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LotjaGi2g1v0348800.1

Overview

Field Value
Gene ID LotjaGi2g1v0348800
Transcript ID LotjaGi2g1v0348800.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT4G19220.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protein At4g19220, mitochondrial; TrEMBL-Plants: tr|A0A1J7I7J8|A0A1J7I7J8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0348800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:82560600..82567319) extracted from Lotus japonicus Gifu genome v1.2.

TCTACTGCTTTGCATGGACATCGTAATGCCCAAGTTGTCAGATTCATGTCCCTCAATGCAAGACAGGATTTTTCATAGCT ACAATCAAGAAACAAGTGAAAATGAGAACATGGGTAAAGCACATAACAACATGGGATGTTCAAAATTTAGTCCTTCTTCG AAAAAGAAGATCACCTTCATTCCGTTCATTTTCTTCACAGAACTACTTAAATGGAAGTTTCAGCAATGTTCAGAGACACA TGGTTCATATTCTTCGATATGCTCCTGCCCTTTTGTCATGTTGTTGTCATCGTTTTTGCACTGGCATTCAGCTGTTTGAT GAAATGCCGCAAAGGGCTCTGCATGTAAGAGAAAACCATTTTGAGCTTGTTGTGGATTGCATTAAATTGTGCCTGAAAAA ACCCAACATTTTGACTGTCACTGTTGCTCATTGTGCAGCTGTAAAGATAGGAGTTCTAACTCATCTCCCCACTTCAACAT CTCTACTCACTGCTTATTCTAAGGCTGGAGACTTCACCTCTTCCAGGGATTTGTTTGATGAGATTACGAACAGGGATGTG GTTGCTTGGAATGCTATTATTGCAGCATCTCTTGTAAATAACTGCTATATGACTGCAATGGAATTTTTTGAAAAAATGAT CAAGGCCCAAACTGGGTTTGATTCCACCACTCTATTGCTTATGGTATCAGCATCGTTACATGTGAAAAACTTCGATCAAG GACGGGCAATTCATTGTGTGAGTATAAAACATGGGATGCTTGTGGATGTAAGTTTAGGTAATGCTCTTATTGACATGTAT GCTAAGTGTAGTGACCTAAGCTCTTCTGAGCATCTGTTTGAAGAGATGGAGTATACAGATGTTGTTTCGTGGAATTCAAT AATGAGAGGAAGTCTTTACAATGGTGATCCTGAGAAATTATTGTACTACTTCAAAAGGATGACTTTATCTGAAGAAATCG CTGACCATATCAGTCTATCTTGTGCTATTTCAGCTTGTTCAAGTTTGAGAGAGCTGGCTTTTGGCCAGACCATTCACGGG CACGGAATCAAGCTAGGTTACAATGACAGCTCGCGTGTTTCAGTAGCGAACTCGCTCATTTCCTTGTATTCACAATGTAA AGACATTGAGTCTGCTGAGACTGTATTCAGAGAAATAGCATACAAAGATATTGTTTCCTGGAATGCAATGCTAGAAGGAT TTGCTTCAAATGAAAAGATTAATGAAGTATTTGATATTCTGGTTGAAATGCAAACAACAGGATCTTTCCGACCTGATATA GTAACATTGACTACCATACTTCCAATTTGTGCACAACTCATGCTCTCCAGAGAAGGAAAAACTATCCATGGATTTGCAAT TCGAAGACAGATGGTATATGATCATCTTCCTTTGCTGAACTGCCTCATAGACATGTATTCAAAGTGCAACCTTGTGGAGA