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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0338600 |
| Transcript ID | LotjaGi2g1v0338600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920; TrEMBL-Plants: tr|I1J4M9|I1J4M9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0338600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81548926..81551334) extracted from Lotus japonicus Gifu genome v1.2.
GCTCTCTGAAATTTCATGGATGACATTCAAATCCTCTATTCTGAAAAATTCACCTTTTCTTCTTTGATAAAAAACTCAAC AAAAATCAAATATTTTCTCCAACCCCATTGCCATTTCACGAACTGTGATCACCACACCCCTCAGCTTCATACAAACTGTT AAACTCGGCAATCTGATCAAATTGGTTTGCCTCATGGATCATAGAGTTCACTTTTTTCTGGTGCATAACTATCTCTTCTC AGTTTCTATCTTCACATTTTGACTTTATTCTTATATTGAAATGATTGTTCACTTGTATCTTATGGACTAAATAATGGGCT GCAAAATATTGCTAAGCTTTGATTAGCAATTTAGCATGCTGGTTGGTTATATAACATGGTGTGAATGAAAGGATGACAAG GACAACTGTCCTTAGCCAAACCCATCTTTTGTCACTACCAAGTACTCCACCCCAGTGCTCTGAGTTGAGTACCAGGTTCA ATGAGCAGGGATGGTATCCTTTGTTGAAGAGATGCAAGAGCATGGAAGAGTTTAAGCAAGTTCATGCCCATGTTCTGAAA TTGGGCTTTTTTTGTGATTCTTTTTGTGGGAGCAATCTTGTTGCCACTTGTGCTCTAGCAAAATGGGGCAGCATGGAGTA TGCTTGTTCAATCTTCAGGCAGATTGAGGAACCTGGTAGTTTTGAGTACAACACCATGATTAGAGGGAATGTGAATAACA TGAATCTAGAAGAAGTTTTACTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCAAACAATTTTACATACCCTTTT CTTCTCAAGGCATGTTCTCTGTTAGGTGGTGTCAAGGAAGGAATTCAAATTCATGGGCATGTTTTTAAGGCAGGTGTTGG AGATGATATCTTTGTCCAAAATGGTTTGATCAGCATGTATGGCAAGTGTGGGGCAATCAAGCATGCCTGTGATGTGTTTG AGAAAATGGATGAAAAGAGTGTAGCTTCATGGAGTGCTATTATAGGTGCTCATGCTTGTGCTGAAATGTGGCATCAGTGC TTGATGCTTCTTGGGGACATGAGCAGGGAAGGACACTGGAGGGCTGAAGAAAGCACACTAGTCAGTGTGCTCTCTGCTTG CATTCATTTGGGGTCTCCTAATTTAGGAAGGTGCATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTG TGAAAACTTCCTTAATTGACATGTATGTCAAAAGTGGATGCATTGAGAAAGGTGTCTGTGTTTTCCAAAACATGGCTGAG AAGAATAGATACTCTTACACTGTAATGATCTCAGGGCTTGCCATTCATGGTCACGGCACCGAAGCTCTTCAAGTTTTCTC AGAAATGCTGGAAGAAGGTTTGGCACCGGATGATGTGGTCTATGTAGGTGTGTTAAGTGCTTGCAGTCATGCTGGTCTTG TCAATGAGGGCCTGCAATGTTTCAAAAACATGCAATTTGAGCACAAGATCAAACCAACAGTTCAGCACTATGGTTGCATG GTGGATCTTTTGGGAAGAGCTGGGATGCTCAGGGAAGCCTATGGCCTCATAAAGAGCATGCCAATTAAGCCTAATGATGT GGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCATCTGAACTTGGAAATAGGGGAAATTGCAGCTGAAAAACTTTTCA TGCTTAATCCAAACAACCCTGGTGACTATTTGGTGCTAGCAAATATGTATGCAAGAGCTCATAAGTGGAATGATGTGGCC