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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017923
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 28 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.536s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0205839.1
n.a. Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357438195|ref|XP_003589373.1| chr0 102471086 102476956 -
2 domain predictions
1 GO term
Lj0g3v0292029.1
n.a. PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cucumis sativus] gi|449448454|ref|XP_004141981.1| chr0 151519927 151522323 +
5 domain predictions
1 GO term
Lj0g3v0292029.2
n.a. PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cucumis sativus] gi|449448454|ref|XP_004141981.1| chr0 151520227 151522629 +
5 domain predictions
1 GO term
Lj1g3v0415250.1
n.a. BAH domain,TFIIS helical bundle-like domain isoform 1 [Theobroma cacao] gi|508773378|gb|EOY20634.1| chr1 5202583 5210505 -
5 domain predictions
1 GO term
Lj1g3v1134040.1
n.a. PREDICTED: transcription elongation factor A protein 3-like [Cicer arietinum] gi|502136750|ref|XP_004502818.1| chr1 14045807 14050535 -
5 domain predictions
1 GO term
Lj1g3v1254820.1
n.a. PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cicer arietinum] gi|502136910|ref|XP_004502892.1| chr1 15146707 15149391 +
5 domain predictions
1 GO term
Lj1g3v1254820.2
n.a. PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Cicer arietinum] gi|502136910|ref|XP_004502892.1| chr1 15146707 15149391 +
5 domain predictions
1 GO term
Lj1g3v2143360.1
n.a. Lysine-specific histone demethylase-like protein [Medicago truncatula] gi|357466899|ref|XP_003603734.1| chr1 25918472 25925436 -
3 domain predictions
1 GO term
Lj1g3v4093500.1
n.a. PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b-like isoform X1 [Cicer arietinum] gi|502108022|ref|XP_004493371.1| chr1 48515830 48519929 -
5 domain predictions
1 GO term
Lj1g3v4093500.2
n.a. PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b-like isoform X6 [Cicer arietinum] gi|502108043|ref|XP_004493376.1| chr1 48515830 48520129 -
5 domain predictions
1 GO term
Lj1g3v4915280.1
n.a. PREDICTED: homeobox protein LUMINIDEPENDENS-like [Glycine max] gi|356570954|ref|XP_003553647.1| chr1 59493941 59502816 -
3 domain predictions
1 GO term
Lj1g3v4915280.2
n.a. PREDICTED: homeobox protein LUMINIDEPENDENS-like isoform X1 [Cicer arietinum] gi|502112497|ref|XP_004494350.1| chr1 59495678 59502816 -
3 domain predictions
1 GO term
Lj2g3v1019790.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502090725|ref|XP_004489321.1| chr2 15772873 15779894 -
5 domain predictions
1 GO term
Lj2g3v1510670.1
n.a. PREDICTED: protein IWS1 homolog [Glycine max] gi|356531459|ref|XP_003534295.1| chr2 23961652 23974555 -
3 domain predictions
1 GO term
Lj2g3v1510680.1
n.a. PREDICTED: protein IWS1 homolog [Cicer arietinum] gi|502162322|ref|XP_004512465.1| chr2 23962837 23976235 -
3 domain predictions
1 GO term
Lj5g3v0238160.1
n.a. PREDICTED: microtubule-associated protein futsch-like isoform X1 [Cicer arietinum] gi|502126381|ref|XP_004499286.1| chr5 1954222 1962537 -
3 domain predictions
1 GO term
Lj5g3v0238160.2
n.a. PREDICTED: microtubule-associated protein futsch-like isoform X1 [Cicer arietinum] gi|502126381|ref|XP_004499286.1| chr5 1964401 1969774 -
5 domain predictions
1 GO term
LotjaGi1g1v0183300.1
n.a. BAH domain-containing protein, putative; TAIR: AT3G48050.1 protein SUO; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|K7KVT9|K7KVT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183300 LjG1.1_chr1 35698723 35707961 -
3 domain predictions
1 GO term
LotjaGi1g1v0305500.1
n.a. Transcription elongation factor; TAIR: AT2G38560.1 transcript elongation factor IIS; Swiss-Prot: sp|Q9ZVH8|RDO2_ARATH Transcription elongation factor TFIIS; TrEMBL-Plants: tr|I1JYC9|I1JYC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305500 LjG1.1_chr1 74440649 74445508 -
3 domain predictions
1 GO term
LotjaGi1g1v0305500.2
n.a. Transcription elongation factor; TAIR: AT2G38560.1 transcript elongation factor IIS; Swiss-Prot: sp|Q9ZVH8|RDO2_ARATH Transcription elongation factor TFIIS; TrEMBL-Plants: tr|I1JYC9|I1JYC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305500 LjG1.1_chr1 74441916 74445202 -
3 domain predictions
1 GO term
LotjaGi1g1v0315200.1
n.a. Transcription elongation factor (TFIIS) family protein; TAIR: AT5G09850.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0L9UDX4|A0A0L9UDX4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0315200 LjG1.1_chr1 76112346 76116037 +
3 domain predictions
1 GO term
LotjaGi1g1v0660600.1
n.a. Transcription elongation factor (TFIIS) family protein; TAIR: AT5G05140.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b; TrEMBL-Plants: tr|A0A1J7HRT6|A0A1J7HRT6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0660600 LjG1.1_chr1 122075457 122079990 -
3 domain predictions
1 GO term
LotjaGi1g1v0660600.2
n.a. Transcription elongation factor (TFIIS) family protein; TAIR: AT5G05140.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b; TrEMBL-Plants: tr|A0A1J7HRT6|A0A1J7HRT6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0660600 LjG1.1_chr1 122075553 122079990 -
3 domain predictions
1 GO term
LotjaGi2g1v0249800.1
n.a. BAH domain-containing protein; TAIR: AT3G48060.1 BAH and TFIIS domain-containing protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0B2Q028|A0A0B2Q028_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0249800 LjG1.1_chr2 71545828 71553455 -
3 domain predictions
1 GO term
LotjaGi2g1v0338100.1
n.a. Transcription factor IWS1, putative; TAIR: AT1G32130.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4ICK8|IWS1_ARATH Protein IWS1 homolog 1; TrEMBL-Plants: tr|V7CJ79|V7CJ79_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338100 LjG1.1_chr2 81519393 81523539 -
3 domain predictions
1 GO term
LotjaGi2g1v0338100.2
n.a. Transcription factor IWS1, putative; TAIR: AT1G32130.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4ICK8|IWS1_ARATH Protein IWS1 homolog 1; TrEMBL-Plants: tr|V7CJ79|V7CJ79_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338100 LjG1.1_chr2 81520632 81521915 -
3 domain predictions
1 GO term
LotjaGi4g1v0406600.1
n.a. Transcription elongation factor (TFIIS) family protein; TAIR: AT5G09850.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|I1KTE5|I1KTE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0406600 LjG1.1_chr4 78297167 78302737 +
3 domain predictions
1 GO term
LotjaGi5g1v0004800.1
n.a. Transcription elongation factor (TFIIS) family protein, putative; TAIR: AT4G24200.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|B2J717|MURC_NOSP7 UDP-N-acetylmuramate--L-alanine ligase; TrEMBL-Plants: tr|I1MC29|I1MC29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0004800 LjG1.1_chr5 1123087 1128751 +
3 domain predictions
1 GO term