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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0338100 |
| Transcript ID | LotjaGi2g1v0338100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor IWS1, putative; TAIR: AT1G32130.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4ICK8|IWS1_ARATH Protein IWS1 homolog 1; TrEMBL-Plants: tr|V7CJ79|V7CJ79_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81519393..81523539) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACCGCTATCAAACAAACTCACAAATTCGCTTTTTATTTTCTAGCTTCTTTAAATAAACCGACCGATTACTTCACA AATTCCCGGTTCAACCGGGTCGGCGGTCTTCTATACCTCCTCCCATCTCATCTTCATCCCGCCACTCCAATTCTCTTCTC TTTTTATCGCAATCTCCTGTTGACTTTTTCTTCACTCTTCATTCTCTCGCACATTCACATTCACAAACCCTAATTCACTA AAGTTATCACAATTCTCAATCAAATCAAATCAACGATTTCTGCAACCACAGCGTAATCATCATCATCAACCATGGGTTAC CAAGACGATCCGTGAGTTTCCCTCTCTCAATTTCCCCCTTTTCGCGTTAGGGTTTTGGTTTTGGTTTTCCAACTCTTCAA TTTTTCAGGAATCGCGACGAGGACGGAGAACCATTGATGGACTACGACGACGTTCAATCCGATCGGGAGCCATCTCCGGA GCCGAACAACAACCTCAACGATTTCGAGGAAGATGTCGACGATTGGGGCAACCGTGAACGATCTCAGACTCCGGTGTACG ACAACGACTCGTCGAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGCGGCGGTGGTGGGAGCCAGTCGGTGGCTCCG GATCTCGAGGATGAGGTGGAGGAGGAGGATTTTCCGGTGAGGTCTGATGAGGGGGAAGGGAGGAAGAGGAAGAAGGAGAA GGATGGTGGATCAGGGAAGAAGGAGAAGCGGCTTAAAGGCGATACGAGGTTCGGAAGTAGCAGCAGCGGCGGAAAGGGAG GTTCCAAATTTGGGTCTGCTAAGAAAGGGTTTGGGGGGAAGGCAGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGG GATACCATTGCTGGTGGAGATTCTGAGGTATTGATTTTCTATGTATTGCCCTTTATGCTTCTAGGATGATTGCTTAAATT TCATTCAATTTGGTACATATGTATGTTATGATGGACTTATAATCATGATTATTCTTACTTCAAAGTGTGTATTTGAGAGA TTGAGGGTTTTATAAGTGAGTGAATATGGTGGTTATTCCTGCATTTTGCAAGCTTTGTGGAAATCCTGTTCTGCATTTTA ATTGATTCTCATTAACTTGGTTTCTTTTGATGGTGGTAGTTTTATGGATTACACTATTGGTTGTGAATTGTTTCTGATGG TAGTTTTTGGTTTTCATAAAGGATGATCAAGAGGGTGTCAGAAATTTGGATGATGACAACTTCATAGATGACACTGGAGT GGAACCTGGTTTCTATGGTAACTACAATGAACCAAGCTCTCCTGGTGAAGCGCCTCAGGTTGATAATTTATTTCACTAAT CTTTAATTCCTGCTTAAATTATTCTGAAATCAAATCATCTGTTTTTTTATAACTTTGTGGTTGAAAGAAGGTCCTGCAAC CAGCAGTTGAATGTTGGAAACTGAAATATGTAATGGATGTTGTATCAGGCCAAGCTTTCATGTCATGTTATGCTATTCTT TCTTTTTTATATTTTAGGCAGACACAACCTTCTCCAATTTTTTGTGTTGTTTGTCAAAAGCTTTTATGATTCCTTTGTCT TACTGTTATATGGATTTTTTCTAGGCAGAGGAAGGTGAAGAAGATGATGAAATCAATGATCTTTTTAAGATGGGTAAGAA AAAGAAGAAGAACGAAAGAAGTCCTGCAGAGATAGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTG AAGAGGATGCTGAACTCAATAGACAGGGGAAGCCTGCTATTAATAAACTCAAGAAGCTGCCTCTTCTTACAGAAGTCCTC TCAAAGTAAGCAGTCGTTTTCCTGCTACATTATGTGTGCAGACTGGTGTTTTCTCAATCTTTTATATTTCTCTTTTCCAT ATTTGAATAACTTTCCATCCACTAATTTGCAGGAAACAGCTCCAGCTAGAATTTTTAGATCATGGAGTCCTAACTTTATT