AGAATCAGAAGAGAAATGGCTGATAAACACTTGGTACAAACACCCGGGTTTAGCATGGTTGAAGCAGAGAGGAAGGTCTA CAAGTTTGTATCGCAAGACAGGTCTCAACCCGAATTTGACACCATCTACAATATGATTCACCAAATGGAATGGCAGTTGA AATTTGAAGGCTATAAACCAGATACATCACAGGTGCTGCTAGATGTAGATGAAGAAGAAAAGAGGGAGAGGCTGAAACAT CATAGTCAGAAGCTAGCAATTGCTTTTACACTGATACATACATCTGAGGGATCTCCTATAAGAATATCAAGAAATCTTAG GATGTGTAGTGATTGTCATACATACACTAAATTCATTTCCAAGATCTGTGAACGAGAGATTACTGTAAGAGACCGTTTTC GGTTCCACCATTTTAAAGATGGAGCTTGCTCATGTAAAGATTATTGGTGAATTTCATTCTATTTAGATGCTTAAGGGGCT CTTTTAGAACAGAGAGGGGTAGTGTTTTTCATGTTTCATTGACATTTCCTACTCATAATTGTTATTGTAGTAAATAGACG ATCAATTAACACGAAAATGGGCAGTGTGTTACGGATCAAGAACTGTCTACAAAATGTGTCCAAATTAAATTAAAAGAACT AGATTGGGG
CDS sequence (LotjaGi2g1v0338600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAGGACAACTGTCCTTAGCCAAACCCATCTTTTGTCACTACCAAGTACTCCACCCCAGTGCTCTGAGTTGAGTAC CAGGTTCAATGAGCAGGGATGGTATCCTTTGTTGAAGAGATGCAAGAGCATGGAAGAGTTTAAGCAAGTTCATGCCCATG TTCTGAAATTGGGCTTTTTTTGTGATTCTTTTTGTGGGAGCAATCTTGTTGCCACTTGTGCTCTAGCAAAATGGGGCAGC ATGGAGTATGCTTGTTCAATCTTCAGGCAGATTGAGGAACCTGGTAGTTTTGAGTACAACACCATGATTAGAGGGAATGT GAATAACATGAATCTAGAAGAAGTTTTACTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCAAACAATTTTACAT ACCCTTTTCTTCTCAAGGCATGTTCTCTGTTAGGTGGTGTCAAGGAAGGAATTCAAATTCATGGGCATGTTTTTAAGGCA GGTGTTGGAGATGATATCTTTGTCCAAAATGGTTTGATCAGCATGTATGGCAAGTGTGGGGCAATCAAGCATGCCTGTGA TGTGTTTGAGAAAATGGATGAAAAGAGTGTAGCTTCATGGAGTGCTATTATAGGTGCTCATGCTTGTGCTGAAATGTGGC ATCAGTGCTTGATGCTTCTTGGGGACATGAGCAGGGAAGGACACTGGAGGGCTGAAGAAAGCACACTAGTCAGTGTGCTC TCTGCTTGCATTCATTTGGGGTCTCCTAATTTAGGAAGGTGCATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAA TGTTGTTGTGAAAACTTCCTTAATTGACATGTATGTCAAAAGTGGATGCATTGAGAAAGGTGTCTGTGTTTTCCAAAACA TGGCTGAGAAGAATAGATACTCTTACACTGTAATGATCTCAGGGCTTGCCATTCATGGTCACGGCACCGAAGCTCTTCAA GTTTTCTCAGAAATGCTGGAAGAAGGTTTGGCACCGGATGATGTGGTCTATGTAGGTGTGTTAAGTGCTTGCAGTCATGC TGGTCTTGTCAATGAGGGCCTGCAATGTTTCAAAAACATGCAATTTGAGCACAAGATCAAACCAACAGTTCAGCACTATG GTTGCATGGTGGATCTTTTGGGAAGAGCTGGGATGCTCAGGGAAGCCTATGGCCTCATAAAGAGCATGCCAATTAAGCCT AATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCATCTGAACTTGGAAATAGGGGAAATTGCAGCTGAAAA ACTTTTCATGCTTAATCCAAACAACCCTGGTGACTATTTGGTGCTAGCAAATATGTATGCAAGAGCTCATAAGTGGAATG ATGTGGCCAGAATCAGAAGAGAAATGGCTGATAAACACTTGGTACAAACACCCGGGTTTAGCATGGTTGAAGCAGAGAGG AAGGTCTACAAGTTTGTATCGCAAGACAGGTCTCAACCCGAATTTGACACCATCTACAATATGATTCACCAAATGGAATG GCAGTTGAAATTTGAAGGCTATAAACCAGATACATCACAGGTGCTGCTAGATGTAGATGAAGAAGAAAAGAGGGAGAGGC TGAAACATCATAGTCAGAAGCTAGCAATTGCTTTTACACTGATACATACATCTGAGGGATCTCCTATAAGAATATCAAGA AATCTTAGGATGTGTAGTGATTGTCATACATACACTAAATTCATTTCCAAGATCTGTGAACGAGAGATTACTGTAAGAGA CCGTTTTCGGTTCCACCATTTTAAAGATGGAGCTTGCTCATGTAAAGATTATTGGTGA
