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LotjaGi2g1v0337200.1

Overview

Field Value
Gene ID LotjaGi2g1v0337200
Transcript ID LotjaGi2g1v0337200.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cellulose synthase-like protein; TAIR: AT3G03050.1 cellulose synthase-like D3; Swiss-Prot: sp|A2YU42|CSLD2_ORYSI Cellulose synthase-like protein D2; TrEMBL-Plants: tr|A0A0L9USG2|A0A0L9USG2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0337200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81423125..81428142) extracted from Lotus japonicus Gifu genome v1.2.

CTGGCTCCCCGCGTATAAGTCGTGTGAAGTAAAATCAGACATTCCGAATGTACCTCTCCGCCGCAGTCATAAAATCCAAA ACAATCAACAAAGTCACACAAATCCTTTTCCACTCTCTGTTTCTCTTCTCCATTTCCATCATTCATATTACTTACTTTAT TCAACATAGTTCTACATTTTTCATATGATGAACAAGAGAACTTGTAGTTCAAGTTCTTAGAATCCTTAAACGGTGTTTGG TTTTTGTTTTGTTTATTTGGGTTTTCAAAAAATTTGCAAGTTTGAAAATCTTGATCTTTTTTTTGGACTCGGTCCTGTTT TTTCAGACACAACAGACAGAGAGAGTTGACACTTTGACGGCTTCAGACACGCGCTTAGCTTCCTCTCTGCCTTTCAGACA CTCTTCCATTGCCGGGTTGTCTTTTGAGTCGGTAAGACATTTGGCACAATCTTTGTTTTCAATTGCATTTGTTTATAATT CATCAACTATGTCTTATTGCTACTTGCTACTTGCTACATTACACGGATATAAGTTGATTTGGTGTTTTTCTTTTATTTGT GTGTTTAGATTGTTGAATGATTATAAATTTTTCAGCTTTTATATAAGTCCTTGCTGATGAACTAGTGGTGTAGGGGTTGA TATTGGATGATGAAATTGAAATTACAGGTGCTGCTTCTGTAGTGTGTGTGTGTGAGAGAGATTGAGACTAATCATGATGT CCTCTACCTCATATTTGAACCACAAAAGCAATGAACTTGATCAGCAAAGTGAGAGTGGTAGTGGTAGTGGTGGTGGTGGT AGTAATAGTAGTGGCGACTTTGCTCTCTACAGGGTGGACATTCCTCAAACCCCTTATGACTCGCCAATCCAGATTACTAT GGAGAGGTCTGCTTCTCGGAGACTGGAGGACCAGTGCGTGTCGAATTCCTTGTTTACGGGCGGGTCTAATCAGGCTACTC GTGTTCTATTGAAGGAGAAAGTGATTGAATCAGAATCTAGCCATCCCCAGATGACTGGTGCAAAAGGGTCATCTTGTGAT GTGCCTGGCTGTGGTGGGAAGGTCATGAGTGATGAGAGAGGATTGGATATTCTCCCTTGTGAGTGTGGTTACAAGATTTG TGGAGATTGTTACAGAAATGCTTTGAGGGAATGTGAGGGGGTTTGTCCTGGATGCTGCGGGCCTTACAAGGACCCGAAGA TGATGAAAGAGGATGTACCGTTGCCTCCTGGTGTGTCAAAGATGGAGAGGAAGTTGTCGAAGATGAAATCGGGGAATTTT GCTAATGAATTTGATCAGGCTCAGTGGTTGTATGGAAACAAGGGGAGCTATGGATATGGGAATGCTATGTGGCCAAAAGA GTCTGAAAGTGATGCCAGTTCTGCTTCTGCTTCTGCTTCTGATTGGATGAGTGGTGACCCTAAAGTATTTCATGAGAAGC AGTGGAGACCTTTGACCCGGAAATTGAGTATTTCTGCTGCAATTTTGAGTCCATATAGGTATGAGACCCTTTTCCTCTTA ACTTAAACTCAAGTTGTAATCTCAACTCTCTAATATGTGATATTCAATTTGATTTAGTTATTTTAGGTGTTTGTTTATTA CTTAGAAAACACTTTTTTATGAAGGAAGACAGAAATGAAATAGGATAAACTTAAGTACTTAAAAGTACTAGAGCAGTTCA