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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0342300 |
| Transcript ID | LotjaGi2g1v0342300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor; TAIR: AT4G37740.1 growth-regulating factor 2; Swiss-Prot: sp|Q6AWY6|GRF3_ORYSJ Growth-regulating factor 3; TrEMBL-Plants: tr|K7K3Y3|K7K3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0342300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81950825..81956540) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGCTTCTAGGCTCTAGCTACCCAGATCAGATTTAGAAAAAATAATAAAAAGAAAGAAATAAAGTTGAAGTTGAAAAC CACTGTTGAGGGTGCATTTAGTTTAATGTAGAGAGAGCATCCATTTCCATTAATCCCTACCAATACCCATGGCTGAACTG GTTTTCCCCGAGGCAGTAACCGCCCTCTTCCTCCATCACCTTCACTTCTCTCTCTCTCTCTAAATGCCAGTTTCTCTCTC CTCGATTCAACCCTCTTTCCTCAAACCCCAATCCCAAATGATGAGCGTTCCTCCGCCGCCGGTGATGTGGCCGCCGCCGT TCACGGTGTCGCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCTGTCCCTCCC GACCTCCTCGTACCCATTCGGAAAAGTCTTCAGTTGATGTCTCATCCTCACTCTTCTCGTAAGCCACCACCACCCCTTCA TCATCAACGTTTACCTCTTTTTTTCCATCTGGGTATGCTAAAGTTTGAATCTTTTTGCAGTTGGGTATTATGGGAAGAAG ATTGACCCAGAACCAGGAAGGTGCAGGAGAACCGATGGCAAGAAATGGAGGTGTGCAAAGGATGCTCACCCTGACTCCAA ATACTGTGACCGCCACATGATACGTCGCCGGTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTCAACCTTCTTCTTCTT CTTCTTCTTCTTCACAACTTGCTGCTTCCACTGCTGGGTCTGGAAGCACTGCAAAAACTGCATCTGCAGCTGTAACCACT TTCCAAAACAACCTCCCCTTGCACACCAATGGTGCCCGTGAAGGTTTCAGCTTCACCCTTGGGAACTCTACCTCCCAACT TCACATGGACACTTCCAAGAAACCTTACAGGTAGGTATTGTTTTCATTTCATCCATTAACTAACTGATTTATTCATTGAT TGAACCGTTAGTGGTGTGTATGTTTTTTTGTTTATTATGTTCTAATAGTAGTTGTTTGTATGGTTCCTATGTGTTTATTA GGGTGTTTTAACTTTTGGGTTGGCGAAATGATTGCCATAATTTCTGGTGGAGTGTTATATTCTTTCGCCTTCCGCAATAG ATGGTGTGTTATGATGTTATGTAGCAAATATGGTTGCTGTGATGGTAAGTTACCTAACATGTGGATCCTTATCATGTGTG GGATATGAGTAAGGTGGAAGTCATCTGATCATTATTTTTCAAATTAGATTTGCTTTTCATTCCATTTGATTTCAATTTGT TTTGAGTTTGAAATAATGAAATGCTAATTGTCTATGCGACTATGCCCTTTAGAAATGGCACATGAGTTTGGCTTGATTTG GTAACATTATTTCTGGATTGGATTTATTTAGGCGTTGCAGCGTATCATCGGAAATTTATTTATCTCTTGATATTTTCTTT TGTAACTTGAATCCCCTCATGCTGTTTATTTGAGATCACAGCTTTGCACCCCAGGTTCACTTCCAAGATTTTGTTGAAAT CCTTTTGACATTTATTTTAAAGCATATACAGTGCATGATCTGCCTTGTCGGAGGGTGAACTGAAGTGTATGGGAATGATT