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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0346300 |
| Transcript ID | LotjaGi2g1v0346300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carbon catabolite repressor protein 4 like 4; TAIR: AT1G31500.1 DNAse I-like superfamily protein; Swiss-Prot: sp|A8MS41|CCR4D_ARATH Carbon catabolite repressor protein 4 homolog 4; TrEMBL-Plants: tr|I1L598|I1L598_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0346300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82290471..82295710) extracted from Lotus japonicus Gifu genome v1.2.
CGTATAGAAGAAATCCAGAAACAGACACTCTGAAGTATGCTAAAAGCTGTAGCTGCGCTTCCTCTCTCGCCCTCTTTCAC CACCAGGTACTTACATGTATATCTTGCTTATCTTATGTCATTCAAACTAAATTAATTCACATTCTCAGTGATTTATTTAT TGAAGAAGCGTATTGAGGAAGATGAGTTCATCATCGCCGCCACCAATTGTTCATCCCAAGTTCATTTCTGTAGAAGCCGC CGATATTCATTCCAGAACTAAACCTGATGGATTCAGATTTAGCCTCGTCTCGTATAACATATTGGCTCAGGTATATGCTA ATTAATTTCTCAACCAACTGATTTCTAACTAACTAACTAACTAACTAACTAACTAACTGTAACGGTTTTAATCACTCACA ACTTTTTGTAGGTTTATGTGAAGAGCGCTTTTTTCCCATACTCTCCTCCAGCGTCTCTCAAGTAATGTGCCGCGTTTGCA TTTCGAGTTTTGAATGAAGTTTGTGAAATTTGAATCTGTAATTTGATTTTTACTGTTGTTGATTTTTGCTCAATGCAGGT GGAAGCACCGTTCGAATTCGATTTTAGAAGTTCTTAAGGGCTTGGGAGCTGATTTTTTCTGCCTGCAGGTTTGTCTTGCG TTGCGGTTTATTGGATACTTAGATTCAAATGATATTGTTCTTATTGCTGTGAATTATTTCAGGAAGTTGATGAGTTTGAT AAGTTTTACAAAGGGAGCATGCAGGCCTTAGGATATTCTTCTATTTATATGAAGAGGAATGGACAGAAGCGTGATGGATG CGGCTTGTTTTACAAGCATGACCGGTATGTTCTACGTTTGTGCTAAACCTAGTTATGCAATGAGCGGTTTATAGTATAAA TTTTGCCTAGAGTTTGGTTAGTAACTTGGATATTGCTCATGGATACATGGAGAGAGTTGGAGAGAATTAGAGTAACGTTG CGAATCCAAGGGTCAAAAGCATGTGTTTTATTAGTTTTGTAGTTGAACGTTGAAACATTTTCCCCCTATAACTATGAGTG TGCATCGAGGGGTCCGGTTAACTTTGGTCCCTAATCTTTTTAATCATAGTTCTAGACGTGTTTAACTGTTTATTGAACAC GGACAAGAGCGGTGCTATAGTTTACACTTTTTACTGATAATATAATCTTAGTTGGAGAGTTGAGAGAAGAAATAAATGTG AAGTTAGAAATATAGAGACAAGCCTTGGAAACACTTGGCTTCCACCAAAGTAAAAGTAAAAGGGAATATATGGAGTGCAA GTTTAGCAAGAGACACAAGTATTAGCTTAGAGATGAAAACTGGAGAACATATAGTAACACAAATCTCTTGGATTAAGTGC TTTTGGTCTCTAACACAAAATAATTGAGAGATAGAAGGAGCTGTTAATCATAGGATCCAAGTAGGTCGATGAAATGAATG