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LotjaGi2g1v0343600.1

Overview

Field Value
Gene ID LotjaGi2g1v0343600
Transcript ID LotjaGi2g1v0343600.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Tetratricopeptide repeat protein 7A; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|A0A0R0LB33|A0A0R0LB33_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0343600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:82086118..82094088) extracted from Lotus japonicus Gifu genome v1.2.

AAGAGGGTTATGAAATCAATGAAACTTCATGCATGCTAATGCGCTTCTAATCTCACCACATTACCAAACCACTCTTCCTT CCGAATCCCATGCCCCAGTCTTCGCTAATCAATGTTCTGAAAAAGCCACAACCCTTTTTATCTTTCTTTGTCAAAATATA TTTATTTAATTGTTAGAATTTTTCTTGACATTCCACATTGCAGATTCTCATCATACTAGATTTTACATTCGTGCTGGAAC AGCGGTTGACCTGACACAACAACCACCCTCCACTCTTCTGTTCCTTTCTATTTGTTTTGTTTGTTTGTTTCTTTCTTCAG ACAAGACAAAACAAACAAAGATGAAGGGTGTCTGCAAATGCATAGTTGGTCAAATAAAGATGAAGGGTGTCTTAGATCTT GTTTGAGGTCACTGTTGCATCTCTCATAATTGTCTTGGTGCCACGTTTCCTTGGTGAGTCCTATGATTATGTTCTGTTTT TGCTTTTTTTTGTTTTCTCTCTGTTATTCCATTTCCCATGTGGTTTCCTGGATCTGCAATTTTTTTCATTCCCATTGCTT TTTTGTTTACAATTTTGAATTTTGCTTCCAAAGTTTGATTCTTTTTGTAATATTATGGAACCCCATTACTAGAATAATGA GCTTTGGAGGTCAAGAAACATGCATTTGTTGGGGGGTTGAATACTTGAATTGAATTCTAGAAGGCATTGTTTGGATCCGT TTCCAGCGGTGCCGTGGGGAATGGGGGATGATGTTTGTTTTTCTTTGTGATTATGAATATTTAATAGGTTTGTATGTATG GGTTTTTATTTAGCTTCTTTTGAAATGTAATGATGAATGTGCAGTGTCACTGAAGCATCAAGAGGATAAAGAAATTGAAA CTTGATTGAAAAGTGTGGATGTGGGGTGTATGCTGGTAGTGGGGAGATGATTCATGGAGTCGAGTGAGTACGAGAGCGTG TCGATTCGAGAGGTCCATGCAAATGGAAGCAGCATGGCTGCATCAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCA AGAGGCGGAATCCGCATTGCGAGAGGGGTTATCACTCAATTTCGAGGTCAGTTTGTTAATCACGCATCATTTAGTTTGCT GGCTTGTGTGTGCCATTTTTTTGTTTCCCTTTCATGACATGAATAGGCAGCTGTTTATGGATTGTTTATCTAATATTTGC AAATAGTTATTAGAAAAAAAAGGAGCAAAATGCTACTAATCATGGAGGAACCTGGCTCAAGCTACCCTTTGTTGCTAAAT GATTGCTACCATTGTTGCTTAGTGCTGATTTTTTTTCCGGGCACCATTTTTGAATTTGGCATGGAATTATTACTCATCAT TCTTGCAAATTATTTAAGCTTCATTACGTTGTCTTACTATGTCTTCCCTGTTTTGGAGCAATCTAATTCTATTGAGACAA GTGGGTGCAGGGTCATCAAATATGTTAATAATGAATTGGTGGATATTTGGAGGATATAAGTTTTTTTCCTGGTTTTCTAA GATATGATTAGACCTTTGATTTTAAAGCAAATTTGAAGGTCTTTAGTGTCCATCATTGTTTCTTATAACAATTTAATTTG AGGTGTAGAAGAATCTGGTCCCAAAAACCTTCTACTGAACATATATTAATACCTTCCACTCATAAAGTCTGTCTTTGAAT TGTCAAATTTGTCTTCCTTGTGGCTTGTGCTATGTTTGGACTCTGAGATTAATTATTATGTTTTGGACAACCATAAATTT TTGTAGTGGTTATGAGGAATCTGTTGTTTTGATGGTACTAGGTTGGCATAGGGTAAGTAATGATGACAGAAGTAATAAAG