AAGCAGAGCTCTTGTTCCATTCTACTGCTAAGAGAGACTTGGTCTCATGGAACACAATGATATCTGGCTATTCCCAGAAC AAGTATTCTGAAGAAGCTCAATTTTTTTTCAGAGAGCTGCTACGGCGAGGTCCAAATTGCAGTTCATCAACTGTTTTTTC CATTCTTTCTTCCTGCAACTCCCTTAACGGTCTCAACTTCGGAAAATCAGTTCACTGCTGGCAGTTAAAATCTGGTTTTC TGAACCACATTCTTTTAATAAATTCTCTCATGCACATGTATATCAATTGTGGAGACCTCACAGCCAGTTTCTCCATTTTG CATGAGAATTCAGCTTTAGCAGATATTGCTTCTTGGAACACTGTAATTGTGGGCTGTGGGCAAGGTAACCATTATCAAGA ATCTCTAGAGACTTTCAGGTTATTTAGACAGGAACCTCCTTTCGCCTATGACTCCATAACCCTTGTAAGTGTCTTGTCAG CTTGTGCCAACCTGGAACTACTCATCCAAGGAAAATCTCTCCATGGCCTTGCCCTTAAATCTCCTTTGGGATCAGATACT CGAGTTCAGAACTCATTAATTACCATGTATGACAGATGCAGGGACATTAACAGTGCCAGAGCAGTGTTTAAATTCTGCTC TACTTCCAACCTATGCTCATGGAATTGCATGATCTCTGCTTTATCTCATAATAGAGAATGTAGAGAAGCATTGGAACTAT TTCGTCATCTTCAGTTTAAACCAAACGAGTTCACCATGGTTAGTGTTCTTTCTGCTTGCACTCAGATTGGTGTCCTAAGA CATGGAAAACAAGTTCATGCCCGCGTGTTCCGGTCCGGGTTTCAAGACAATTCTTTCATATCATCAGCTCTTGTAGATTT GTATAGCAACTGTGGAAGATTGGACACTGCTCTCCAGGTGTTCAGACATTCAGTGGAGAAGTCCGAATCGGCTTGGAATT CAATGATTTCTGCATATGGCTATCATGGAAATAGTGAGAAAGCTATCAAACTCTTCCATGAGATGTGTGATTCAGGAACA AGGGTGACCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGCCATTCAGGACTTGTGAACCAAGGTCTTTTGTACTA TGACTCTATGTTGGAGAAATATGGAGTTCAACCTGACACTGAGCATCATGTTTTCGTGGTTGACATGCTAGGGAGATCAG GTAGACTGGATGATGCTTACGAATTCGCTAAGGGGTTACCATCCCATGCGAGCTCAGGTGTATGGGGAACGCTTCTAAGT GCATGCAACTATCATGGAGAACTCAAGTTAGGGAAACAAATTGCTGAACTTCTCTTTGAAATGGAACCTCAAAATGTTGG ATATTACATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACTGACTTGAGACAATCTATCCAGG ACCAAGGATTAAGGAAAGCAGCAGGTTATAGTCTTATTGACGTTGGTGTGGGATAAGAGAAGGGAAGACTATAGTTTTCA AGGCCAAGAAATTTCACCAAGAATTGAAAACGTTTGAGGTAAAAATCTTTATTTAACATGGTCCAATATGTAATGATATA TCACATGGACTTTAGCTTATTTCTTGAGATGAATCCGAACGTTTCATTGGAATACAACTAATCTATGTCAAACTGGATTA ATCTACTTACAATGTGTTAGGAACCTAGATCCTAACAATTGAGAACTGTAAAGAAAGTGTAAGAACTGAATTGATAGATT GCTTATTTGATGATAAAAAGGGATTACAACAGAAAGGGAATGGAATCCGATTCTGACACAGAGCTAGGCTCCTATAGGAA GCTCAAAGCTTCCTACTCATATCTCTACTTAGCTTAGAATCAAGATACCCTCTCAACCTTTCCTTCCTCCCTTTATATTG TTAGATGGTCATTACAATCATAATCCTCTCTCTCTCTATTCTGTTAGGGAGTTACTAGTAATCCCCACTTTGCCCCTTCT