ATGCTTCGTGTGTGATTTTTGATAGAAAAGTAACACTCGAGCTTAAAGGAAAACTTCACGGTACAGTTTTAAGGCCCTGA AGGCTGGGAATACAGAACGAGACTAAATGTTGGGCAGTAAGAAGCCGACAAGAAAATAAGCTCAATGTCTTAGAGATTGT TAATGTTACGTTGAACAAGTGATTATGAAAGATAGGAGAAGATTGGAACACAATCATTAGAAAGTTGGGTAGCTCCCATT GTAGAAAAGATGACAGGGTCTTGTTTTAGGCTGTTCGACTACATGTGGAGAATTTTTATAGGAGCATTGGTAAGTAGATT AAACCAGACGGAGGATAGTCCAATGGTTAAAGGTAGAGGGAAATCAAGGAAAACTATAAGTCAAACTATATTTAGAGCCC CATCACCAATGGTTATAATTCATTGTTGGACTTATGATGAAATATAAGTCAAACACACGGGTTAAATTGTTGATGCAGTG CAAGACTTTATCTAGTACTTTTATAAAATTCATAACTTCAGATAGCATGTGATTCTTGTCTATCCAATCGTTGAATTATA ACTATTTATTATCTTAATTGATGCTCTTTCGGTCCTTATTATCTCAAATAACCTTTATTTAGATTGATCCGTACCTTGTG CTGTTTAGTGCAGAGTTGGTCTTGGAGGAGAAAATCGAATACAATGATCTCGTGAAGTCAATTCAAGATGGGAGTTCTTC AGATAATGATGAACCCAGCAATGTCCAGACAGTCCAGCCAGATAAAAGAAAGAATGTTCCACCCAAAAATGGTAAATGCA GGGTGAAATCAAAGAATTATTTTTGACATCTATATTTCATTATTCATGTTAAGGGTTGCCATAGATTGAATTTTGAGCTA CTGTTTTGTTGTTATATATTTACTCATAAACTGGTGGAACCAAAACTTTATAGTGCCTCTTCATTTCTGTTGCTGCAGTG TCCCCCTGCTTTCCGTCCATGGATTTATTTTCTTTTGTTCTGTTCTTTTAAGGGTGGGGTGCGTGGTTCTGTTATCTTTG CCTGGATTTATCGTTTCAGCACAGGATGTTAGAAAATGTTGTTACATGAATGCCAACACAGACTTCAGAGCATGCTACTT CATTAACTGGTTGTCTGATGCAGGACCTAAATCCGGTAAAGAAGATCGTGGAGATCCCAATGATCCTCGTGTGAGGCTAA AGCGTGATTGTGTTGGAATTCTGGCTGCATTCAAATTCAAAGATCCGTCTCATCCTGTTGTTATTGTGGCCAACACACAT CTTTATTGGTAATGAAGTGACTTCTATGTGTGAGGGACTTCTGCCTTTTTTTTAAAAATTTATTTCTTAGTTTGTTAACT TTCAATGAAATTTTGTCTTAATGTGGATTTAGTTATGTGAGCACGAGTTTGCTTAATGGTAGAATATTTATAAATTTCAT ATGAATTTCTGCTCCAGGGATCCTGAGTGGGCTGATGTCAAGCTTGCACAAGCTAATTATCTTCTATCTCGCTTAGCACA ATTTAAAACCCTGGTATCAGAAAGATACGAATGCATGCCTGAGGTCATTGTGGCTGGTGACTTCAATTCTACGCCAGGAG ATAAGGTATCTAGCATTTGTAGAATCTTAACTGGCCGTTTTTGAAGATTCTGTTTTCCCTCCGCCTTTGTCATGTTCATA TCTTGCCTGACTCTTGCCTTGGTGCTTAATGTGAGGTGCTCTGTTGAAGTTATTCCTATTGCAGAGTTAGTTTTATCCCT CATAAATCCTGCATGATGCATAAACCTGCTATTAATCCTCTGAAATTGGAATAGTATTCTTATTCCAAAAAAATCGATGT ATAATTAATTAATTACAATATCTTAGTTGCTGGGAAGGGAAATGGCAAAATGTGACTAGAGATTTCACATGGTGGAGATG CATATAAATTTTCTATTTGATAGCCAAACGGAACTAGTAATTGTTTTTCAAATTCCATGAAATGATCATCCTGTACACAC