAGCGAGGCGCTGATGAGTATAATCAGTTAGTTGCGGAGTACTATGAACTTGAGGAGAAAAGGTTGA AGATTTTGGAGCAAATCAATCAATATGGTGGTTGGAATTACCAATATGCGGATCCTGCGGCTAGTTCTGGTGTACCGGAT GTACCGTACTCTAATTCTCAAGATTATTCGATGTCGGCATACCAAGTTTCTGATCTGAATGTTGTATGTTCTTGTTGCCC GTGTTTTAGTCAATGTGGCTCGGCTCCTTGCACTTCAGTTCCTAGTTGTTCTGTGGGTGGAACATGTGCTGGTAAACCTT GTGACAATAATTCTGTGGAATTGGATAAGAAAATGTTGTTTCCTTGTGAAGATGAGAAAATCCGTAAAATGGCTATGGGA GCAGCAGAGAGGGTTCTATCTGCTGTTAGAACAAACATTTCGAGTGATCTTAATGTAAATGAGGAGAAAGAGAGAAAGGA TTCTGAACTTGAACAGATTGGTGGCTCAGAAACGGATCTTACTGCTGTTCTGAATGCTTGGTATTCCGCTGGCTTCTATA CTGGAAAGTATCTTGTTGAACAATCTATTGGAAATAAAAGACAGGAATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0336800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKGDLWDDSALINAFDNAVSTYKKMHRNDKTKNKDCSAEESDDVVGENGSNVEDDAEGKNNVLATNVPDSGETSYVPKL EENHDAGSNVDQANPDPTNGQMPSGHDGYAYERGADEYNQLVAEYYELEEKRLKILEQINQYGGWNYQYADPAASSGVPD VPYSNSQDYSMSAYQVSDLNVVCSCCPCFSQCGSAPCTSVPSCSVGGTCAGKPCDNNSVELDKKMLFPCEDEKIRKMAMG AAERVLSAVRTNISSDLNVNEEKERKDSELEQIGGSETDLTAVLNAWYSAGFYTGKYLVEQSIGNKRQE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR39267
1 308 308 5.3E-91
IPR040424
Pfam
PF06003
4 43 40 5.6E-5
IPR010304
MobiDBLite
mobidb-lite
25 42 18 - –
MobiDBLite
mobidb-lite
25 78 54 - –
MobiDBLite
mobidb-lite
84 103 20 - –
MobiDBLite
mobidb-lite
87 101 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0336800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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