TAATAAAATTGGAAGGGATTTAACGATGAAGTAATAGCAGGACAATTAATGTTTGTGAGGTACAGTTAAAGAAATTAACT AGAGGTAACTTCTTGTTGGTTGAGTGATGTATAGTTGACAATTATCCAGAAATGGTGGTTCAAAGCTTTGAACTGGTGGT TGGGATCCGTTTTGTAGGAAAATTTGAAACATGTTTATTGCTTTTTAGTTGTCTGGTACTCTGGTGATATAATTTCTCTA TTCTGGGCCATCAGTGAGCTGTCATGTAATCTTTCATTTCCTCAACTGTCCTTCTTTTTCCTCTCATTCTCGTTTTCTTC CGTTACTTTGAGATAGAGCTCACTGGACACTACTTTTGTAGCCTTGTCAGTGTTTTTTTTTGGGTGTGCTGGCAGAAGCT GGTATTGATCCTGTGTGGATGACTAAGAAAATCATGCACTGGAAAGGATATTGTAAAAGTAAGATAAGTGGAGCAAACTA GAGCCAGGGGGAGCAAGAGTTGTATTTTAGTAGTTTAAATGGATATTTTTAACTTTTTATAAGGGACCTTTGGGATTTGA GGTATGTAATGGATATAAAACTTGTATTTATGACAAAGGAATGAGTGAGCATCATTATTGCCTTATGCAGAATGTATTAG TAGTTTTCTTCTTTAAAGAGCCTAATTGGTTGCTTCAATTCATAGCTTTAGTAACCCCTGCCCTGCCTCTAACCATTTGC ATCCATCCATAACTTTTCATAAGTTTTCTAAAATATTGTTAAAAGTTGTTTCTAATTTCCTATTATACATAATTGAATTA AGTGTAGCATCATGATGTTTACTTAACACTCCATAGGTTTGAACTGACCAACGAAGCAGAGGAGCACAGCCTCTTACAGA AAGATCTGGGAAGTGTGAAGTATCAAGGTTATGACTTTACCTCAGATGGTATGTGGTCTCACATGCATCAGATTCCGTCA AACACTATTTCAGAATCAAGGAGTGGTTCTGCTATAGTTGGCAACTGCTTCCAACAGCGAACAACCCGAGATGCTGAACT GTTGAACCTTGACACTGCAAGGTCCAAGGAACTTGCATTTAGTGGCCAGGTATGTTCAGCAGGGCGCTTGAAACAGGAAT ATCAGTCCCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAGGATTTAGGTTCTTCTGCCACTGCGTATAGGCCCAAC AAGGATTTCAACTGCAACCCAGATATCAATGCTGATTCAAGTGGTTCTTTATGAGGCTTTCAAGGAGTTTTCTGATTTTA ATTTTATCCCACGATATCTCAGTATCCACCTGGTCCCCCCCCCCCCCACCCTTTGTTTTCCCCCCAACCAGTGAAAATAT AAATCCTCAGGCAGTGCTAAATTTATCACCCGTAGCGTTCAGATATCTGAGGAATCATGGTTTAATTTTCAAGCTTCAAT GTGTTGTTCTGTTATATATCTTATATACTTGGAAGAGTTATGCTTTCTTCACCCTTAAACGTGTAATATTTGACTGTGGT TTGGTTTCTCTTAATTGTAGCGTTCAGTTTGACTCTTGTCTTCTATGATTTAAGTCCCATGATTGTTAGACACATGGTGC TATTCTCAGGCAGCAAGGTTAATTATTATTGCATGAATGGCTAAACATTCTTTAACATGGCATTTTTGAGGTGTGATCAA CCATGCTCATGTTATGGAATTTTAAAAGTCAGGTGGTGATATCAGGTGACATGATGGTGCATGTTTAGTAACCCTTTACA ATTACTTATTCTGAAGTCAGAATTAATTCTGACCAGAAACTTCTATGAGTAGCTTCTGAGTTTTCGAATTGATTCTAATG CAAGAAAAACTAATCCGAACATGCTATATCTCTCCTAAAGTAAGGGGAAGAGAGGCAAATGGTGCTTTGTTAGTTTGTTG CATTGAATTTGAATAGTATTGCAGTGAAGTGGTGCTTTCAAAGCTCCTCTATGCACAGGGGTTATAAATGAGGAGTGCAG TAGTTGTTGGCTTATTAATGTTTCAATTTGAAGGAGAGCATTTCGAGGTATGAAGGCGGTGTTGGTGTTTCATAATGAGT TTTTCGAGCTCAAGGTTTTTTCTTGTTCTTTTCCCTTATTTTGTAGTCTTAACTCATGCGTCTTACTCCATTTTTACCCC