GAAGAATTGGCTTGAGCCGCTTCCTGATGGAAGCTTGCCAAATATAAACATACGCACTGCAATTTTGAAGATTTTGAATG ATGTATCTTGAGTAGATCCATTATAATATTTTAGATGCATATGCAACTCTCTTTTTCAAAATTATTTTGCATCTTATTCA TGTATCTTGTCATGCAGTTTCCTATAGACCTAGAGCAGATTGACAGAAGAGAACAGCTGAAGAGGAGTGGTCTTGGGAAG GTAGGGTTTCCATTATCCATCTGAATACATGCTATATTTTAGTAGCACTTAAAACCAAATTCACCCCCCCCCCCCCCCAG CCCCCCGAAAAAAAAGATGGCATGTTTTGGAGGTAATACCTTTGACTGATTTTTACCATCTTAACAGGTAATTATGTTTT TATCAAAGTCTGATGAAGAGATAAATGTAAATAGGAAACTAGCCAAGGAACTGGTTGATAAATGGGTAAGTAATGCATGA CTAAACCCTTGTTCCATCTTAATCTTTTATCTTCCTGTCAAAGCTGTTCAATTTTATTCTAGTTGAGTGATCTTCTCTGT TGTGTTTTACTGTTACTTGAAATCTAGGATTCATGAAAAACACTATTGTATGTATTTTGTTTCATGAATTCATTTTAAGC AATAACTTAACATTTTGTTAACACTGTAATTGCAGAGCCGACCTATATTTAATAAGAGTACACGGTTTGAAGACATGCGA AATATTGAGGATGAGAGGGCTCCTTTCAGGAGGCCATCAGTCAAAAAGTACTCGTATCATTTTTTTCCATTGCTGCTCCT GCAGTATTATAAGTCCTTATTGCAACATGTTGAATTTGTATAATTTTGCTGAACTATTTTGTTGAACTCTTACAGGCCGG CAAATAAAGCTGCAGGAATGCAATCTAGAGACAGTGACCTTGATTTGGATCTTCCACAGTAAGGCTCAAGTGGCATTTAT GAACTTGTGGAGCTGGTGAATTGAGAAATCACTAAAACAATCTTTCTGACTGTAATGCAGGCCTAGGTCTGGTCAGTCCT CTTCCAGGCAACATGCATCAAGACCAGAAGCAACACCTATGGATTTTGTGATCCGTCCCCAATCTAAAGTTGATCCAGAA GAAGTTAGAGCACGGGCAAAGCAAGCTTCACATGATCAACAGCGTATGAAGGTTGGTGTTCCTTTTTTTTAGATTCTGTC ATTTGTGATTGTTTTAACCCCTTTTTTTTTCTCTTCAAGCAATATGATAATCGTATGCAAATAACTTCAATTGACTGTGG ATTTGTTAACTGTAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAGACAGCTTCAGGCTACAAAACTGAG TGTGGAAGGTCGTGGTATGATCAAATATCTGTAGATGGAAGGATTTTTTGGTCCTGCAAGTTTCAAATAATGTGCTTGCC TTTATGGGAGAATGCAGTGAGCTCCTTCCTTGGCCTGTGTAGTGGTATGATCAAACATTTGTAGATGGAAGGATTTGTTG GTCCTGCAAGTTTCAAATAATGTGCTGCCTTTACGAGAGAATGCAGTGAGCTCCTTCCTTGGCCTGTTTTCGGTGATCTG ATTATATTTTGATTGGTGGTGTGATGAAATTACTCACCCCTTTGCTGCATTTGTTGTGTAATAATACATTGCAACAGTAA ATCCAAACTTTAAGCTCTTGTGTATTATTTCTTCTGTTAAATAATCAAAGCCTCGGATTGCATAATTTAATGAGAATTAG GATTCTGCATGCATAACAAAAAAAAGTTCTTGAACTTTTTACAAAGGCCCCGCGATGGGTGCCAAAATGTTCTAGAATAA AACCTTAAATTAGATAGGCAGAGTGAAAGGAGAACTTTGAGTTTTATTCAGTATAGAAATGAACAGACAATGAGTAAGGA TGACCCCTTTTATATAGTAGGTTGGGTCTTGATACATCAAACTCAAGTTGTTAAATTAACAAGAAAGGAGGAGCTAAATT TGGGATTCCTAGGAGACTCGACCAAATAGCACATGACGCGTTTGTTCCTTGGCACACCTGAAAATGTTATTTGGACGAAC CCGAACAGCTTGACAACAGTGCAATGATGTTCCTTTGTGAATGGCAGAATTGAAATATAGTGCAAAC
CDS sequence (LotjaGi2g1v0338100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTACCAAGACGATCCGAATCGCGACGAGGACGGAGAACCATTGATGGACTACGACGACGTTCAATCCGATCGGGA GCCATCTCCGGAGCCGAACAACAACCTCAACGATTTCGAGGAAGATGTCGACGATTGGGGCAACCGTGAACGATCTCAGA CTCCGGTGTACGACAACGACTCGTCGAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGCGGCGGTGGTGGGAGCCAG TCGGTGGCTCCGGATCTCGAGGATGAGGTGGAGGAGGAGGATTTTCCGGTGAGGTCTGATGAGGGGGAAGGGAGGAAGAG