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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0338100 |
| Transcript ID | LotjaGi2g1v0338100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor IWS1, putative; TAIR: AT1G32130.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4ICK8|IWS1_ARATH Protein IWS1 homolog 1; TrEMBL-Plants: tr|V7CJ79|V7CJ79_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81520632..81521915) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAGGAAGGTGAAGAAGATGATGAAATCAATGATCTTTTTAAGATGGGTAAGAAAAAGAAGAAGAACGAAAGAAGTCC TGCAGAGATAGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAAGAGGATGCTGAACTCAATAGAC AGGGGAAGCCTGCTATTAATAAACTCAAGAAGCTGCCTCTTCTTACAGAAGTCCTCTCAAAGTAAGCAGTCGTTTTCCTG CTACATTATGTGTGCAGACTGGTGTTTTCTCAATCTTTTATATTTCTCTTTTCCATATTTGAATAACTTTCCATCCACTA ATTTGCAGGAAACAGCTCCAGCTAGAATTTTTAGATCATGGAGTCCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCC TGATGGAAGCTTGCCAAATATAAACATACGCACTGCAATTTTGAAGATTTTGAATGATGTATCTTGAGTAGATCCATTAT AATATTTTAGATGCATATGCAACTCTCTTTTTCAAAATTATTTTGCATCTTATTCATGTATCTTGTCATGCAGTTTCCTA TAGACCTAGAGCAGATTGACAGAAGAGAACAGCTGAAGAGGAGTGGTCTTGGGAAGGTAGGGTTTCCATTATCCATCTGA ATACATGCTATATTTTAGTAGCACTTAAAACCAAATTCACCCCCCCCCCCCCCCAGCCCCCCGAAAAAAAAGATGGCATG TTTTGGAGGTAATACCTTTGACTGATTTTTACCATCTTAACAGGTAATTATGTTTTTATCAAAGTCTGATGAAGAGATAA ATGTAAATAGGAAACTAGCCAAGGAACTGGTTGATAAATGGGTAAGTAATGCATGACTAAACCCTTGTTCCATCTTAATC TTTTATCTTCCTGTCAAAGCTGTTCAATTTTATTCTAGTTGAGTGATCTTCTCTGTTGTGTTTTACTGTTACTTGAAATC TAGGATTCATGAAAAACACTATTGTATGTATTTTGTTTCATGAATTCATTTTAAGCAATAACTTAACATTTTGTTAACAC TGTAATTGCAGAGCCGACCTATATTTAATAAGAGTACACGGTTTGAAGACATGCGAAATATTGAGGATGAGAGGGCTCCT TTCAGGAGGCCATCAGTCAAAAAGTACTCGTATCATTTTTTTCCATTGCTGCTCCTGCAGTATTATAAGTCCTTATTGCA ACATGTTGAATTTGTATAATTTTGCTGAACTATTTTGTTGAACTCTTACAGGCCGGCAAATAAAGCTGCAGGAATGCAAT CTAG
CDS sequence (LotjaGi2g1v0338100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGAAAAAGAAGAAGAACGAAAGAAGTCCTGCAGAGATAGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGA GGTTACAGCTGAAGAGGATGCTGAACTCAATAGACAGGGGAAGCCTGCTATTAATAAACTCAAGAAGCTGCCTCTTCTTA CGAAACAGCTCCAGCTAGAATTTTTAGATCATGGAGTCCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCCTGATGGA AGCTTGCCAAATATAAACATACGCACTGCAATTTTGAAGATTTTGAATGATTTTCCTATAGACCTAGAGCAGATTGACAG AAGAGAACAGCTGAAGAGGAGTGGTCTTGGGAAGGTAATTATGTTTTTATCAAAGTCTGATGAAGAGATAAATGTAAATA GGAAACTAGCCAAGGAACTGGTTGATAAATGGAGCCGACCTATATTTAATAAGAGTACACGGTTTGAAGACATGCGAAAT ATTGAGGATGAGAGGGCTCCTTTCAGGAGGCCATCAGCCGGCAAATAA
Protein sequence (LotjaGi2g1v0338100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTKQLQLEFLDHGVLTLLKNWLEPLPDG SLPNINIRTAILKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRN IEDERAPFRRPSAGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 174 | 173 | 3.6E-103 | – | |
| PANTHER | 2 | 174 | 173 | 3.6E-103 | – | |
| Gene3D | 11 | 154 | 144 | 5.9E-50 | ||
| Coils | 19 | 39 | 21 | - | – | |
| SUPERFAMILY | 62 | 151 | 90 | 4.58E-6 | ||
| ProSiteProfiles | 68 | 151 | 84 | 22.284 | ||
| Pfam | 93 | 148 | 56 | 2.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0338100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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