Protein sequence (LotjaGi2g1v0338600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRTTVLSQTHLLSLPSTPPQCSELSTRFNEQGWYPLLKRCKSMEEFKQVHAHVLKLGFFCDSFCGSNLVATCALAKWGS MEYACSIFRQIEEPGSFEYNTMIRGNVNNMNLEEVLLLYVEMLERGIEPNNFTYPFLLKACSLLGGVKEGIQIHGHVFKA GVGDDIFVQNGLISMYGKCGAIKHACDVFEKMDEKSVASWSAIIGAHACAEMWHQCLMLLGDMSREGHWRAEESTLVSVL SACIHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKSGCIEKGVCVFQNMAEKNRYSYTVMISGLAIHGHGTEALQ VFSEMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFKNMQFEHKIKPTVQHYGCMVDLLGRAGMLREAYGLIKSMPIKP NDVVWRSLLSACKVHLNLEIGEIAAEKLFMLNPNNPGDYLVLANMYARAHKWNDVARIRREMADKHLVQTPGFSMVEAER KVYKFVSQDRSQPEFDTIYNMIHQMEWQLKFEGYKPDTSQVLLDVDEEEKRERLKHHSQKLAIAFTLIHTSEGSPIRISR NLRMCSDCHTYTKFISKICEREITVRDRFRFHHFKDGACSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 24 | 142 | 119 | 6.8E-14 | ||
| PANTHER | 37 | 154 | 118 | 1.5E-87 | – | |
| ProSiteProfiles | 95 | 129 | 35 | 10.172 | ||
| Pfam | 96 | 141 | 46 | 4.8E-10 | ||
| TIGRFAM | 99 | 130 | 32 | 6.4E-6 | ||
| ProSiteProfiles | 130 | 164 | 35 | 6.708 | ||
| Gene3D | 145 | 251 | 107 | 7.8E-14 | ||
| PANTHER | 152 | 253 | 102 | 1.5E-87 | – | |
| ProSiteProfiles | 165 | 199 | 35 | 9.164 | ||
| Pfam | 170 | 196 | 27 | 0.0027 | ||
| Pfam | 199 | 227 | 29 | 0.042 | ||
| PANTHER | 251 | 462 | 212 | 1.5E-87 | – | |
| Gene3D | 252 | 492 | 241 | 1.2E-38 | ||
| ProSiteProfiles | 267 | 297 | 31 | 7.739 | ||
| TIGRFAM | 272 | 297 | 26 | 0.0019 | ||
| ProSiteProfiles | 298 | 332 | 35 | 11.981 | ||
| Pfam | 298 | 345 | 48 | 8.1E-9 | ||
| TIGRFAM | 300 | 333 | 34 | 4.5E-8 | ||
| ProSiteProfiles | 333 | 368 | 36 | 7.596 | ||
| TIGRFAM | 335 | 369 | 35 | 0.001 | ||
| ProSiteProfiles | 369 | 399 | 31 | 7.092 | ||
| Pfam | 373 | 396 | 24 | 0.015 | ||
| ProSiteProfiles | 435 | 469 | 35 | 7.114 | ||
| Pfam | 471 | 595 | 125 | 4.8E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0338600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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