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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0340300 |
| Transcript ID | LotjaGi2g1v0340300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter protein; TAIR: AT3G12750.1 zinc transporter 1 precursor; Swiss-Prot: sp|O81123|ZIP1_ARATH Zinc transporter 1; TrEMBL-Plants: tr|I3TA72|I3TA72_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0340300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81727363..81729357) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAGTTGAATCTTATCAACCCATGTACACAGAGAGGTTACTCTGTTTATAAATAACATTGTAAATCCCTTGCTCCTTG CACCTTTATCTCACTCTATTTTCTCAGTTTTTTTATCATGGACTGGTTTAAGAGACAAAGCCAATTTTTCACTTTTTCTC TCATCATTTTCCTTGTACTCCCAACTTTAATTGTGGCTGAATGCACATGTGACCCTGAAGATCAAGAAGAAAGGGACAAA ACAAAAGCTCTTAGATACAAGATAGCAGCTTTAGTATCAATACTAGTAGCCAGTGCAATTGGTGTTTCCATTCCACTACT TGGCAAAGCGATACCTTCTCTAAGTCCAGAGAAAGATATCTTCTTTATCATTAAGGCTTTTGCAGCAGGTGTGATATTGT CCACGGGTTTCATTCACGTGCTTCCTGATGCCTTTGAGAACCTCACTTCACCCCGTCTGAATGAGCATCCGTGGGGCGAT TTTCCGTTCACCGGATTCGTGGCTATGTGCACCGCTATGGGAACACTCATGATTGAGACTTATGCTACTGCTTATTTCCA GAATCAACAAGTAAAGGGAGCTTTGGTTGAGGCTACTGATGTGGAAAATGAATCAGGACATGAAGGGCATGTGCATCCTC ACACTCACCCAACACATGTTCATGCACATGGCCATGTTTCTACAAACCAGTCTACTGAACTTCTTCGCAATAGGGTGGTA TCACAGGTAATCGAGTGATTATATGTGTATATATATATACACTTTTTAGCCGACAGATTATATATCATGCTAAATGATGA ATTTATTAAAGTGGAGCTTCATGTGCTCAATTTGAGAATCTGATTCACGTTGATTGTGATTGTTGGTTTTGATTTCATTG TAGGTGTTGGAACTGGGAATTGTTGTTCATTCTGTTATCATAGGGATTTCTTTGGGAGCCTCCGAGACTCCAAAAACAAT AAAACCCCTTGTAGCTGCTTTGACTTTTCATCAATTCTTTGAGGGTATGGGGCTTGGAAGTTGTATAACTCAGGTAACAC TTTGTCTACCATGCAATTGGTAAAAATCTGGTTCAATTATATAAGTAAAACATGATCAATGAATGAACCAGCTGTTTTGA CTTGATTAATCATATAATTACCCCTATCCAAAATTAGAAGTTCATATGCATATATATGATATAATATACGATTGAAAGTT TTGGTCAAAACTGGCAGACTTTTCAGATTTTTTATGAAGTTTCAAAGCATAAAAGTTGGGTGAAGTGAAGTATATGTCAT CAAATTTGTACTACTAATACCAATCTTACTTTTCTGACTTTTTTTACATTAATTTTCCGTGGACATCTTACTCCTCTAAG ATATTTTATGAACTGTTTGTAGGAGTTATATGTGCGTTAGAATTTCAAACTATACATGTGTGCAACTTGAGTGTGAACTA AAGATCACTGTACATTGTTTTTTTGACTTTTGGAAGTGCAATTATTAATTGCAGGCAAAATTCGAAAGGATGTCTGTTAC AATCATGGGATTGTTCTTTGCTTTAACTACTCCTGTGGGGATTGCAATTGGCCTAGTCATCACTAATGGTTATGATGAGA ATAGTCCAACTGCCCTTATTGTTGAAGGAATCTTCAATGCAGCTTCAGCTGGGATATTAATCTATATGGCACTTGTAGAT CTTCTTGCTGTTGATTTCATGAGTCCAAGGATGCAAAAAAGTGGTAGGCTTCGATTAGGGTCCAATTTATCTCTTTTGCT AGGAGCGGGTAGCATGTCTCTTATTGCCAAATGGGCTTAGAGCCAAGTTTGTATGCTATTTTTCTTGCTTTTTTTTTAGA TAAGTCATAAAAGATATATTGAAATGAAGTATAAGGGGTGCTTCAACCCAATGCTAAATTGTTTTGGTTTTCAATTTTGT GCTGCTGCATACTTCATGTGATTATTTCGAAGTCTAATTATATGTAGAGTTCTTTTAGGATGGACAATGTTGAAA