GGTGCAATTGTATGTGAATTTCATCTCTCACCATGTATTTTGTTGTTACTACAAATCGATAGCAAAACAATGCTCCAGTA GCTAAATTCAATCTCTTATCTCACATAATTTGCAGAAAACTGACTTCTGCACATTGATAGTAGAGTCTTCATTCTGCTTC AAACCAATCAAATACAGTGATTTACCCGTTGCATGACATTTTGTTTTGCTTGTCTTCTGATTCATAATTTTTACCATTTC CTTTTTTGTTGTTGTAGTTGTTTCTGTTTGTCTTGCTGCTGGATTTGATCACTTTGTGATATATGCTCTATCTACTTTAT GTAGTATTTTTTGAATCAATACATAATTGAACAATTAATCTAAAGTTCATTTTCATTTTGCTGTTTTCTTTTTCAGGCTC ATAATACTAGTTCGGCTTGTGGTTCTTGTTTTCTTCCTGAGGTGGAGGGTCCTAAACCCCAATGATGATGCAATCTGGCT GTGGTTTATGTCAGTCGTTTGTGAAATCTGGTTTGCCTTCTCCTGGCTGCTTGACCAGCTGCCTAAGCTCTTCCCCATAA ACCGTGACGCTGATCTCGATGCCTTGAAAGAGAAGTTTGAAACTCCTAATCCTGCTAATCCTGAAGGCAAGTCTGATCTC CCTGGAATAGACATGTTTGTGTCAACTGCAGATCCAGAAAAAGAACCACCGCTCGTTACTGCAAACACCATTCTTTCTAT TCTAGCTGCTGACTACCCTGTTGAGAAGCTTTCATGTTATGTCTCTGACGATGGAGGCGCGCTTCTAACTTTTGAGGCCA TGGCAGAGGCAGCAAGTTTTGCCAATTTGTGGGTTCCTTTTTGTAGGAAGCATGACATTGAACCGAGGAACCCAGAATCT TATTTTAATATGAAGAGGGATCCTTACAAGAACAAGGTTCGCTCTGACTTTGTGAGGGACCGCAGGCGGGTAAAGCGGGA GTATGATGAGTTTAAGGTAAGAATCAATGGCCTTCCTGATTCGATCCGGCGGCGTTCGGAAGCTTATAATGCTAGAGAGG AGATGAAAGCTATGAAGATGCAGAGAGAGAATCAAAGTGATGAACCATTGGAGATTGTGGAAGTTATTAAAGCTACATGG ATGGTTGATGGCACACACTGGCCTGGCACTTGGACTACTCCTGCATCACAGCATGCCAGAGGTGATCATTCCAGTATCAT ACAGGTAATGCTCAATATCAATTGGACAAATTCCTAAGCGCTTATTCCTAACCTAATTTAATAAGCTTATTGAAATAAAC TCAAAATCACTTATAGGCAGCTTATGAAATAAACTCCAAACAGTTTAAAGATAGGTCATAAACTATTTTCACAATCAAAT TTCTAAGAGTGCATACATGATTGAATTGCAATGTTATATCATATTTTGATATGAATATTAAATGTGCTGATCATAAGCCC TCTTTCAAATACAGGTAATGTTAAAACCTCCAAGTGATGAGCCACTGACTGGAACAACATCAGATTCAAATGCCATGGAT TTCAGTGAAGTTGATATTCGTCTTCCTCTGCTTGTCTATGTTTCTCGCGAGAAACGACCCGGCTATGATCACAACAAGAA GGCCGGGGCCATGAATGCCCTGGTTCGGTCCTCAGCCATCATGTCCAATGGCCCTTTCATACTCAACCTGGACTGTGACC ATTACATATACAACTCAAAAGCCTTAAGGGAAGGTATTTGCTTCATGATGGACCGCGGAGGGGAAAGGCTCAGCTACGTT CAATTTCCTCAAAGGTTCGAAGGAATTGACCCTTCTGATCGCTATGCCAATCACAACACTGTCTTCTTTGATGTCAACAT GCGTGCACTAGATGGGATTCAGGGTCCAGTATATGTTGGCACAGGTTGCTTGTTTCGAAGAACTGCTCTTTATGGCTTTG ATCCACCCCGGGTGAAAGAAGAATCTGGTGGTTGGTTTGGTAGTAAGAACAAGAAATCCTCAACAGTTGCCTCTGTCCCT GAAGCTAGTTCTGCTGATGATGAAGAAATGATGAACATTGCTCTTATTCCTAAAAGTTTCGGCAACTCAAGCCTTCTTGT TGATTCAGTCAAGGTGGCTGAGTTTGGAGGTAGGCCTCTTGCTGATCATCCATCTATAAAAAACGGACGTCCCCCTGGCG CTCTAACTCTTCGCCGGGATCTTCTTGATACTCCAACTGTTGCCGAGGCCATCGATGTGATCTCATGTTGGTATGAAGAT