AGAATGCACTATCCATATTCCTTGGTTGAATAATGAATCAAAGGCTCCTTAGTGACATTTGGGCCTGCTTGGAAATCCCA GGGCCTAACAATACCACCTGCTGAAAGATCAACCTTGTCCTCAAGGTTGAAAGATGGGAATTGACTCTTGATAGTGATGT TGTCTTCCCAAGTAGCTTCATCGAACTGGCCTGTGCTTGGACATAAAGAAGTCTCAGACATTCTCTCCTTCAACTTGCCC CCTTTCTTACCAAGTACAGAAGGTTCTTCTTGTATAAGTGATGAGCATCGCACTACACTATGAGCCTCCTGATAATGTTT GTTGACGAGTTGAGAAAACTTATCCCAAGATAACTCTTCCAATTCGTTATCCTGAACCTCATTTCTCCCAATGCCAGGAG AAGTGAATAATGATTGTGATTCGCCAAGCAACACCCTTAGAAGATGTACATCCTCCTCATTTAGAAAGTTCGTAATCAAA GATTCTGCATAACTTAGTAAAGGGCGTAGATTCTTGCTGACAGAGGCAGCTTTAGGAACATCAGAAGCAAACGAAAACCC AGGCAGCAAATTAGATAGATCCATTTGCAAGTATTCCAGGACCCTGAGAACAAAAAGGTTCATCTCTTGTGCTTCACATA TGTTGGGAACCAAACAATGAAGATTTGCAATGATTCGTAGATCCTGTGATGAAGTATTACCCAGAACCCGCCCAACACCA AATCGTGTGCTTGTAGTGTGGAATGCAGCAGCACTGTCAGCTTGTCTAATGAAAGTCTCAGCCAATTCAGAGTCTTCTGT AACCATGCATTCAGTATGAGCACTTCCATGGTTATTGATGTGGTCAATGGCCGCAGACACACCTTCTGCAATTACAACCG TGCAAGCAATTGAGCTGTCCTCAAGATGAAAAGTGCTCGTCTCAGAAATTTTTAGCAAGGCACTGGCTTTTGTTCTGCCA AACAGCTGAACACCTTCACGATGGAGTTCAAGGGTGAGCTCATTAAGTCCACCAATACATGACAGTCCCTTGTGTCCCAG AAGAGTTTCCATTGCATTGCCAGCTGCGGGGTAATCAGTATCTGCATCCCTAACAGTCTGCTTTTCCATATTATTATTAG CAGACCTGTCAACATATACACTACAAATTCCATCAGCATGTCCAAGAACAGGAACTTTTGTTGATTCCTTGATTTGAGGA ACAAGCTTATTACTGCCTCTAGGAGCCCTAAGATCTATCACTTCATCAAGCTTCCATAGCTCTGGAATTTCATCTCTTGA AGTCACAAGACCAAAAAGTTTGTCACGAGACCTACCCTCTGTCCCAAATTCGTTGTATTTGGCATTCTCAGGTGATTGAA ATCTGTGCTTTCTCATGGATGCCACTACCACCTGGCATATACGTGTGGGGAGGCTGCCTCCAGGCTTCTGATTCCGATAC AAGCTCGTTCCAGAAAAGAAACTCACCTCTGCAACAACCATAGCCACTGCTGGATTGTTAAAATTCCTCAGACTCAGCTC TCCATCATGACCTTCTTCTTGTTCGTTTACCTCTCTGGCAAGAACGTTTCCCTCTGCAACTTCTTCACCGTCTTCCTCAG GTAATTCTGGTTTTGCTATAGACCCGTTTTCCTTTGGTCCTTTGACCCAGTCCCAATCGGATCCTCCTGTGTGACCCGAC CCCGTAAATCCGGTTGTGTGGAATTCTATTGGGCCTTGGTGCTCTATGTTAAATAGTAAATCCACTATATTCTTTTCCTT CCTTCTTTTTGCTGGCAGTGAGCAGAACTCCTTGGTTTTTATTTCTTTTCCTTGTTGGGCCAGGCCCATTAAAAGGAAAA ATACACCCAACCCGTTTTGCTCTTGACGTTCCCCATCTCTTGCGGTGAGATGTTGTGCGCCTTCCACAACCTTCCCTCTC CTTCCCGATGCCGGCGCGCCGTGGGTCTCTAATTTCGCCGCCGCCGTACGCGCTCGGTGCGCTACCGTGTGACGATCTGA