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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0345400 |
| Transcript ID | LotjaGi2g1v0345400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein 1; TAIR: AT4G34660.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8VWF1|SH3P2_ARATH SH3 domain-containing protein 2; TrEMBL-Plants: tr|I1J846|I1J846_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0345400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82242999..82247193) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAACTAGAGTTATCTCCGAAAGTCAAGAGCGTATTTGGTGGAAATCTTAAAAAGACACTTTTTTTCCCCTCAGATTC TCTCTCTCTCTCTTAACCCGACATGAACAACACATTGATAGCAGTTTTCACTTTCACGCTCCTATATCATTATTGTAGAC AGTATCTGTTCCGTTGTGTTGTTCTAACTGTTCCAAAACCCCCTTTCTCTTTTTCAACATCCATGTCTATCTTCTCTGCT TCAACCAATTGAAACCCCAACACACTGTTTCTCCGATCACTTCCTCTCCGTTCTAAAAAAAGGTGAAGAATGGATGCTAT ACGGAAGCAAGCTAGCAAGTTGAGAGAGCAAGTTGCCAGGCAACAACAGGTGATGATGATTCTTATTCTTTTTCTTCTCT CTCAGATTGAACCTTTTTTTTATGTGGGGTGGTGATTTCTGTACTAGTATACTAGTATATTTGTTTACAATTTAGGTTAA AGTTGCTTTTCTAGCAAGGGATGATGGTATTAATTTAAGAAATTTTACAGTGATTTTGCATAGAGGCAAGTTATTGCTTC AGGTTTCAACTGATGGTGTGGGATCCTTAAACAGAAAGTGTAGATTCTGATTGTAAACTGTTCATTTTACTGTGTGATAT TGATGATTGTTGTTTTGCAGGCTATACTTAGACAATTGGGCCAACTTAGCAATGAATCGCTCATGACTGATGAATCTGAA ATTGAGTGTCATCAGCAACTGCAGAAGTTATACACTTCTACAAAGACAGCTAAGGTGTATTTCTGTAATTAGTCCATTGC ATTGAAAATTCAGAGAGTTTTGTTGTTTGGTCAAAGTTTTAACCGTTATTATGCTTGCAGCATTTTCAGCGGCATATTGT TCGCGGTATTGAAGGATTCGTTGCTGTTAGTTCCAAGCAGATGGAGATAGGTGAATTTGCTTTTGACTTTTTGCCTTATG TTCTTGATTTGATTTTAGCCTCAGGGGTTATAATTGTTGTTTTATGCTATGTACTTCAGTAAGAAAGTTGGCGAAGGACT TCTGTAAATATGGGACCGAGAATCAAGGCAGTACTTACCCTCTTTCAAGGGCTTCTATTCAATTGGGTAACTCGTATGAT ATAGTGGAGAATGAGAGGGAGACTTTGCTTGGGATCTTAGGTGATCAGGTAATCTTTTGGGAAATTTCTTCCGTAGTCTT TAAAAGTTTTTTTTGTAAAAGACTTTGTTACCGTAGAGCATATGATATATTAATGTGCAGATTAAAGTTTTTAGGATGAT ATTATGCCTATCTGATTGCTAGTCGCTGAAGTAGTTTTTTACTATAACATCATACGAGTTTTGGAAAGTTCAACTTAAGC TAGTATAAATCAACAGTGTTGCTTCATAATTCATACTTGTATTAGGATTTAGGATATTAGTGTTAGAATATAATATAAAG CCATTCATGTGGCCCTTACCCAACAACTTAAGCTTTTGGGATAATTGGCTATTTGACAATTAGTTCTTTTTGCTTGACAG TAACAAGAAGCCCTAGTTTCTTAGAATTATTTACTTAGACAACTTAAAGGAACTATTACTCAATGGAACTCTTTGTTCTT TAGAAATATTACTTAATTACCTTTTATTTTGTAAACAAATTGTCTTTTACCTTCAATTTGTATGTCATATACTCATATTT TGAGCCTTCCATTTATCCAAAAACAAAAACAAAAAACATAGAGACTTCCAATCATGTCTTTTCCTTCCCTCCCTCCCCCC AATTGGTGCTTCTAATTCTGCTTTAGGTTTTGTATAGATTTCTGAGCCACTGCGGGCACAAATAACAGGAGCTCCTCTAG