AAAACAGAATGGGGCCTCAGAATTGGGTGGATTTACGGGTCCGTGACCGAAGATGTTGTTACAGGTTACAGAATGCACAA TAGAGGATGGAGATCAGTGTATTGCGTGACCAAAAGAGATGCATTCAGAGGCACTGCTCCTATAAACTTAACAGATAGGC TCCATCAAGTTCTTCGTTGGGCAACAGGCTCGGTCGAGATCTTCTTCTCCCGGAACAATGCTCTCTTAGCTGGCTCTAGA TTGAAATTCCTGCAAAGAATTGCTTACCTCAACGTTGGAATCTACCCTTTCACTTCACTCTTCCTCGTTGTTTACTGCTT CATCCCTGCACTTTCCCTTTTCTCTGATCAGTTCATTGTTGGTACCCTTGAAGTCACATTCCTAGCCTACCTTTTAGGAA TCACACTGACCCTTGTGGCTCTTGCTGCTCTTGAGATCAAGTGGTCCGGTATCCATATTGACGAGTGGTGGAGGAATGAG CAGTTCTGGTTAATTGGAGGCACAAGCGCTCATCTAGTAGCTGTGTTTCAGGGAGTGCTAAAGGTGCTGTTTGGCATTGA GATTTCATTCACTCTGACATCGAAATCCTCGGCTGATGACGAGAACGACGAGTTTGCCGATATTTATGTGATCAAATGGA GCTCTCTGATGATACCACCAGTCACTATCATCATGGTTAATCTGATTGCGATCGCGGTCTCGGTTGTCAGGACTATATAC AGCGACGATCGTCACTGGAGCAGAATGATTGGAGGTGTGTTCTTCAGCTTTTGGGTGCTGGTTCATCTTTATCCATTTGC AAAGGGGCTTATGGGAAGAAGAGGTAAGACACCAACGATTGTGTTTGTTTGGTCTGGTCTTATATCCATCACTATATCAC TGCTCTGGGTTGCTATTAACCCTCCTTCTGGCAACAATCAAATTGGAGGGTCCTTTCAATTCCCTTGATTTTTCTAGTGC TCACTTCTCAGGTAGCACTTGTAAGTAACTCAGACAGGCTTTTTGGTTTTGAAGATTTTTTAGTTACCATTCATTTTGAC AAGCTGTTGCCATTGCTTGCTTACATTTTATCAATAATACATGGAAATTTTCATTTTA 

CDS sequence (LotjaGi2g1v0337200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGTCCTCTACCTCATATTTGAACCACAAAAGCAATGAACTTGATCAGCAAAGTGAGAGTGGTAGTGGTAGTGGTGG TGGTGGTAGTAATAGTAGTGGCGACTTTGCTCTCTACAGGGTGGACATTCCTCAAACCCCTTATGACTCGCCAATCCAGA TTACTATGGAGAGGTCTGCTTCTCGGAGACTGGAGGACCAGTGCGTGTCGAATTCCTTGTTTACGGGCGGGTCTAATCAG GCTACTCGTGTTCTATTGAAGGAGAAAGTGATTGAATCAGAATCTAGCCATCCCCAGATGACTGGTGCAAAAGGGTCATC TTGTGATGTGCCTGGCTGTGGTGGGAAGGTCATGAGTGATGAGAGAGGATTGGATATTCTCCCTTGTGAGTGTGGTTACA AGATTTGTGGAGATTGTTACAGAAATGCTTTGAGGGAATGTGAGGGGGTTTGTCCTGGATGCTGCGGGCCTTACAAGGAC CCGAAGATGATGAAAGAGGATGTACCGTTGCCTCCTGGTGTGTCAAAGATGGAGAGGAAGTTGTCGAAGATGAAATCGGG GAATTTTGCTAATGAATTTGATCAGGCTCAGTGGTTGTATGGAAACAAGGGGAGCTATGGATATGGGAATGCTATGTGGC CAAAAGAGTCTGAAAGTGATGCCAGTTCTGCTTCTGCTTCTGCTTCTGATTGGATGAGTGGTGACCCTAAAGTATTTCAT GAGAAGCAGTGGAGACCTTTGACCCGGAAATTGAGTATTTCTGCTGCAATTTTGAGTCCATATAGGCTCATAATACTAGT TCGGCTTGTGGTTCTTGTTTTCTTCCTGAGGTGGAGGGTCCTAAACCCCAATGATGATGCAATCTGGCTGTGGTTTATGT CAGTCGTTTGTGAAATCTGGTTTGCCTTCTCCTGGCTGCTTGACCAGCTGCCTAAGCTCTTCCCCATAAACCGTGACGCT GATCTCGATGCCTTGAAAGAGAAGTTTGAAACTCCTAATCCTGCTAATCCTGAAGGCAAGTCTGATCTCCCTGGAATAGA