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Survival motor neuron protein (SMN)
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: survival of motor neuron-related-splicing factor 30-like [Cicer arietinum] gi|502126585|ref|XP_004499363.1| | 9 | ||
| – | PREDICTED: survival of motor neuron-related-splicing factor 30-like [Cicer arietinum] gi|502126585|ref|XP_004499363.1| | 9 | ||
| – | Survival motor neuron protein; TAIR: AT4G16570.1 protein arginine methyltransferase 7; Swiss-Prot: sp|Q9VV74|SMN_DROME Survival motor neuron protein; TrEMBL-Plants: tr|I1J4R1|I1J4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0336800 | 5 | ||
| – | Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700 | 11 | ||
| – | Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700 | 11 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 20.00 |