Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0346500 |
| Transcript ID | LotjaGi2g1v0346500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT5G45290.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q69U49|RMR2_ORYSJ Receptor homology region, transmembrane domain- and RING domain-containing protein 2; TrEMBL-Plants: tr|K7LFA9|K7LFA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0346500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82315229..82320660) extracted from Lotus japonicus Gifu genome v1.2.
CACCACCCCACAAAATTTTCCTTACAAAAAAAGCCTCCCTTTCACGTTTCCCCTGCTAGTTGCTTTGTCGCATTCATCCA GCTACTCCCATCACCACCACCACCACCACCATCACCACCCTTTACGCCTTCTCCCTCTCATTGTTCCCTCACACACTCCC AAGAACACTGCATGATCATCAACATCTCTATCTAAACAATGCAGCAGCAATATCACAACGCCACAAAAAAATGCCACTTT AATTCACCATCTCTGTAGATCTGAATCGCCTCCGATCTCAGAAAAAAGAATCAAAGAACCCATTTTGATTTCTGGGTATT TCTCTTCGGCCTATTGGGTCATCGGAAAACCATTCCTTCTTGGAAAGATGGGGTCCAGTGGCAGCAAAGCTTCTTCCTCC TCTTGCAGTTCATCGTCGTCTTCCGGTAGTTTCCGGAAGGGTCGATCCAAGAGGCATAGAGGCTTCCCATCTTATTGTCT TGGAAGTGCATCTGGATCTCGTGACAGTGATAATGACGACCAGGTAATTGGATTTTGGATTGTAAATGGTAAATTTTGAG CTAATGCATGCTTTCTGGGGTAGTGTTATTTATATTTTATGGTTGAATTTCCAGTTACTTTGACATGTGTTTGTGTTTGA TTCAAAACATAATATTCAATGTTACCACTCTCACTATGGTGTAGTTGCTATCATCATGTATATGTGTCTATACATTTGTA ATGAAATCTATGATATGGAAACTCAAAGTTATTGTTTTCTTTTCAATTCATCATCCTATGACATTTTCACTCTTTTTGGA GGTTTGCCTATTAATTTATATTTGGTTGAAAGATTCTCACGAAATAGGAATCGATTCTTAATGGAGGAATGGAAGTAGTG TGTGTTTGGTGTTGAGAAGCAAGATTTTGACACAATGTGGGTCGGTGTTGAGTTCAATGGAAATCCGATTACGCATGTAG TTTAATAAGCTTCTTGGAAGATGCAATATTATATACGATAACCCAACAAACAATACATTGATTTCCTGTTACAAGTCACA AGTTTTAGAAATTCTGGTGGAGCAGAAAGGCTCTACGCCTCTGTCCTCGTGTTACTTGTTAGCCCCATTGCCCTATTGGG CATTTTTTTATTATCATCGTTATTTTGATGCTATGAATGCCTTTCAGATTATTTTGGAAATAATATAATGGACTGGTTTC TCTTTCCAATCTATTCTTATATATTTGTTTCTGTATAACCATCACGTATTTGTATTATTAACATTTTTGGTTGATTTGTC TAAGTGTTCTGGTACTATCTGTCTAACTTTTATTTCACAATCATGCTTTAGGTTTGTGATCAGAATAAAGTGAATGGAAG TGATGCCACATTCACCAGTGGCAATGAAATAGACTCAGGTGAAGTGAAAACAGATTCTTTCAGAAAGGTTAAATCTGATG AATTGCCTTGTATGCCTTCAAACACTGACCTTGATGAGTGTGGCCATGCTTCATCCAGAACTGGTAGCAGCTCTGTCCAT GGTTCAACTCAGTCCGTGAACCCTTCAAGCAGATTCCTTTCTCGATTTAGCCTCATTCCTGGTAATATAAGCTTCAGACT TAGCAGAACCACTAGTTTGGGGTCATCTAGACCTTGCCCTGTTTCTTCAGCAAGTCTCTCAATATTTAACAATGAAGATG AGCTGAATCTGAATCCAGGGCCTCCTAGCAGCTTGATTAATAGAAACGAAACTCAACAATGTAGTGACTTGCTTAATGCA