GTTTTAACAAAGAATTTTGTTAATGCATGGATTATCTATATAGTAGTAACTATTTTGTCATTTTTAACACCTTGGACAAT TAAGGGAGTAAATTTCTTCTAACATGAGCCAAACCTTAGAATACTTCCTTCCCAGAATAAAATTTTCATATCTCTGAGAA CGTAATTTTTTCTTTGGTAATGTGCGTAATTTTTTCTTTGGTAATGTGATCAGTACTCAGATTATACTTATGTAAACATT GAACATATTATGGATTATATGATTTATATATATGGGCATTATGTAATTGGAATTAAAACTAGATAAATATGCTGAGGCAG TAAATGAACCAATATGCGGTACAAAATGTAAATTTGATGCAATCTACGCCTTGTACATTTGGTATATGAAGGTGTTGCAT GTTTTCTCTTTGCTCTGATTTGAAGCCACACTTTGGGGTTAAGTTACTCAGTTGTTTGAGGTTTGCTCCTTGATTATTAC TTCAACACAGGAAGCAAGAGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTG ATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAGCCCTCCTTTTCTGAAAAATCACCGGTCAAGAAAGGTCGCACT CGCACTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCCAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCT ACAAAAACTGGGGAAATTTTCTGGTATTGAATATAGTCTTGACTGTTGAAAGTTGTTCTATACCGGTTGTTTAATTTTTC AATATTGCTTTTCCTTCTGAACAGGAAGGATCTGTCCTACACGTTTTATATTATTCATGAATCAGACATAAAACATTGAG ATGCTTATTTATTGGATTCTGCAGAAGCAGCTAATGATTGTAAACGCATTCTTGACGCTGTTGAGAAGATTTTTTATCAG GGCATACCTGATATTCAAGTAGATAATAAACTGCAAGAGATAGTGAGCCACGCAGTAGAGCTCCTTCCAGAGCTTTTGAA ACTAGCTGGTTGCTATGATGAGGCAATCTCGGCTTATAGGCGCGCTCTTCTTAGCCAGTGGAACCTTGATAATGATTGCT GTGCAAGGATTCAGAAATCGTTTGTTGTTTTTCTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGCTTAGCTGTTCAA GTTGAGGGGTCATATGTGCCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTTAATGATTCTTATTAGAAAGTTTTGCCT TGGTAAGACGAAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAACCAAACTTCTATTTTGG CAAAGAACTTTCAAGAATTGATGCCCGGGGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGA GCAGGACAAAACGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAGCATGAACGACCAAATGACCTTACATCATT ATTGTTAGCTGCTAGGATCTGCAGTGAGCATCCCCATCTTGCTGCTGAGGGAGTGGACCATGCCCAGAGGGCAATAAGTA ACGCTCAAGGCCTGAACGAGCATTTAAAAGGCGTCGGTCTACGGATGTTAGGTCTTTGTTTGGGAAAGCAAGCTATGGTT GCTTCTTCTGACTTTGAGAGGTCTTGCCTTCAGTCAAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAGCGAAA CAATTCTGATTTGATTTTTGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAGGC ATTTCTTTAATGAAACTGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGTTCTGATTTTGTCTGCACAACAAAAATTT ATGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCTAGATGGGAGCAGGGGCCACTACTTATGCTGAAAGC AAAACTGAAGATCTCCCAATCACGAACGATGGATGCTATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCCCAGA AGAAGTCCTTTGGGCCTTTCCGAACTTGTTCAAAGGTAAGATTCTGCCATCTACTTATTTTGCTAGACATATAAGTTTTA TATGAGCTTAGAAGATTATGGAAGCTTAAAAAAGCGAGCTTAGAGAAGAAACCAAAAACCACCCTGATGTTAATTACCAA