CATGTTTGTGTCAACTGCAGATCCAGAAAAAGAACCACCGCTCGTTACTGCAAACACCATTCTTTCTATTCTAGCTGCTG ACTACCCTGTTGAGAAGCTTTCATGTTATGTCTCTGACGATGGAGGCGCGCTTCTAACTTTTGAGGCCATGGCAGAGGCA GCAAGTTTTGCCAATTTGTGGGTTCCTTTTTGTAGGAAGCATGACATTGAACCGAGGAACCCAGAATCTTATTTTAATAT GAAGAGGGATCCTTACAAGAACAAGGTTCGCTCTGACTTTGTGAGGGACCGCAGGCGGGTAAAGCGGGAGTATGATGAGT TTAAGGTAAGAATCAATGGCCTTCCTGATTCGATCCGGCGGCGTTCGGAAGCTTATAATGCTAGAGAGGAGATGAAAGCT ATGAAGATGCAGAGAGAGAATCAAAGTGATGAACCATTGGAGATTGTGGAAGTTATTAAAGCTACATGGATGGTTGATGG CACACACTGGCCTGGCACTTGGACTACTCCTGCATCACAGCATGCCAGAGGTGATCATTCCAGTATCATACAGGTAATGT TAAAACCTCCAAGTGATGAGCCACTGACTGGAACAACATCAGATTCAAATGCCATGGATTTCAGTGAAGTTGATATTCGT CTTCCTCTGCTTGTCTATGTTTCTCGCGAGAAACGACCCGGCTATGATCACAACAAGAAGGCCGGGGCCATGAATGCCCT GGTTCGGTCCTCAGCCATCATGTCCAATGGCCCTTTCATACTCAACCTGGACTGTGACCATTACATATACAACTCAAAAG CCTTAAGGGAAGGTATTTGCTTCATGATGGACCGCGGAGGGGAAAGGCTCAGCTACGTTCAATTTCCTCAAAGGTTCGAA GGAATTGACCCTTCTGATCGCTATGCCAATCACAACACTGTCTTCTTTGATGTCAACATGCGTGCACTAGATGGGATTCA GGGTCCAGTATATGTTGGCACAGGTTGCTTGTTTCGAAGAACTGCTCTTTATGGCTTTGATCCACCCCGGGTGAAAGAAG AATCTGGTGGTTGGTTTGGTAGTAAGAACAAGAAATCCTCAACAGTTGCCTCTGTCCCTGAAGCTAGTTCTGCTGATGAT GAAGAAATGATGAACATTGCTCTTATTCCTAAAAGTTTCGGCAACTCAAGCCTTCTTGTTGATTCAGTCAAGGTGGCTGA GTTTGGAGGTAGGCCTCTTGCTGATCATCCATCTATAAAAAACGGACGTCCCCCTGGCGCTCTAACTCTTCGCCGGGATC TTCTTGATACTCCAACTGTTGCCGAGGCCATCGATGTGATCTCATGTTGGTATGAAGATAAAACAGAATGGGGCCTCAGA ATTGGGTGGATTTACGGGTCCGTGACCGAAGATGTTGTTACAGGTTACAGAATGCACAATAGAGGATGGAGATCAGTGTA TTGCGTGACCAAAAGAGATGCATTCAGAGGCACTGCTCCTATAAACTTAACAGATAGGCTCCATCAAGTTCTTCGTTGGG CAACAGGCTCGGTCGAGATCTTCTTCTCCCGGAACAATGCTCTCTTAGCTGGCTCTAGATTGAAATTCCTGCAAAGAATT GCTTACCTCAACGTTGGAATCTACCCTTTCACTTCACTCTTCCTCGTTGTTTACTGCTTCATCCCTGCACTTTCCCTTTT CTCTGATCAGTTCATTGTTGGTACCCTTGAAGTCACATTCCTAGCCTACCTTTTAGGAATCACACTGACCCTTGTGGCTC TTGCTGCTCTTGAGATCAAGTGGTCCGGTATCCATATTGACGAGTGGTGGAGGAATGAGCAGTTCTGGTTAATTGGAGGC ACAAGCGCTCATCTAGTAGCTGTGTTTCAGGGAGTGCTAAAGGTGCTGTTTGGCATTGAGATTTCATTCACTCTGACATC GAAATCCTCGGCTGATGACGAGAACGACGAGTTTGCCGATATTTATGTGATCAAATGGAGCTCTCTGATGATACCACCAG TCACTATCATCATGGTTAATCTGATTGCGATCGCGGTCTCGGTTGTCAGGACTATATACAGCGACGATCGTCACTGGAGC AGAATGATTGGAGGTGTGTTCTTCAGCTTTTGGGTGCTGGTTCATCTTTATCCATTTGCAAAGGGGCTTATGGGAAGAAG AGGTAAGACACCAACGATTGTGTTTGTTTGGTCTGGTCTTATATCCATCACTATATCACTGCTCTGGGTTGCTATTAACC CTCCTTCTGGCAACAATCAAATTGGAGGGTCCTTTCAATTCCCTTGA 