TCTTTTGCCAATCGAGTGCCTGTACAGTACCATGAAGAGGCTTCTAATAATATAAGTTCTAATTCCCCAACATTGGGTTT GGTTGGCAACTTGCAGAGCAGTTCCACACTTTCTCCTATCCAGGATGTGATTGGAGATGGGAACTTGTTCTCTCCAAGAA TTCATCCTGAGACAGAAAATGTTGAGGCTAGACATATGGATAGACGAAATGCCGCTCGAGAACCTGTTGAACGCAATGTT CGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAGCAATATCTGACTTCACCTTATG CCCTCTGCAACAAGAGAGAGAAGTGACAGATACTAGTCAGAATAGTGGAAGACAAGTAGGGGAGAGTGATACAAGAGTGT CCCCGTCAGGTCGTCATGCTGCAAGTTCCCGTATTGCATCTGGGTATCCTCTACCCGGCATGTCTAGCTCCTTGTATAGC ACCCAAGATTATGCGGTTGAGACTTCACGGTCAAGAGAAACAAGGTATCAGGATCTACTGGAACACAGGTCCAATTTCCT TGAACGGAGAAGAAGGATACGATCCCAGGTTTGTGGAGTTTCTAAATTTTGAGTAATAGCTGATGGTTTCATAATATGTT TCCAAGCAAATAGCATAGCCTTATAGTAGAAAAATGGCCATGATGTCGTCATGCATAATTAAATTATTAAATTGAACACC ACATATAGTAAAGTAATGTATTCGACATTGGCATAAATAATTAAATTATGAGACTTTCATAAAAAGGAACAATCACTACA ACCTGAGGTTTACGTGAGTCTTTCTCCCTTCCCTGGATTTATTCAAGGTTAATGATGTATGTTTAAAATGGTTTAGGTTC GTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGA AATGGTCGGTGTACATGTAGAATAAGTGGCCGTGATAACAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCACG AATTGTTATGCTAGCTGAAGCCTTGTTTGAGGTAATTTTAAATAATCTGCTGTCAGCGATTATTGTAGCCATTCAAATTA TGTTTATACAAGTTTAATATTTTACATATTTTGATTAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCC CGTCCTTCCGTGTCTTCTATTGGATCTGTTCCTGCACCTAACGAAGTTGTGGAATCCTTGCCTGTCAAGTTATACACCAA ATTGCACAAACATCAAGAAGAACCTGTACAGTAAGCATTCGGGTTTACCCGCCACTTGGTGTTCATTTTCCCAATGGCTT CATATGATTTTTCTTTTTCTTTTTTTCATGTCTACTTTCATAAGTTTTACATTGTTTTAACTTTTCCAAATCAAAAATTG AGAACAATGCAAATAGTGAACGATTATATTTGGTGATGTCTTAGAAGGCCACTGCATTTGATCATAATGTGCATTTTTGG ATGTTATTATATATTACATTATGACATGAAAATGCCAATTGATACCAGATACTGTTGAAAGTTTATCTCCCACTTCCAAA CCTAGTTGTTGGTGTTGTCAGTTATCAGTTATCAGTTGTAGCATATGTAGCCTAAGCCTTTAACTATTCATAATTTGAGG TATTGATTTACTGATATACATGTACTTGACTACTTGTTTAGATTTGCTTGAATCTCGGTCTCTCTTTTTTACCGTGTAGC GAGAGCTTTTATCCTAAACATTTTTATTATGCATGTGCGTTGTGTTTTTTTGAACTTATTAAGTACTATCAAACTGATTT CACCAGTAATAGATTATGCTAATAGGTTTATTTTTTGCCTTTGCTATCCTTTAATTTCACAGATGCTATATATGCCTTGT GGAGTATGAAGATGAAGACAGCTTGCGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGA AGGAGATTCATAGGTACGTAGGGTTAAGGATTTGGGCGTTCTTCTGGTTAACAATATGGTTAAAAAGTTCAAATTATATT AAATTCCTTATTATTACATATATTCCTGCTAGTTTACTGCGGTTGTGTAATATATACATATTTAGGGCTTTGGAATCTAT CTAGTAAGAGGCACATAAGAATACAGAACGTGGGTGAGTGAGTTTTGCATATTTTGAATGAGAGGCACTTTAGTATAGTA AACTATAAAGCTGGTATACACTAAATACGTGGAAAACCATATGCTGGGTTAACTTTGGATATTGGCAAAACTGACTGATA