ACAGAAATACAGAAACAAGCATTTCTTAATGCTGCAGAAGGTAACCTATGAAAAAGTTGAGTTTGTTTTCTGGACATGGC AGTTATATAGGAAGCTGTTGAAATTATAGGGCTTTAAGTCGAGAAGAAACTGAGATAAACTAGATTGTGAGTAATATTCT CTTGTGTAGTTTTATGTGATATGTTATCAGATGTTTTGGATGTTAATCCCTATTTATACCTGTACCAACCTCCTATTCCT AATTAAAGAAGGAAACAAATCATGAAATACTGGAAGAAAAAAATATCAAAAACAATACTAAAAGATAATCTAAGATACTC TGCGTTGCTTCAAGATAATGAAATACTAGGAGTTATTTTTCATATATTCTTGGGTTAAATAAACTTTTTAGTCCCATGTC TAGATTTGGTTTTAGTCCATGTTATCTATTTTTTATGATTTTAGTCCATACATTTACAATTAATTTTGGTTTCGATCTCC ACCGTTAATATCTCATTGTTAATTGGTGATCCACGTCACCATTGACTCATGTCCAGAGTAATTCTATGTGGTCTATTTTG CTCCCAAGTTAGATATGATAGTTAGCTCTTTTAACACAAAAATTCACATTCAGATGAAGCCTCCTGAAATTGAATTGTCT TGTTTTTTTATTAAAATAAATAGCCATTAGACCTGACTTGACAACAAATAGGCCACTATCAATTACTCTGTACATCGTCG GTGTTGACGGAAGCGGTGTTCCAGAGGTTGTGGGTGGTAATTTGTGGCTGGCTGGCTCTAAGAGCAAGGTTTTTGGAGCG AATTTGTTTCCTCTTGCAGAGATGGTTGGTTCAGTTTTTTGGGTTGAAGGGTGTCTTGGATCGTGCGTTTTTAGGTGCTT CGATCGGCCTACTCTCCGTGACACTATGTTATGGAGGGAGCTCTGGCCGTGTTTGGTTGATTAATTCCAAGAGTTTTTTT AGCGTTGCAGCTTTGGATTTGGACGTGGAGTGGGTCTTTGGTGTTGTGGGTGATGATTGTTGGCTTGTTTGTTGGGTCTT TTGTTTACTTGACTAGATGTGTCTCGGTGTTGTAGGTGTCGAACGACTTATGTCGCTTTTTTCAACTTTATTGGGGCCTT TTCTAGTAGAGTAGACTCTAGGGTTTTTGGTCTTTAAAAGCTTCCTTGTGTTGCTTACCAGCTTTTGTTGGTTAGGTTAT TATTCCCATGTTGAGAGGGGTTGTTTCTCAACAAGTTATATTTATATATATATCTATTATTCTCCTTTCAAAAAAAAATC AATTACTCTGTAGATGTGGCAATGGTGAGATGGTGGCCCTCTGTTAGCCACATCTCCAATTAACGATGAGATTTTAATAA AGAAGATTGAAACCAAAATTATCTATAAAAGTAGAGACCAAAACTATAAAAATTAGATTATTCTCCTTTCAAAAAAAAAA ATCAATTACTCTGTACATGTGGCAATGGTGAGATGGTGGCCCTCTGTTAGCCACATCTCCAATTAACGATGAGATTTTAA TAAAGAAGATTGAAACCAAAATTATCTATAAAAGTAGAGACCAAAACTATAAAAATTAGATGGTAGGGAACACAGCCAAA TCTGACAATAAAATGTTGAACTAAAAACTTATTTAAGCTTATATTCTAATAGAAGGTTTATCTATAAAACATAACTATGA GTTCTCCAACTTATTTAAGCTTAGATTGGGAGAAAAAAAATGAGCATAAATTTGTTCTTTTAATATATTTCCTTTTATGT TGCTCCTTTGCTCACTGGAGTTTAAGTGCTTCCTTCATCGATTCTAAAATCAATATTGGTTATCACTCTTTCTAGGTCGA TGATGATAAAGTAAACGAATTTGAGGTTTGGCATGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTG AAATCTGTTTGCAGAAGGCCAAGGATTTGAAGGAGAACTCCGCAGCAATAATGCACACAGAAGGCAAGACCAAAATCTTT GTGCTGTTTGAGGTTTTCTATTTTTGCATGTTGAACTTATCTCCAGCCTTCTTTTAATCTAATTGAGACTGATTCAGAAC CAGGGATTCAATCCCTTGCTTGCACATTCCTTTCTATTGGGAGTGTTTGTGACTGGTCATAGGCCTAATGCTGGATCCAT TTGTAGTGGTATTTAAAAATTTAAGACGGTGAAATCACATCCACAGATGGAGCAAATCTTTGGTACTCTATTGTACTGAG GAGTCAATGCTCCCTCTCTTACAAACACAGTTATCTTTCATTTTTATTTTTGTAAAAATATTAAAAAGGGAATAAATGAC