Protein sequence (LotjaGi2g1v0337200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMSSTSYLNHKSNELDQQSESGSGSGGGGSNSSGDFALYRVDIPQTPYDSPIQITMERSASRRLEDQCVSNSLFTGGSNQ ATRVLLKEKVIESESSHPQMTGAKGSSCDVPGCGGKVMSDERGLDILPCECGYKICGDCYRNALRECEGVCPGCCGPYKD PKMMKEDVPLPPGVSKMERKLSKMKSGNFANEFDQAQWLYGNKGSYGYGNAMWPKESESDASSASASASDWMSGDPKVFH EKQWRPLTRKLSISAAILSPYRLIILVRLVVLVFFLRWRVLNPNDDAIWLWFMSVVCEIWFAFSWLLDQLPKLFPINRDA DLDALKEKFETPNPANPEGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA ASFANLWVPFCRKHDIEPRNPESYFNMKRDPYKNKVRSDFVRDRRRVKREYDEFKVRINGLPDSIRRRSEAYNAREEMKA MKMQRENQSDEPLEIVEVIKATWMVDGTHWPGTWTTPASQHARGDHSSIIQVMLKPPSDEPLTGTTSDSNAMDFSEVDIR LPLLVYVSREKRPGYDHNKKAGAMNALVRSSAIMSNGPFILNLDCDHYIYNSKALREGICFMMDRGGERLSYVQFPQRFE GIDPSDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRVKEESGGWFGSKNKKSSTVASVPEASSADD EEMMNIALIPKSFGNSSLLVDSVKVAEFGGRPLADHPSIKNGRPPGALTLRRDLLDTPTVAEAIDVISCWYEDKTEWGLR IGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLAGSRLKFLQRI AYLNVGIYPFTSLFLVVYCFIPALSLFSDQFIVGTLEVTFLAYLLGITLTLVALAALEIKWSGIHIDEWWRNEQFWLIGG TSAHLVAVFQGVLKVLFGIEISFTLTSKSSADDENDEFADIYVIKWSSLMIPPVTIIMVNLIAIAVSVVRTIYSDDRHWS RMIGGVFFSFWVLVHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAINPPSGNNQIGGSFQFP 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 32 32 -
MobiDBLite 1 36 36 -
Phobius 1 250 250 -
PANTHER 58 1103 1046 0.0
PANTHER 58 1103 1046 0.0
SUPERFAMILY 93 163 71 1.77E-7
Gene3D 103 169 67 4.1E-6
Pfam 110 159 50 1.8E-12
Phobius 251 276 26 -
TMHMM 253 275 23 -
Phobius 277 287 11 -
TMHMM 288 307 20 -
Phobius 288 307 20 -
Phobius 308 880 573 -
Pfam 346 1099 754 0.0
SUPERFAMILY 361 901 541 1.5E-9
Coils 471 491 21 -
Gene3D 547 701 155 1.2E-13
Phobius 881 905 25 -
TMHMM 885 907 23 -
Phobius 906 910 5 -
Phobius 911 937 27 -
TMHMM 914 936 23 -
Phobius 938 1013 76 -
TMHMM 956 978 23 -
TMHMM 1006 1028 23 -
Phobius 1014 1033 20 -
Phobius 1034 1038 5 -
TMHMM 1038 1060 23 -
Phobius 1039 1060 22 -
Phobius 1061 1071 11 -
Phobius 1072 1092 21 -
TMHMM 1073 1092 20 -
Phobius 1093 1108 16 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).
Biological process Cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0337200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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