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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357438195|ref|XP_003589373.1| | 21 | ||
| – | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cucumis sativus] gi|449448454|ref|XP_004141981.1| | 11 | ||
| – | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cucumis sativus] gi|449448454|ref|XP_004141981.1| | 9 | ||
| – | BAH domain,TFIIS helical bundle-like domain isoform 1 [Theobroma cacao] gi|508773378|gb|EOY20634.1| | 15 | ||
| – | PREDICTED: transcription elongation factor A protein 3-like [Cicer arietinum] gi|502136750|ref|XP_004502818.1| | 29 | ||
| – | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cicer arietinum] gi|502136910|ref|XP_004502892.1| | 8 | ||
| – | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cicer arietinum] gi|502136910|ref|XP_004502892.1| | 12 | ||
| – | Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357466899|ref|XP_003603734.1| | 22 | ||
| – | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b-like isoform X1 [Cicer arietinum] gi|502108022|ref|XP_004493371.1| | 11 | ||
| – | PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b-like isoform X6 [Cicer arietinum] gi|502108043|ref|XP_004493376.1| | 12 | ||
| – | PREDICTED: homeobox protein LUMINIDEPENDENS-like [Glycine max] gi|356570954|ref|XP_003553647.1| | 13 | ||
| – | PREDICTED: homeobox protein LUMINIDEPENDENS-like isoform X1 [Cicer arietinum] gi|502112497|ref|XP_004494350.1| | 13 | ||
| – | PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502090725|ref|XP_004489321.1| | 16 | ||
| – | PREDICTED: microtubule-associated protein futsch-like isoform X1 [Cicer arietinum] gi|502126381|ref|XP_004499286.1| | 6 | ||
| – | PREDICTED: microtubule-associated protein futsch-like isoform X1 [Cicer arietinum] gi|502126381|ref|XP_004499286.1| | 9 | ||
| – | BAH domain-containing protein, putative; TAIR: AT3G48050.1 protein SUO; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|K7KVT9|K7KVT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183300 | 17 | ||
| – | Transcription elongation factor; TAIR: AT2G38560.1 transcript elongation factor IIS; Swiss-Prot: sp|Q9ZVH8|RDO2_ARATH Transcription elongation factor TFIIS; TrEMBL-Plants: tr|I1JYC9|I1JYC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305500 | 32 | ||
| – | Transcription elongation factor; TAIR: AT2G38560.1 transcript elongation factor IIS; Swiss-Prot: sp|Q9ZVH8|RDO2_ARATH Transcription elongation factor TFIIS; TrEMBL-Plants: tr|I1JYC9|I1JYC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305500 | 32 | ||
| – | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G09850.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0L9UDX4|A0A0L9UDX4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0315200 | 13 | ||
| – | Lysine-specific histone demethylase 1 like 1; TAIR: AT4G16310.1 LSD1-like 3; Swiss-Prot: sp|F4JLS1|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3; TrEMBL-Plants: tr|A0A072V301|A0A072V301_MEDTR Polyamine oxidase; Found in the gene: LotjaGi1g1v0425700 | 20 | ||
| – | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G05140.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b; TrEMBL-Plants: tr|A0A1J7HRT6|A0A1J7HRT6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0660600 | 13 | ||
| – | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G05140.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b; TrEMBL-Plants: tr|A0A1J7HRT6|A0A1J7HRT6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0660600 | 13 | ||
| – | Homeobox protein LUMINIDEPENDENS; TAIR: AT4G02560.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q38796|LUMI_ARATH Homeobox protein LUMINIDEPENDENS; TrEMBL-Plants: tr|I1NB35|I1NB35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0767300 | 12 | ||
| – | BAH domain-containing protein; TAIR: AT3G48060.1 BAH and TFIIS domain-containing protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0B2Q028|A0A0B2Q028_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0249800 | 19 | ||
| – | Transcription factor IWS1, putative; TAIR: AT1G32130.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4ICK8|IWS1_ARATH Protein IWS1 homolog 1; TrEMBL-Plants: tr|V7CJ79|V7CJ79_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338100 | 10 | ||
| – | Transcription factor IWS1, putative; TAIR: AT1G32130.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4ICK8|IWS1_ARATH Protein IWS1 homolog 1; TrEMBL-Plants: tr|V7CJ79|V7CJ79_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338100 | 9 | ||
| – | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G09850.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|I1KTE5|I1KTE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0406600 | 13 | ||
| – | Transcription elongation factor (TFIIS) family protein, putative; TAIR: AT4G24200.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|B2J717|MURC_NOSP7 UDP-N-acetylmuramate--L-alanine ligase; TrEMBL-Plants: tr|I1MC29|I1MC29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0004800 | 9 | ||
| – | Transcription elongation factor (TFIIS) family protein, putative; TAIR: AT4G24200.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|Q7Y2D5|PORTL_BPKMV Portal protein; TrEMBL-Plants: tr|I1MC29|I1MC29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0004900 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 3.45 |