GTCCGGCGGTTTTTGTGGTGGCCGCCCTTCCCAATCGTACCCTAAATCGCTGATCTGAGCCTCCACGACTGATTCTCCCT TCTTCTTCCCTTGAATGTTGCCGATCTGCAACTTCTCCATTGACGATCCTTCGAGAAGCTTCTTGAAGACGATGACCTCC TCTTGTCTCCCCAACGCTTCTGCTGTGGCTTCCTTCCCCGTTGTCGGAGACTTAAGTTCGGCTTCCGCCACCGTAACAAA CGCTGAGTCTTTCCGCGACGCTTCCCTCTCGGTCTTCTCCGGTGAATTCGCCTCAGGTTTTGCTTCCTCCTCTGAAACTT CTCTGTTCTCCAAGCTTTCCTGCTCTGAAGAATCTAGACTTGGTTCTGGTAGGTATTGCTCTCGCCGTTCTTCCTCCGCT GCTTCATCGGGAATCTCCTTCCCCTTCGATCGCTCTATCATCAGCGCCAACGATGAAGGTAGATCCTTCACCGCCGTCGT GATCGCTGCTAACGCCGTTCGCACCTCAGCGAATTCGTTCGCCAACGCGTCGAGTTTCGCCTCCATCTTGGTCGCTGTTT GCTGGTTCCGGCGAAGAACATCCGTCAAAGCGAATCCGGCAGGTCGGACCATTTTGTTAGGAACCTAGATCCTAACAATT GAGAACTGTAAAGAAAGTGTAAGAACTGAATTGATAGATTGCTTATTTGATGATAAAAAGGGATTACAACAGAAAGGGAA TGGAATCCGATTCTGACACAGAGCTAGGCTCCTATAGGAAGCTCAAAGCTTCCTACTCATATCTCTACTTAGCTTAGAAT CAAGATACCCTCTCAACCTTTCCTTCCTCCCTTTATATTGTTAGATGGTCATTACAATCATAATCCTCTCTCTCTCTATT CTGTTAGGGAGTTACTAGTAATCCCCACTTTGCCCCTTCTAGAATGCACTATCCATATTCCTTGGTTGAATAATGAATCA AAGGCTCCTTAGTGACATTTGGGCCTGCTTGGAAATCCCAGGGCCTAACACAATGAGTCTGGATATGCCTTCACTTAGCT CAGAATTGATTATACTCCCTAAAAGCTAAGGGTTAAAACTGTCACAGACTTACTATTTCCGTTCATAAGGCCTCAATCCA AGATTTTAGTTGAGTGAACCAAGTTGCTTACCACTTGAAACCAATAAACAAGAGACATTTTTATTCTTATATCAGATTAG ATATTTATTTGGGCGAGGGTCAAAAACCTCACAGGCCAACAAATTAAGGGATGTATTTGGGCGAAAAATTTATTCAGATC 

CDS sequence (LotjaGi2g1v0348800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGCAATGGAATTTTTTGAAAAAATGATCAAGGCCCAAACTGGGTTTGATTCCACCACTCTATTGCTTATGGTATC AGCATCGTTACATGTGAAAAACTTCGATCAAGGACGGGCAATTCATTGTGTGAGTATAAAACATGGGATGCTTGTGGATG TAAGTTTAGGTAATGCTCTTATTGACATGTATGCTAAGTGTAGTGACCTAAGCTCTTCTGAGCATCTGTTTGAAGAGATG GAGTATACAGATGTTGTTTCGTGGAATTCAATAATGAGAGGAAGTCTTTACAATGGTGATCCTGAGAAATTATTGTACTA CTTCAAAAGGATGACTTTATCTGAAGAAATCGCTGACCATATCAGTCTATCTTGTGCTATTTCAGCTTGTTCAAGTTTGA GAGAGCTGGCTTTTGGCCAGACCATTCACGGGCACGGAATCAAGCTAGGTTACAATGACAGCTCGCGTGTTTCAGTAGCG AACTCGCTCATTTCCTTGTATTCACAATGTAAAGACATTGAGTCTGCTGAGACTGTATTCAGAGAAATAGCATACAAAGA TATTGTTTCCTGGAATGCAATGCTAGAAGGATTTGCTTCAAATGAAAAGATTAATGAAGTATTTGATATTCTGGTTGAAA