TACACAACTGTATATTGACAAGAGTTACTAAAGAGCTGTTTAATTTTTGTTTACACTTTACAAAGAAAATATAAAATTCT ATGTATAATTAGCTAAACCAATTTAATCCATCAAAAGATATTGTAGAATATAAAATATACCAGCTTTTGGGAGTTTTTAA TTAGAACAAGGATAAACAGTGCAATACCATGAGGAATTTATATTATAGATTGCTCTTTTCTTGTATCAATTGGTTCATCA ACATTGTTCGAGTCATGCTTGAGCACTTGTATGTAGCTTCAGGCGTGCTTTTGAAATTTGAGCTGTATTTTGTGCAATGA TTTACTAATCTATTGAATCACCCATTTTTTGCAGGTATATCAGTGCCTCATATCAGGTAATCCTTCATCAGGTCTGTTGC CTGACTGTATAGAGAAGGCTCCAATTCCCTTATGTAGTGCCTATGCTTCTACTAGAGGAGAGCCACCATTTACAAACTAC ACACCCGGCTTCACCGGAACACTCGATCACATATTGTTTTGCCCCTCTGACCACATTAAACCAATTAGTTATCTTGAGCT TCCAGACTCCGACGCAACTGATATTGCTGGTGGACTTCCAAATTTCAGTCATCCAAGTGATCATCTACCAATTGGTGCTG AATTTGAAATCATCAAGGAATGAACATTCTTGTATGCCAAGAGCTATTTTGAGTTCTCAGGGGTTTTTCATGTTCCATCT CCTTCCCCGTTGTGAATCTTAAGATGAGAGCAAGGCTTAGCAAGATGGCAAAACAAGAATCAAACACTGTGTAGGAGGTT TTGTTTCATGACAAAAATTTCAAAGGTTTGACTTCTTACCCCTGATAAAGTTGCAGCTGAGTCTTGTTGAAGAAAGAGCA TGGTTATATTCTCAAATTTGACAGTTTCAAGAGTTATTATTCTTTGATTTTGATCACTTATTTGATATTCCTCATTTTAG ACAATGTACTTTACTTTGTATTGTTTATGGACAGGAAACATAAGCATTTTTTAGTCCAAAGGAAAATAGGGAAAAAATCT ATTTTGGTGAAAGTGAAGTGATCAACTTTGGTTTTCAGATATTGCTCTTCTATGCCATTATGAAGCTAACTGGGGGCCCT CTAGTAAAAAAGATTACTCTTGTCACTATTATATTTAGATGGTACGTGGTCCATATTCTAAAATTGACCCGTGAGGGATT TTATGATCATGATAACGACTAGCAGTTTAACACTAACCAGTTGATTCAAGAAATAAGTGTTCATTGCCAATTATTTTTAG ACTTTATGTATCACTCTTTTTTTCCTATTACTATATGCTACTCCTAGTATTACTTTTTTATGTACGGACGGTGATAATTG ATAACACAATCCAGTTTATATAGTTGCTAAATTCAATAGATGTTCTTTTGTAGTGTTAGTGTGACAGGGGAAATAAATTT ACCACTTTGGAGTCGAAAGAGCATTTTCTATTTTCCTCAAGTTTCTATTTTTATAAGCTGCAAAATTGAGTTTGAAGAAT TTATCATTTATCCAAATCAAATTGTAGAATAGATAGATTCTTTGGGTAGAATTTTTTTGATCAACAAAATTAAGTCTGCT GTATGTAGACTTAATTTTGAGGGAAATGAATTGTATTTTGTTTTTTACTTTGTAGTTTAGTAGAATTCATTTTAGGTGTG AAACTCACAAGAAATATCTGTATCTATACTTCAAAAACATTTTTCCCTTACAATCTAACTAAAAGTATTTGTTTTAAGCT TATTTTTATTTTGTTATTCTCAAATACAAATATAATATCT