GAAGAAGGAGAAGGATGGTGGATCAGGGAAGAAGGAGAAGCGGCTTAAAGGCGATACGAGGTTCGGAAGTAGCAGCAGCG GCGGAAAGGGAGGTTCCAAATTTGGGTCTGCTAAGAAAGGGTTTGGGGGGAAGGCAGGGAAGGATCATGATGGTGAAGTT AAGGAGATGTGGGATACCATTGCTGGTGGAGATTCTGAGGATGATCAAGAGGGTGTCAGAAATTTGGATGATGACAACTT CATAGATGACACTGGAGTGGAACCTGGTTTCTATGGTAACTACAATGAACCAAGCTCTCCTGGTGAAGCGCCTCAGGCAG AGGAAGGTGAAGAAGATGATGAAATCAATGATCTTTTTAAGATGGGTAAGAAAAAGAAGAAGAACGAAAGAAGTCCTGCA GAGATAGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAAGAGGATGCTGAACTCAATAGACAGGG GAAGCCTGCTATTAATAAACTCAAGAAGCTGCCTCTTCTTACAGAAGTCCTCTCAAAGAAACAGCTCCAGCTAGAATTTT TAGATCATGGAGTCCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCCTGATGGAAGCTTGCCAAATATAAACATACGC ACTGCAATTTTGAAGATTTTGAATGATTTTCCTATAGACCTAGAGCAGATTGACAGAAGAGAACAGCTGAAGAGGAGTGG TCTTGGGAAGGTAATTATGTTTTTATCAAAGTCTGATGAAGAGATAAATGTAAATAGGAAACTAGCCAAGGAACTGGTTG ATAAATGGAGCCGACCTATATTTAATAAGAGTACACGGTTTGAAGACATGCGAAATATTGAGGATGAGAGGGCTCCTTTC AGGAGGCCATCAGTCAAAAAGCCGGCAAATAAAGCTGCAGGAATGCAATCTAGAGACAGTGACCTTGATTTGGATCTTCC ACAGCCTAGGTCTGGTCAGTCCTCTTCCAGGCAACATGCATCAAGACCAGAAGCAACACCTATGGATTTTGTGATCCGTC CCCAATCTAAAGTTGATCCAGAAGAAGTTAGAGCACGGGCAAAGCAAGCTTCACATGATCAACAGCGTATGAAGATGAAT AAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAGACAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGAT CAAATATCTGTAG
Protein sequence (LotjaGi2g1v0338100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYQDDPNRDEDGEPLMDYDDVQSDREPSPEPNNNLNDFEEDVDDWGNRERSQTPVYDNDSSKSKPRKRLIKKGGGGGSQ SVAPDLEDEVEEEDFPVRSDEGEGRKRKKEKDGGSGKKEKRLKGDTRFGSSSSGGKGGSKFGSAKKGFGGKAGKDHDGEV KEMWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVEPGFYGNYNEPSSPGEAPQAEEGEEDDEINDLFKMGKKKKKNERSPA EIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIR TAILKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNIEDERAPF RRPSVKKPANKAAGMQSRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMN KKLQQLRAPKKRQLQATKLSVEGRGMIKYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 219 | 219 | - | – | |
| PANTHER | 6 | 510 | 505 | 7.1E-220 | – | |
| PANTHER | 6 | 510 | 505 | 7.1E-220 | – | |
| MobiDBLite | 98 | 126 | 29 | - | – | |
| MobiDBLite | 149 | 187 | 39 | - | – | |
| Gene3D | 239 | 386 | 148 | 5.6E-54 | ||
| Coils | 246 | 266 | 21 | - | – | |
| SUPERFAMILY | 295 | 383 | 89 | 3.92E-5 | ||
| ProSiteProfiles | 300 | 383 | 84 | 22.284 | ||
| Pfam | 325 | 380 | 56 | 1.3E-13 | ||
| MobiDBLite | 394 | 493 | 100 | - | – | |
| MobiDBLite | 427 | 442 | 16 | - | – | |
| MobiDBLite | 455 | 480 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0338100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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