TGCAAACAACAGGATCTTTCCGACCTGATATAGTAACATTGACTACCATACTTCCAATTTGTGCACAACTCATGCTCTCC AGAGAAGGAAAAACTATCCATGGATTTGCAATTCGAAGACAGATGGTATATGATCATCTTCCTTTGCTGAACTGCCTCAT AGACATGTATTCAAAGTGCAACCTTGTGGAGAAAGCAGAGCTCTTGTTCCATTCTACTGCTAAGAGAGACTTGGTCTCAT GGAACACAATGATATCTGGCTATTCCCAGAACAAGTATTCTGAAGAAGCTCAATTTTTTTTCAGAGAGCTGCTACGGCGA GGTCCAAATTGCAGTTCATCAACTGTTTTTTCCATTCTTTCTTCCTGCAACTCCCTTAACGGTCTCAACTTCGGAAAATC AGTTCACTGCTGGCAGTTAAAATCTGGTTTTCTGAACCACATTCTTTTAATAAATTCTCTCATGCACATGTATATCAATT GTGGAGACCTCACAGCCAGTTTCTCCATTTTGCATGAGAATTCAGCTTTAGCAGATATTGCTTCTTGGAACACTGTAATT GTGGGCTGTGGGCAAGGTAACCATTATCAAGAATCTCTAGAGACTTTCAGGTTATTTAGACAGGAACCTCCTTTCGCCTA TGACTCCATAACCCTTGTAAGTGTCTTGTCAGCTTGTGCCAACCTGGAACTACTCATCCAAGGAAAATCTCTCCATGGCC TTGCCCTTAAATCTCCTTTGGGATCAGATACTCGAGTTCAGAACTCATTAATTACCATGTATGACAGATGCAGGGACATT AACAGTGCCAGAGCAGTGTTTAAATTCTGCTCTACTTCCAACCTATGCTCATGGAATTGCATGATCTCTGCTTTATCTCA TAATAGAGAATGTAGAGAAGCATTGGAACTATTTCGTCATCTTCAGTTTAAACCAAACGAGTTCACCATGGTTAGTGTTC TTTCTGCTTGCACTCAGATTGGTGTCCTAAGACATGGAAAACAAGTTCATGCCCGCGTGTTCCGGTCCGGGTTTCAAGAC AATTCTTTCATATCATCAGCTCTTGTAGATTTGTATAGCAACTGTGGAAGATTGGACACTGCTCTCCAGGTGTTCAGACA TTCAGTGGAGAAGTCCGAATCGGCTTGGAATTCAATGATTTCTGCATATGGCTATCATGGAAATAGTGAGAAAGCTATCA AACTCTTCCATGAGATGTGTGATTCAGGAACAAGGGTGACCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGCCAT TCAGGACTTGTGAACCAAGGTCTTTTGTACTATGACTCTATGTTGGAGAAATATGGAGTTCAACCTGACACTGAGCATCA TGTTTTCGTGGTTGACATGCTAGGGAGATCAGGTAGACTGGATGATGCTTACGAATTCGCTAAGGGGTTACCATCCCATG CGAGCTCAGGTGTATGGGGAACGCTTCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTAGGGAAACAAATTGCTGAA CTTCTCTTTGAAATGGAACCTCAAAATGTTGGATATTACATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAA AGATGCTACTGACTTGAGACAATCTATCCAGGACCAAGGATTAAGGAAAGCAGCAGGTTATAGTCTTATTGACGTTGGTG TGGGATAA 