CATAAAAGGATAGGTGACAACATTATAGATGATAGTACCTACTAGTACTACTACTGAATTTTCCCCCCAAAGAAGATATG GAGATAGAGCACGTCAACTTGTATGATATTAAATTCTGAGAGAACCTTCTCTAGGATTGACGTTTTATGTTTTTATTATA TGCTTCTATCAGGTGTCTTGTTCGAAGGACGCGGGCAAAATCAAGAAGCTCTCAGTGCTGCGATTAATGCTATCCTACTT GAGCCAAACTATGTTCCAAGCAAGATCTTGATGGGTTCTTTGGTTCAGAAATTGGGTTCAGAGGCTTTGCCTGCTGCAAG AAGCTTGCTGTCTGATGCACTTAGGATAGAGCCCACGAACCGCATGGCTTGGTATCACTTGGGATTGGTTCACAAGAATG ATGGCCGAATGGGTGATGCTGCTGATTGCTTCCAAGCTGCTTACATGCTTGAAGAATCTGATCCAATTGAAAGTTTCAGC AGCATACATTAACTAGCTTCGACTTCAGAACAGTTAACTCTGCAGCCATCAGTGATTTATACCATTGAGTTTTCAGCTAA TACATCTTCTGTGTTCAATGGGACACATTAGGAACATTTTTAGCAGATACATTCCCTTTTTGAAGCAGAAAATTGAAATA TTGTCATCACAGACTAGGCTCAAAGTAAAGGAACTGAAACCATTATTTGAGAATAAAATGAAACGTGATCGATGTTAGTC TGGTTGTAGGATGGATGAATTGTAAAGAACTTAGACTGGCAGAGATTTTAATGTATGTCGCTTAGTAGAGCAGTATCTAT GTAGAGAGAATAGAGATTCACTTTTTTTCTTTAATGTGCTTTAGTTTTTAGGCTAGATCTACAAAAGGAAAAATGTGTTT GGAGAGTCACTTGAATACAAATGCAACCCCTTGTGCTGTTATGTACATTTCTGTAGTAACTTTAACTTGGATGTGGTTAC ATGTGTAGGTGTAAGTAAGCCCAAATATATGTTTCCACTTTCTTTTGGTAGAAAGAAATATGCTATGCACAATTATATTT CTACTTTCATTTGGGCACATATACCCATTCTTACAATGTGTAGATAGTGCATGTTTCGAATAATCACGTATGTCATAGAT TGCATTTGGGACATAAGTAACTGTAAGTAGCTTCTCACAAACTTACGTGAATATAAGGCGTCCAAATAGAGAAGAAAACA CGCGGTTAGTTTATTACCCTATATAATGCATATTGAAAATAAGCATTGGCTTTGTGGTTAATGATAACTTTTTTTACGTT TCAAGAAGATTAAAGGTCATATTAGTCCCTGTCTTTGTATGTGATTTTGAATTTAGTCCCTTTCCGGAAAAAAAACTAAG CGATATCTCCCTGACATTTTTTCAATTTTGGTATTAGTCCTCGTCGGACGGCGAAGCTCCTGCGAGGCTCCTAGTGGCAC GTTGACATGGAAAATAATCCTAGGTGGATTTTTTTATTGTTAACTTGTTTTTAACACAATTAAAAATTACATATTTATAA GGATGAAAAGCTTGTGCATTAGTATAAACCTTGTTTACACTCACAATTTCC 

CDS sequence (LotjaGi2g1v0343600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTCGAGTGAGTACGAGAGCGTGTCGATTCGAGAGGTCCATGCAAATGGAAGCAGCATGGCTGCATCAGAAGTTGA GGCCAAGCTTGATGAAGGAAATATTCAAGAGGCGGAATCCGCATTGCGAGAGGGGTTATCACTCAATTTCGAGGAAGCAA GAGCTCTTCTTGGGAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAA GCTGCCATACAGCGATTGCAGCCCTCCTTTTCTGAAAAATCACCGGTCAAGAAAGGTCGCACTCGCACTGAATCACCTTC TTCAGTCTCTCAGCATGCTGCCAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAAT TTTCTGAAGCAGCTAATGATTGTAAACGCATTCTTGACGCTGTTGAGAAGATTTTTTATCAGGGCATACCTGATATTCAA GTAGATAATAAACTGCAAGAGATAGTGAGCCACGCAGTAGAGCTCCTTCCAGAGCTTTTGAAACTAGCTGGTTGCTATGA TGAGGCAATCTCGGCTTATAGGCGCGCTCTTCTTAGCCAGTGGAACCTTGATAATGATTGCTGTGCAAGGATTCAGAAAT CGTTTGTTGTTTTTCTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGCTTAGCTGTTCAAGTTGAGGGGTCATATGTG CCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTTAATGATTCTTATTAGAAAGTTTTGCCTTGGTAAGACGAAATGGGA CCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAACCAAACTTCTATTTTGGCAAAGAACTTTCAAGAAT TGATGCCCGGGGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCAGGACAAAACGACAGT GCTTTGAATCTGCTTAGGAAGTCTTTGCACAAGCATGAACGACCAAATGACCTTACATCATTATTGTTAGCTGCTAGGAT CTGCAGTGAGCATCCCCATCTTGCTGCTGAGGGAGTGGACCATGCCCAGAGGGCAATAAGTAACGCTCAAGGCCTGAACG AGCATTTAAAAGGCGTCGGTCTACGGATGTTAGGTCTTTGTTTGGGAAAGCAAGCTATGGTTGCTTCTTCTGACTTTGAG AGGTCTTGCCTTCAGTCAAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAGCGAAACAATTCTGATTTGATTTT TGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACTG GTGGCTCTATATTGAAAGCTTGGATATTGCTTGTTCTGATTTTGTCTGCACAACAAAAATTTATGGAAGCTGAAGTGGTG ACAGATGCTGCTTTAGATCAGACTGCTAGATGGGAGCAGGGGCCACTACTTATGCTGAAAGCAAAACTGAAGATCTCCCA ATCACGAACGATGGATGCTATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAGTCCTTTGGGCCTT TCCGAACTTGTTCAAAGGTCGATGATGATAAAGTAAACGAATTTGAGGTTTGGCATGGTCTGGCAAATTTATATGCTAGC CTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAAGGATTTGAAGGAGAACTCCGCAGCAATAATGCACAC AGAAGGCAAGACCAAAATCTTTGTGCTGTTTGAGGTTTTCTATTTTTGCATGTTGAACTTATCTCCAGCCTTCTTTTAA 

Protein sequence (LotjaGi2g1v0343600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESSEYESVSIREVHANGSSMAASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQ AAIQRLQPSFSEKSPVKKGRTRTESPSSVSQHAASLVLEAIYLKAKSLQKLGKFSEAANDCKRILDAVEKIFYQGIPDIQ VDNKLQEIVSHAVELLPELLKLAGCYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQVEGSYV PKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSVCNQTSILAKNFQELMPGVYHRIDRWNSLALCHSGAGQNDS ALNLLRKSLHKHERPNDLTSLLLAARICSEHPHLAAEGVDHAQRAISNAQGLNEHLKGVGLRMLGLCLGKQAMVASSDFE RSCLQSKALESLEEAIRLERNNSDLIFELAVQYAKHRNLTAALRSARHFFNETGGSILKAWILLVLILSAQQKFMEAEVV TDAALDQTARWEQGPLLMLKAKLKISQSRTMDAIETYRYLLALVQAQKKSFGPFRTCSKVDDDKVNEFEVWHGLANLYAS LSHWKDAEICLQKAKDLKENSAAIMHTEGKTKIFVLFEVFYFCMLNLSPAFF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 589 589 0.0
PANTHER 1 589 589 0.0
Gene3D 20 207 188 1.9E-9
SUPERFAMILY 49 198 150 4.74E-6
SMART 118 151 34 3.1
SUPERFAMILY 118 443 326 7.59E-10
Gene3D 277 452 176 2.2E-9
SMART 302 335 34 15.0
SUPERFAMILY 407 582 176 5.06E-11
Gene3D 454 593 140 2.1E-7
SMART 548 581 34 0.079

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0343600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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