AGGATGCACGCCACCTCACTCACCGCTATGATAAACTTCGGCAAGAGGTAGAAGCGCAGGTAATAATTTACTGCCACAAT GGCATGCATATGGTGGTGTGCAACACAGGATATTTATCTTAGATATCTTCTCATCAGGCTGCTGAAGTTTTGAGGCGTCG ATCAAAGTTGAGGGATTCTTCTGTTTCTGCAGACAGTTCTATGAGGCTTCAAAATGCAGAAACAAGGTCGAAAGAGCTTA AATCTGCCTTGGTGGCACTTGGTAGAGAAGCAACAACCGCTATGTTGTCAGTTGAAGAACAACAGCAACAGATAACTCTC AAGAGCCTTTGTACAATGGTATTGCTAGATCCTATCATGTGATTGCTGGTTTTACTTTTATGTTCCTCACTGATGCTAAA CATCATAGATTATTGCAGTATTACTTTATAGCTAACAGCTGATTGAATGTTAAACTGTTAAAGTTTTGAAGATATCATTA TTTGTTGTTCATACAAGAGGAGATGCTCTTACATTTACCAAAAAAATTGGTTCTCATCATTCATATTGAGTTATCTTATG TTTGTTTCACTGTAAACGTTGATTGTAGTTCTATTTTGTATGGTTTTTGAGCCTTGAGAAAATTGTTCTTATCCAACCTC CCAAAATCATTTTCTACCCTTTTCCATTGACAGGTGGATGCAGAGAGAGCCTATCATCGTCATGCCCTTGTTATTCTAGA GAAACTATGTGCTGAGGTTAGCCACCATGTAGCCAAATCTTCTTTCAAATTAGGAAAATAATTCCTAGTTTCAATGTCTA GTCTACATGTTGGCTTCTAGCAATAATATTCTGAACATTGCTTTTTTGTACTGATCAAATTCATAACATGTCCTTCTATT GGATTTTTTTGGAGTTAGATGGTTGATGAGAGACAACCAAAAGAATCTACATCATTTCCTCTGCCAAAAGATGGACACAA TCAACCTGCAGATGAGAATGCTAATTCAAACAGCATTGATTATAAACAACACAGTCAAACAGGCACATACTTTTTTGCAA AGGTAAGAATAAATCTGTCTTTAGAGCTCTTGCTCTTGCATTTTACATGGCCACATTCTTGCAGTTGATTGCACAAGATG AAGCCCATAAAGATAATTAAGCTTTGGTTTTGTTGCAACGGATACCCCACACACACACATTGAGAAATCTTGCTGCAAAA AAGGATTCATGTTTTGTTTTGGTATTGTTCAAATATTTTAGAACTCAAACCAGTGATATATTCCATTTACATTCTCAAAT TGATTCATGCTCGCCATTGCTTGTCTTGTAGGTAATACATCCATTTGATGCTCAAGCAGAGGGGGAGTTAAATCTATCAG TTGATGATTATGTTGTAGTTCGCCAGGTATTTCTTTAAGGACTTCTATTCGAATATGAGGCTGCATACAATAAAAAATGT TGTCGGACCCTTTCCCAGGAGCTTTAATGTTCCGGGCTGCCTTTTTTTTCTATTTTTTTATGCATCAATTGTTCTCCATA TAAATAGACTCATTTTCAATAATACGTTTCCAGGTTGGTTCCAATGGATGGTCTGAAGGAGAATGCAAAGGAAACGCTGG ATGGTTTCCCTCTGCTTATGTACAGAGACAGGACTTAATACCAGCCAGCAAGATAACGGAATAAAGTCGACACTGTTCTT TTGAATTGGTGATGAGGCAATAATTGTATATTCTCGTAATCACGGAAAAGCCATAGCATTCATGTGCTTGCTATTATTTT TGAGTGGTTCTGTCATCTGTGCAGTATCTTGTATATGTGAGCATAAAATATATAATAGGAAATGTAGCAGTTTAAATATG TAGATTGATTTATGATTGACATTTGCTTAAGCCCTTGGGGTCATTTTAAGGAGCTTAGGTTTCAAGATGAGAAACTTAGC AATGTGGATAAATGTTGAACTTCTGCTGTCCATATTTATAGAGGATTCTGTATTTCTAAATGAAATTATGGCGGAAATTA TTGTCGTATCTAGAAATCTTCGAATAGGAGTGCTAACAATATCTTTCCAACACTCTCTCATTAATTTGTTGAAATTTATG TGGATTCCACTTGAATTTTAACAATCAATGAGAGTGTTCAGTGTTAGAAAGAAAGAGTTGCTAACATAATTATTTTGTAT CTTTATAAAGTGGTGAGGTCTTGCCAGACTAGCAAGAAATCAATATAGCTTCTGTTAAAGTGATATAAATGGTTTCAGCA GATTATCTAAAAACAAAATGAATATTCAAACAAGACTATATCATAAAATTCTACCTACGAGGGAGGGGTAGCTCACATGC TGAGTGTGAAGGCAAGTAGGCAACATGTATAGAGG