GAATGTTTGGAAATCCTGACAGTTGATTTTAGAGATCAAAATCAATTATGGGGAAAAGTTTTTGTGGGTAGCTTTTAGGT GTCAGAATTGATTCTGAAGAAAAATAAGCTGATCTTCAAACATGTTATGAATGTTGCGCATTTGTACGGGCATCTGCCCT ATTTTCTAGACATTATCAACCTGTGGTCAAACCCCATGATGCTGATGGATGTGAATGACTTAAATGGCCTTCTGACAACT TGATCTTATGCATTTCCTTCGTTGTTTTTGAATACGGCAATTCATTTCATATGAACAACTTCAAGAGATCCCTACTGTAA CAATTGGTGAAATTCTCACTTATCTTTAAATTCAGCTGTTCATACCCTGATGTTTCATTTTTTGCCATATACATATATGA CATAATCATGTTAGTAAGTTTACATGGGCCAGGGAATGTGTATCTTTCTTAACCTCTGTATATTATACACAGGGTTTGCC CACTATGTCGGAGGGACATTTGTATACCTGATTCACTGCCAACGGAGAACTAAAGTGGCAATTTGTTAAGCAGCATATCC TCTTGAGGCTCATAGCTCCTTGGGAAAAAATGTACTAAAGTATTGCACACACACACACATGTGACTATCAGAAGAAGCTC AGTCCTTTCTGCTAGTATTCTCATTGTTGTCCATGATAATGATTATTGATTCCAAATCCTGAATAAACATCAAACCATGG TAGAAATAGACTGAACTACTAGCTCTCTCTGTCTTTGAAACAGGGCACAAAAAAAGTGGGGTGGGGGCTATTGTTTGATG AGGAATATTGCCAACATGTTTCAGCAAGAAAAGGGACCTTTTGTTTCACCCAACTTGTTAACACACACAATTCCGTAAAA AGAGGGGGGAAACCTGAAAAGTATTAGTCAAATGAGCGTTTTTTTCATCATTGGTGAAATTGCTGATTTGCATAGCATCT TTGACTGAAGCATTCTCTTTATGTAGACCACTTAACCAAGTGCTTGAAAATAATAAACGGTTGTGCACGCTTGTGACATC CTTTTGACTTTTCAGAGTTAAAAAAAGGTAAAGGGAAAGAAGACATTTGAATAGCAGGGTAAGAATAGATTTGTAATGTT GTCAAGGTTATTGAGTGAGACAAGTGCTAGTGTTTTCTGATTGTCTCCTAACCGACCTTAAAGACCAACTAGATTCTGCG ATTTGGAGTACAACTTTGTCTGCCTCGTGTGCTTTTTATTGTCTGGTTGCTGTTGCCATGTAGAATCATTATTTGCTTCA AACAAGAATTAGGTCCTCGGGTGGAAACTTCACTTGATAATGTCATGTTGAAATTCGCATCTCTAGTTCTTT
CDS sequence (LotjaGi2g1v0346500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCCAGTGGCAGCAAAGCTTCTTCCTCCTCTTGCAGTTCATCGTCGTCTTCCGGTAGTTTCCGGAAGGGTCGATC CAAGAGGCATAGAGGCTTCCCATCTTATTGTCTTGGAAGTGCATCTGGATCTCGTGACAGTGATAATGACGACCAGGTTT GTGATCAGAATAAAGTGAATGGAAGTGATGCCACATTCACCAGTGGCAATGAAATAGACTCAGGTGAAGTGAAAACAGAT TCTTTCAGAAAGGTTAAATCTGATGAATTGCCTTGTATGCCTTCAAACACTGACCTTGATGAGTGTGGCCATGCTTCATC CAGAACTGGTAGCAGCTCTGTCCATGGTTCAACTCAGTCCGTGAACCCTTCAAGCAGATTCCTTTCTCGATTTAGCCTCA TTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACTAGTTTGGGGTCATCTAGACCTTGCCCTGTTTCTTCAGCAAGT CTCTCAATATTTAACAATGAAGATGAGCTGAATCTGAATCCAGGGCCTCCTAGCAGCTTGATTAATAGAAACGAAACTCA ACAATGTAGTGACTTGCTTAATGCATCTTTTGCCAATCGAGTGCCTGTACAGTACCATGAAGAGGCTTCTAATAATATAA GTTCTAATTCCCCAACATTGGGTTTGGTTGGCAACTTGCAGAGCAGTTCCACACTTTCTCCTATCCAGGATGTGATTGGA GATGGGAACTTGTTCTCTCCAAGAATTCATCCTGAGACAGAAAATGTTGAGGCTAGACATATGGATAGACGAAATGCCGC TCGAGAACCTGTTGAACGCAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGAT CAGCAATATCTGACTTCACCTTATGCCCTCTGCAACAAGAGAGAGAAGTGACAGATACTAGTCAGAATAGTGGAAGACAA GTAGGGGAGAGTGATACAAGAGTGTCCCCGTCAGGTCGTCATGCTGCAAGTTCCCGTATTGCATCTGGGTATCCTCTACC CGGCATGTCTAGCTCCTTGTATAGCACCCAAGATTATGCGGTTGAGACTTCACGGTCAAGAGAAACAAGGTATCAGGATC TACTGGAACACAGGTCCAATTTCCTTGAACGGAGAAGAAGGATACGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGC CGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTCGGTGTACATGTAGAAT AAGTGGCCGTGATAACAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCACGAATTGTTATGCTAGCTGAAGCCT TGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCCCGTCCTTCCGTGTCTTCTATTGGATCTGTT CCTGCACCTAACGAAGTTGTGGAATCCTTGCCTGTCAAGTTATACACCAAATTGCACAAACATCAAGAAGAACCTGTACA ATGCTATATATGCCTTGTGGAGTATGAAGATGAAGACAGCTTGCGAGTACTGCCTTGCCATCATGAATTTCATACAACAT GTATAGACAAGTGGCTGAAGGAGATTCATAGGGTTTGCCCACTATGTCGGAGGGACATTTGTATACCTGATTCACTGCCA ACGGAGAACTAA
Protein sequence (LotjaGi2g1v0346500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSGSKASSSSCSSSSSSGSFRKGRSKRHRGFPSYCLGSASGSRDSDNDDQVCDQNKVNGSDATFTSGNEIDSGEVKTD SFRKVKSDELPCMPSNTDLDECGHASSRTGSSSVHGSTQSVNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSAS LSIFNNEDELNLNPGPPSSLINRNETQQCSDLLNASFANRVPVQYHEEASNNISSNSPTLGLVGNLQSSSTLSPIQDVIG DGNLFSPRIHPETENVEARHMDRRNAAREPVERNVRFSRTLSVGRLRDRVLRRSAISDFTLCPLQQEREVTDTSQNSGRQ VGESDTRVSPSGRHAASSRIASGYPLPGMSSSLYSTQDYAVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGS RFENLSGHDRSCILSGQHRNGRCTCRISGRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSV PAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDEDSLRVLPCHHEFHTTCIDKWLKEIHRVCPLCRRDICIPDSLP TEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 563 | 563 | 1.6E-280 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 563 | 563 | 1.6E-280 | – | |
| MobiDBLite | 1 | 123 | 123 | - | – | |
| MobiDBLite | 54 | 75 | 22 | - | – | |
| MobiDBLite | 100 | 123 | 24 | - | – | |
| MobiDBLite | 307 | 336 | 30 | - | – | |
| MobiDBLite | 307 | 348 | 42 | - | – | |
| Gene3D | 471 | 555 | 85 | 2.5E-20 | ||
| SUPERFAMILY | 486 | 556 | 71 | 1.72E-19 | – | |
| Pfam | 507 | 550 | 44 | 8.6E-12 | ||
| CDD | 507 | 550 | 44 | 2.63463E-19 | – | |
| ProSiteProfiles | 508 | 550 | 43 | 12.947 | ||
| SMART | 508 | 549 | 42 | 3.3E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0346500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…