TTGAGTTAAGTTTTATTATGGAAGTAAGGTAATGGAATCACCTTATACAAAGATCATCTGTTATAGCCCGTTTTTTTATT ATTTGTCCAAAGTAGAAATTATAACTATCTTTTAAAATTGTTTTTGTCGTTTGTAATAAAAAATTACTTATTTTACATGA AAATAAAATACATAACAAACAAAAATTATTTAAAAAAACTTACAAAGGGTGATTCTAAAATGTGTAATGTTGATCTTGTG ATCGATGCTAATTGTTAGCGTAGGTTTAGCCGATTCTAAAGTGACACTACATGCTTGAGATGACCAAGGCTATTGCCCTT TCATTAGCACACTCTAAGTTGTATAAATAAAATCTATAATTCATGTTATGCACACAATAATCAGTAAAATATTTATTTCT TTAATTAGTCTTTTCATTTTACTAAAGAGGATGGGAGATGACTACACTACAGGTACATTTAAATAACTTTTAAATTGTAA AAAATTAATGTGCATATTCCTACCATTTTCTTTTTCTTTTCTAAGTTTTTAATTTTTATATTCGAGACGCAAAAAAATGT CATTATTTGAGAACAATACGTCGACGTTTCAAGATCTAAAGATGCAGCAGGCAAAATTCGGAAGTGGCTGAATATCTATC TAATTCTCACAACCTTATCCTAACTTGTTCCTTTCTCTTTTCTGTGTTTCTACTTGACTTTCTATTTTCTACTCAAAACT CAAACACCATGTGTGGTTCTGCTGATCCACCTATGTAATCTTCAACCATCATCAACACCATGGCTGCAACTGCCCCCACA CCATTTCTTCACACGGTTCTCTCTCTTTTTCTGTCTCCATTATTGGACTAATTATAATTATATATCTTGTCAAATATTCT AAATGTGATTCTAATTGCTAGTATGTTGTTTCACTGCAGCAAGTTAGGAACAATAACATCTTGACACTCACAAAGATCAA TTATGTCAGTGGAAATGTGAATTCTCAATTTCATCATCACATTCACTTCTCACACCTAGCACTTGTAAGAGCAACCAGGG GCCCCAAGGGGTTTGGGCCTGCCCCAAACAAAAGGAAGAAACCCAAGAAGCAGCTGAGAAAAGACAAAGAAGAAGAAGAT GATGATGATGATGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAGAGGGAGAAGGGAGTGATTCCTGAAGTGGTGAC AAACAGGATGATGAGCAGGATGGCATTCTCAGTGGGGATACCATTAGGTATTGGGCTTTTGTTTTTTCCATTCTTTTACT ATCTCAAGGTTGGGTTGAAAATTGATGTGCCCACTTGGGTGCCCTTCATTGTGTCCTTCATCTTCTATGGGTCTGCTTTG TTGGGGGTGAGTTATGGGATTGTGTCCACTAGTTGGGATCCATTGAGGGAAGGGTCCCTTTTGGGCTGGAATGAGGCCCA GAAGAATTGGCCTGTTTTTTGGCAATCCCTTCGGGGTGAATCTCGCAAGGAATAGCCTATAGACTTTAGCTTATATATAA TTTATTTTTGACCATGACATTGGCTTGATAATGTAGCTTTCATCTTAAACTAGTTTGAGCGTGTTTCTTTCTCCATTTAT ATCAACATAAGAAATAATTTTACATATGCAGGAAGCAGAATTTTGTAGTATATTCAATAGAAATTTAATCAATTTATTAT TTATATTGCTCAAAATGTTTAAGGAAACATATTGTCTCAAAATCTATTGGTGTAGATTTGTACTTGTTATGTATTATGTA TAGGCAAGGCTTGGTTGGGTTGATAATTTATGGGTTGACAAAAAATCCTATAAAGGGTGATCGTAGCCCAAAAATTTACA TACTTATTGAATATATTTAGATTGAGTTAAAATATAATAAAATGCTTTTTTTTTTTGTTACAACTGGAAAAGAAAAGAAA CAACAAACTAAAAGACTACATCCTGACAAAGCAAGG