CDS sequence (LotjaGi2g1v0340300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGGTTTAAGAGACAAAGCCAATTTTTCACTTTTTCTCTCATCATTTTCCTTGTACTCCCAACTTTAATTGTGGC TGAATGCACATGTGACCCTGAAGATCAAGAAGAAAGGGACAAAACAAAAGCTCTTAGATACAAGATAGCAGCTTTAGTAT CAATACTAGTAGCCAGTGCAATTGGTGTTTCCATTCCACTACTTGGCAAAGCGATACCTTCTCTAAGTCCAGAGAAAGAT ATCTTCTTTATCATTAAGGCTTTTGCAGCAGGTGTGATATTGTCCACGGGTTTCATTCACGTGCTTCCTGATGCCTTTGA GAACCTCACTTCACCCCGTCTGAATGAGCATCCGTGGGGCGATTTTCCGTTCACCGGATTCGTGGCTATGTGCACCGCTA TGGGAACACTCATGATTGAGACTTATGCTACTGCTTATTTCCAGAATCAACAAGTAAAGGGAGCTTTGGTTGAGGCTACT GATGTGGAAAATGAATCAGGACATGAAGGGCATGTGCATCCTCACACTCACCCAACACATGTTCATGCACATGGCCATGT TTCTACAAACCAGTCTACTGAACTTCTTCGCAATAGGGTGGTATCACAGGTGTTGGAACTGGGAATTGTTGTTCATTCTG TTATCATAGGGATTTCTTTGGGAGCCTCCGAGACTCCAAAAACAATAAAACCCCTTGTAGCTGCTTTGACTTTTCATCAA TTCTTTGAGGGTATGGGGCTTGGAAGTTGTATAACTCAGGCAAAATTCGAAAGGATGTCTGTTACAATCATGGGATTGTT CTTTGCTTTAACTACTCCTGTGGGGATTGCAATTGGCCTAGTCATCACTAATGGTTATGATGAGAATAGTCCAACTGCCC TTATTGTTGAAGGAATCTTCAATGCAGCTTCAGCTGGGATATTAATCTATATGGCACTTGTAGATCTTCTTGCTGTTGAT TTCATGAGTCCAAGGATGCAAAAAAGTGGTAGGCTTCGATTAGGGTCCAATTTATCTCTTTTGCTAGGAGCGGGTAGCAT GTCTCTTATTGCCAAATGGGCTTAG
Protein sequence (LotjaGi2g1v0340300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWFKRQSQFFTFSLIIFLVLPTLIVAECTCDPEDQEERDKTKALRYKIAALVSILVASAIGVSIPLLGKAIPSLSPEKD IFFIIKAFAAGVILSTGFIHVLPDAFENLTSPRLNEHPWGDFPFTGFVAMCTAMGTLMIETYATAYFQNQQVKGALVEAT DVENESGHEGHVHPHTHPTHVHAHGHVSTNQSTELLRNRVVSQVLELGIVVHSVIIGISLGASETPKTIKPLVAALTFHQ FFEGMGLGSCITQAKFERMSVTIMGLFFALTTPVGIAIGLVITNGYDENSPTALIVEGIFNAASAGILIYMALVDLLAVD FMSPRMQKSGRLRLGSNLSLLLGAGSMSLIAKWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 22 | 354 | 333 | 1.3E-168 | – | |
| Phobius | 22 | 27 | 6 | - | – | |
| PANTHER | 22 | 354 | 333 | 1.3E-168 | – | |
| Phobius | 28 | 50 | 23 | - | – | |
| TIGRFAM | 32 | 354 | 323 | 2.2E-137 | ||
| Pfam | 47 | 351 | 305 | 7.3E-73 | ||
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 51 | 69 | 19 | - | – | |
| Phobius | 70 | 80 | 11 | - | – | |
| Phobius | 81 | 102 | 22 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 103 | 121 | 19 | - | – | |
| Phobius | 122 | 143 | 22 | - | – | |
| Phobius | 144 | 260 | 117 | - | – | |
| MobiDBLite | 166 | 188 | 23 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 261 | 282 | 22 | - | – | |
| Phobius | 283 | 301 | 19 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 302 | 322 | 21 | - | – | |
| Phobius | 323 | 333 | 11 | - | – | |
| Phobius | 334 | 353 | 20 | - | – | |
| TMHMM | 334 | 351 | 18 | - | – | |
| Phobius | 354 | 354 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi2g1v0340300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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