Protein sequence (LotjaGi2g1v0348800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTAMEFFEKMIKAQTGFDSTTLLLMVSASLHVKNFDQGRAIHCVSIKHGMLVDVSLGNALIDMYAKCSDLSSSEHLFEEM EYTDVVSWNSIMRGSLYNGDPEKLLYYFKRMTLSEEIADHISLSCAISACSSLRELAFGQTIHGHGIKLGYNDSSRVSVA NSLISLYSQCKDIESAETVFREIAYKDIVSWNAMLEGFASNEKINEVFDILVEMQTTGSFRPDIVTLTTILPICAQLMLS REGKTIHGFAIRRQMVYDHLPLLNCLIDMYSKCNLVEKAELLFHSTAKRDLVSWNTMISGYSQNKYSEEAQFFFRELLRR GPNCSSSTVFSILSSCNSLNGLNFGKSVHCWQLKSGFLNHILLINSLMHMYINCGDLTASFSILHENSALADIASWNTVI VGCGQGNHYQESLETFRLFRQEPPFAYDSITLVSVLSACANLELLIQGKSLHGLALKSPLGSDTRVQNSLITMYDRCRDI NSARAVFKFCSTSNLCSWNCMISALSHNRECREALELFRHLQFKPNEFTMVSVLSACTQIGVLRHGKQVHARVFRSGFQD NSFISSALVDLYSNCGRLDTALQVFRHSVEKSESAWNSMISAYGYHGNSEKAIKLFHEMCDSGTRVTKSTFVSLLSACSH SGLVNQGLLYYDSMLEKYGVQPDTEHHVFVVDMLGRSGRLDDAYEFAKGLPSHASSGVWGTLLSACNYHGELKLGKQIAE LLFEMEPQNVGYYISLSNMYVAAGSWKDATDLRQSIQDQGLRKAAGYSLIDVGVG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 145 145 6.9E-19
PANTHER 3 132 130 1.3E-151
ProSiteProfiles 18 52 35 5.141
ProSiteProfiles 53 87 35 8.484
Pfam 58 81 24 0.029
Pfam 86 111 26 0.11
PANTHER 125 246 122 1.3E-151
Gene3D 150 239 90 6.5E-15
ProSiteProfiles 156 186 31 6.741
Pfam 161 183 23 0.015
Pfam 186 232 47 2.6E-8
ProSiteProfiles 187 221 35 9.372
TIGRFAM 189 223 35 3.3E-4
Gene3D 240 343 104 2.1E-14
PANTHER 242 337 96 1.3E-151
ProSiteProfiles 259 289 31 6.226
Pfam 264 284 21 0.033
ProSiteProfiles 290 324 35 10.424
TIGRFAM 292 321 30 0.0019
Pfam 292 321 30 5.5E-7
PANTHER 319 449 131 1.3E-151
Gene3D 344 452 109 3.7E-8
ProSiteProfiles 392 422 31 7.607
Pfam 395 419 25 0.26
PANTHER 447 549 103 1.3E-151
Gene3D 456 573 118 4.0E-16
ProSiteProfiles 463 493 31 5.579
ProSiteProfiles 494 524 31 8.374
TIGRFAM 497 522 26 3.4E-4
Pfam 497 521 25 6.2E-5
ProSiteProfiles 526 560 35 6.939
PANTHER 545 753 209 1.3E-151
ProSiteProfiles 561 591 31 7.662
Pfam 566 587 22 0.99
ProSiteProfiles 592 626 35 11.257
Pfam 593 639 47 3.5E-10
TIGRFAM 595 625 31 7.8E-8
ProSiteProfiles 627 662 36 7.947
TIGRFAM 630 664 35 0.0011
ProSiteProfiles 663 693 31 5.908
ProSiteProfiles 729 763 35 7.278

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0348800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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