CDS sequence (LotjaGi2g1v0342300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGTTTCTCTCTCCTCGATTCAACCCTCTTTCCTCAAACCCCAATCCCAAATGATGAGCGTTCCTCCGCCGCCGGT GATGTGGCCGCCGCCGTTCACGGTGTCGCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTCAAGGCGG GTCTCTCTGTCCCTCCCGACCTCCTCGTACCCATTCGGAAAAGTCTTCAGTTGATGTCTCATCCTCACTCTTCTCTTGGG TATTATGGGAAGAAGATTGACCCAGAACCAGGAAGGTGCAGGAGAACCGATGGCAAGAAATGGAGGTGTGCAAAGGATGC TCACCCTGACTCCAAATACTGTGACCGCCACATGATACGTCGCCGGTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTC AACCTTCTTCTTCTTCTTCTTCTTCTTCACAACTTGCTGCTTCCACTGCTGGGTCTGGAAGCACTGCAAAAACTGCATCT GCAGCTGTAACCACTTTCCAAAACAACCTCCCCTTGCACACCAATGGTGCCCGTGAAGGTTTCAGCTTCACCCTTGGGAA CTCTACCTCCCAACTTCACATGGACACTTCCAAGAAACCTTACAGGTTTGAACTGACCAACGAAGCAGAGGAGCACAGCC TCTTACAGAAAGATCTGGGAAGTGTGAAGTATCAAGGTTATGACTTTACCTCAGATGGTATGTGGTCTCACATGCATCAG ATTCCGTCAAACACTATTTCAGAATCAAGGAGTGGTTCTGCTATAGTTGGCAACTGCTTCCAACAGCGAACAACCCGAGA TGCTGAACTGTTGAACCTTGACACTGCAAGGTCCAAGGAACTTGCATTTAGTGGCCAGGTATGTTCAGCAGGGCGCTTGA AACAGGAATATCAGTCCCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAGGATTTAGGTTCTTCTGCCACTGCGTAT AGGCCCAACAAGGATTTCAACTGCAACCCAGATATCAATGCTGATTCAAGTGGTTCTTTATGA
Protein sequence (LotjaGi2g1v0342300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVSLSSIQPSFLKPQSQMMSVPPPPVMWPPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPHSSLG YYGKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVESQPQPSSSSSSSSQLAASTAGSGSTAKTAS AAVTTFQNNLPLHTNGAREGFSFTLGNSTSQLHMDTSKKPYRFELTNEAEEHSLLQKDLGSVKYQGYDFTSDGMWSHMHQ IPSNTISESRSGSAIVGNCFQQRTTRDAELLNLDTARSKELAFSGQVCSAGRLKQEYQSPQSLFSDWHWKKDLGSSATAY RPNKDFNCNPDINADSSGSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 333 | 304 | 6.9E-121 | ||
| PANTHER | 30 | 333 | 304 | 6.9E-121 | – | |
| SMART | 31 | 67 | 37 | 2.2E-10 | ||
| Pfam | 32 | 66 | 35 | 6.7E-14 | ||
| ProSiteProfiles | 32 | 67 | 36 | 22.637 | ||
| MobiDBLite | 82 | 109 | 28 | - | – | |
| ProSiteProfiles | 87 | 131 | 45 | 22.663 | ||
| MobiDBLite | 87 | 109 | 23 | - | – | |
| Pfam | 88 | 130 | 43 | 5.9E-19 | ||
| MobiDBLite | 124 | 152 | 29 | - | – | |
| MobiDBLite | 129 | 152 | 24 | - | – | |
| ProSitePatterns | 281 | 292 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0342300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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