CDS sequence (LotjaGi2g1v0346300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAAAAGCTGTAGCTGCGCTTCCTCTCTCGCCCTCTTTCACCACCAGAAGCGTATTGAGGAAGATGAGTTCATCATC GCCGCCACCAATTGTTCATCCCAAGTTCATTTCTGTAGAAGCCGCCGATATTCATTCCAGAACTAAACCTGATGGATTCA GATTTAGCCTCGTCTCGTATAACATATTGGCTCAGGTTTATGTGAAGAGCGCTTTTTTCCCATACTCTCCTCCAGCGTCT CTCAAGTGGAAGCACCGTTCGAATTCGATTTTAGAAGTTCTTAAGGGCTTGGGAGCTGATTTTTTCTGCCTGCAGGAAGT TGATGAGTTTGATAAGTTTTACAAAGGGAGCATGCAGGCCTTAGGATATTCTTCTATTTATATGAAGAGGAATGGACAGA AGCGTGATGGATGCGGCTTGTTTTACAAGCATGACCGTGCAGAGTTGGTCTTGGAGGAGAAAATCGAATACAATGATCTC GTGAAGTCAATTCAAGATGGGAGTTCTTCAGATAATGATGAACCCAGCAATGTCCAGACAGTCCAGCCAGATAAAAGAAA GAATGTTCCACCCAAAAATGGACCTAAATCCGGTAAAGAAGATCGTGGAGATCCCAATGATCCTCGTGTGAGGCTAAAGC GTGATTGTGTTGGAATTCTGGCTGCATTCAAATTCAAAGATCCGTCTCATCCTGTTGTTATTGTGGCCAACACACATCTT TATTGGGATCCTGAGTGGGCTGATGTCAAGCTTGCACAAGCTAATTATCTTCTATCTCGCTTAGCACAATTTAAAACCCT GGTATCAGAAAGATACGAATGCATGCCTGAGGTCATTGTGGCTGGTGACTTCAATTCTACGCCAGGAGATAAGGTATATC AGTGCCTCATATCAGGTAATCCTTCATCAGGTCTGTTGCCTGACTGTATAGAGAAGGCTCCAATTCCCTTATGTAGTGCC TATGCTTCTACTAGAGGAGAGCCACCATTTACAAACTACACACCCGGCTTCACCGGAACACTCGATCACATATTGTTTTG CCCCTCTGACCACATTAAACCAATTAGTTATCTTGAGCTTCCAGACTCCGACGCAACTGATATTGCTGGTGGACTTCCAA ATTTCAGTCATCCAAGTGATCATCTACCAATTGGTGCTGAATTTGAAATCATCAAGGAATGA
Protein sequence (LotjaGi2g1v0346300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKAVAALPLSPSFTTRSVLRKMSSSSPPPIVHPKFISVEAADIHSRTKPDGFRFSLVSYNILAQVYVKSAFFPYSPPAS LKWKHRSNSILEVLKGLGADFFCLQEVDEFDKFYKGSMQALGYSSIYMKRNGQKRDGCGLFYKHDRAELVLEEKIEYNDL VKSIQDGSSSDNDEPSNVQTVQPDKRKNVPPKNGPKSGKEDRGDPNDPRVRLKRDCVGILAAFKFKDPSHPVVIVANTHL YWDPEWADVKLAQANYLLSRLAQFKTLVSERYECMPEVIVAGDFNSTPGDKVYQCLISGNPSSGLLPDCIEKAPIPLCSA YASTRGEPPFTNYTPGFTGTLDHILFCPSDHIKPISYLELPDSDATDIAGGLPNFSHPSDHLPIGAEFEIIKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 15 | 4 | - | – | |
| Phobius | 16 | 393 | 378 | - | – | |
| PANTHER | 32 | 390 | 359 | 1.2E-112 | – | |
| PANTHER | 32 | 390 | 359 | 1.2E-112 | – | |
| SUPERFAMILY | 54 | 390 | 337 | 1.31E-39 | ||
| Pfam | 58 | 351 | 294 | 2.3E-22 | ||
| MobiDBLite | 164 | 209 | 46 | - | – | |
| MobiDBLite | 164 | 186 | 23 | - | – | |
| MobiDBLite | 189 | 209 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0346300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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