CDS sequence (LotjaGi2g1v0345400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTATACGGAAGCAAGCTAGCAAGTTGAGAGAGCAAGTTGCCAGGCAACAACAGGCTATACTTAGACAATTGGG CCAACTTAGCAATGAATCGCTCATGACTGATGAATCTGAAATTGAGTGTCATCAGCAACTGCAGAAGTTATACACTTCTA CAAAGACAGCTAAGCATTTTCAGCGGCATATTGTTCGCGGTATTGAAGGATTCGTTGCTGTTAGTTCCAAGCAGATGGAG ATAGTAAGAAAGTTGGCGAAGGACTTCTGTAAATATGGGACCGAGAATCAAGGCAGTACTTACCCTCTTTCAAGGGCTTC TATTCAATTGGGTAACTCGTATGATATAGTGGAGAATGAGAGGGAGACTTTGCTTGGGATCTTAGGTGATCAGATTTCTG AGCCACTGCGGGCACAAATAACAGGAGCTCCTCTAGAGGATGCACGCCACCTCACTCACCGCTATGATAAACTTCGGCAA GAGGTAGAAGCGCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGGATTCTTCTGTTTCTGCAGACAGTTCTAT GAGGCTTCAAAATGCAGAAACAAGGTCGAAAGAGCTTAAATCTGCCTTGGTGGCACTTGGTAGAGAAGCAACAACCGCTA TGTTGTCAGTTGAAGAACAACAGCAACAGATAACTCTCAAGAGCCTTTGTACAATGGTGGATGCAGAGAGAGCCTATCAT CGTCATGCCCTTGTTATTCTAGAGAAACTATGTGCTGAGATGGTTGATGAGAGACAACCAAAAGAATCTACATCATTTCC TCTGCCAAAAGATGGACACAATCAACCTGCAGATGAGAATGCTAATTCAAACAGCATTGATTATAAACAACACAGTCAAA CAGGCACATACTTTTTTGCAAAGGTAATACATCCATTTGATGCTCAAGCAGAGGGGGAGTTAAATCTATCAGTTGATGAT TATGTTGTAGTTCGCCAGGTTGGTTCCAATGGATGGTCTGAAGGAGAATGCAAAGGAAACGCTGGATGGTTTCCCTCTGC TTATGTACAGAGACAGGACTTAATACCAGCCAGCAAGATAACGGAATAA
Protein sequence (LotjaGi2g1v0345400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAIRKQASKLREQVARQQQAILRQLGQLSNESLMTDESEIECHQQLQKLYTSTKTAKHFQRHIVRGIEGFVAVSSKQME IVRKLAKDFCKYGTENQGSTYPLSRASIQLGNSYDIVENERETLLGILGDQISEPLRAQITGAPLEDARHLTHRYDKLRQ EVEAQAAEVLRRRSKLRDSSVSADSSMRLQNAETRSKELKSALVALGREATTAMLSVEEQQQQITLKSLCTMVDAERAYH RHALVILEKLCAEMVDERQPKESTSFPLPKDGHNQPADENANSNSIDYKQHSQTGTYFFAKVIHPFDAQAEGELNLSVDD YVVVRQVGSNGWSEGECKGNAGWFPSAYVQRQDLIPASKITE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 362 | 359 | 4.9E-174 | – | |
| PANTHER | 4 | 362 | 359 | 4.9E-174 | – | |
| Gene3D | 28 | 259 | 232 | 1.3E-10 | ||
| SUPERFAMILY | 42 | 254 | 213 | 4.19E-22 | ||
| Coils | 148 | 179 | 32 | - | – | |
| Coils | 189 | 209 | 21 | - | – | |
| MobiDBLite | 258 | 287 | 30 | - | – | |
| Gene3D | 281 | 359 | 79 | 5.7E-15 | – | |
| ProSiteProfiles | 295 | 354 | 60 | 20.981 | ||
| SMART | 298 | 353 | 56 | 1.0E-14 | ||
| SUPERFAMILY | 298 | 354 | 57 | 9.98E-16 | ||
| Pfam | 302 | 350 | 49 | 8.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0345400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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