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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0350700 |
| Transcript ID | LotjaGi2g1v0350700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G31790.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C6R9|PPR66_ARATH Pentatricopeptide repeat-containing protein At1g31790; TrEMBL-Plants: tr|I3S038|I3S038_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0350700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82719693..82721441) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTTTATGTTATTTTATTATATAAAGTGTATCTGAAAAAAAATAGGCAGGAGGTTCCCAAAAAGGAAAGACTGTGAT GACAGAAAGAATAACATATCATGTTGGGTGAATCCTATGTTGTCTGTGTGTGTATACTATATCCAGTTGAGAAATGGAAC TCCTCGTTGCTCCGCCGCCAACAGCACCCACCCGCTTTGCTGATAGCAACCCAACTACTTGTCCTCCTCCCAACCACCAC CACCACCACCACCTTCGACTACCCTTCCTCCGCAACCCCAACCCCAAACACAACCTTTCTCTCTTCCCTCCTCACACTCC TTCACCATCCCTCACTCCTCAACCCACTCCTTGTAGGGACAACTACTACTACTACGACAACAACAATCATAATATGAAGA AAAAGAAGAAGAGGAAGAGAAAAGGAGCTACAACCTCACACATCTTGCATTTGATGGATGCTCTGCCTTTTCCTATACCC ATTGACATCTACACCTCTTTGATCGAAGAATGCACTCTTTCCCCTGACCCACAAACCGCCATTGAGCTCCACACCCACAT CGCCCACAGCGGAATCAAACCCCCCTTGTCCTTCATCAATCGAATTCTCGTTATGTTCGTTTCGTGCGGTCTGTTGGACT ATGCATGCCAACTGTTCGACGCAATGCCCGTGAAAGACTTCAACTCGTGGGCAACCTTGTTCATTGCTTACTATGACAAT GCTGATTATGAGGAGGCCATAGATGTTTTTCTCGCCATGCTACACCAATTGGGCATGTCGGAATTCCCTCCGTGGATCTG TGCTTGCCTTCTCAAGGCATGTGCCTGCATTGAGAATATCCCTCTAGGGATGCAGGTTCATGGATGGTTGTTAAAGTTGG GCGCTTGTGACCATGTGCTTCTCAGCAGCTCCTTGATCAGATTTTATGGGAGGTTCACGTGTGTTAAAGATGCAAACGCT GTGTTTAATAAACTATCGCGGCATAACACGTCAACCTGGACGGCTAAAATTGTGAGCGGTTGCAGGGAAATGGATTTCCC AGAGGTTTTTAATGACTTCAAGGAGATGGGAAGGCAGGGAATAAAGAAGGACACTTATACGTTTTCCAGTGTTCTCAAGG CATGTGGGAAAATGATGGATCATGGACGCTGTGGCGAACAGGTCCATGCTGATGCCATGAAACTCGGGTTGGCCTCTGAT AACTATGTGCAGTGTAGTTTGATAGCCATGTATGGAAGAAGTGGGTTGCTAAGAGATGCCAAACAGGTTTTTGAGACGAG CCGAAGTGAAAGGAATGTTGATAGTTGGAATGCCATGCTTATGGGTTACCTAGAGAATGGTTTGTACATTGAGGCTGTTA AGTTTCTGTATCAGATGAAGGCAGCTGGATTGAAACCCCATGAATCTTTGCTTGATAAAGTAAGAATTGCCTGTGGCAGT GTTACCTACTCAAGCACGAATTAACTAATAGCATGTTTGGATTTTAACTTTTATTTCCCCTAAATCAATTTTGACGTCCA TAAGCTACTCATAGAGACTTTTCTCCATAATTGATTTTAACTTTAAAATCAATTTTAGAGGGATTTCTAAACATGCATCA AGAAGAAGATACATAGACTATACAGAAATGAATAATGTAAAGTATTTGCTTAAAACACTCGAGCTTCTGGCTAGTGATAC TTACACAATGTAATGTGAGAAAATTTGTTGCACACTTGGTTAAATGGCAAGATATGAAAATTTGTTACA
CDS sequence (LotjaGi2g1v0350700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTCCTCGTTGCTCCGCCGCCAACAGCACCCACCCGCTTTGCTGATAGCAACCCAACTACTTGTCCTCCTCCCAA CCACCACCACCACCACCACCTTCGACTACCCTTCCTCCGCAACCCCAACCCCAAACACAACCTTTCTCTCTTCCCTCCTC ACACTCCTTCACCATCCCTCACTCCTCAACCCACTCCTTGTAGGGACAACTACTACTACTACGACAACAACAATCATAAT ATGAAGAAAAAGAAGAAGAGGAAGAGAAAAGGAGCTACAACCTCACACATCTTGCATTTGATGGATGCTCTGCCTTTTCC TATACCCATTGACATCTACACCTCTTTGATCGAAGAATGCACTCTTTCCCCTGACCCACAAACCGCCATTGAGCTCCACA CCCACATCGCCCACAGCGGAATCAAACCCCCCTTGTCCTTCATCAATCGAATTCTCGTTATGTTCGTTTCGTGCGGTCTG TTGGACTATGCATGCCAACTGTTCGACGCAATGCCCGTGAAAGACTTCAACTCGTGGGCAACCTTGTTCATTGCTTACTA TGACAATGCTGATTATGAGGAGGCCATAGATGTTTTTCTCGCCATGCTACACCAATTGGGCATGTCGGAATTCCCTCCGT GGATCTGTGCTTGCCTTCTCAAGGCATGTGCCTGCATTGAGAATATCCCTCTAGGGATGCAGGTTCATGGATGGTTGTTA AAGTTGGGCGCTTGTGACCATGTGCTTCTCAGCAGCTCCTTGATCAGATTTTATGGGAGGTTCACGTGTGTTAAAGATGC AAACGCTGTGTTTAATAAACTATCGCGGCATAACACGTCAACCTGGACGGCTAAAATTGTGAGCGGTTGCAGGGAAATGG ATTTCCCAGAGGTTTTTAATGACTTCAAGGAGATGGGAAGGCAGGGAATAAAGAAGGACACTTATACGTTTTCCAGTGTT CTCAAGGCATGTGGGAAAATGATGGATCATGGACGCTGTGGCGAACAGGTCCATGCTGATGCCATGAAACTCGGGTTGGC CTCTGATAACTATGTGCAGTGTAGTTTGATAGCCATGTATGGAAGAAGTGGGTTGCTAAGAGATGCCAAACAGGTTTTTG AGACGAGCCGAAGTGAAAGGAATGTTGATAGTTGGAATGCCATGCTTATGGGTTACCTAGAGAATGGTTTGTACATTGAG GCTGTTAAGTTTCTGTATCAGATGAAGGCAGCTGGATTGAAACCCCATGAATCTTTGCTTGATAAAGTAAGAATTGCCTG TGGCAGTGTTACCTACTCAAGCACGAATTAA
Protein sequence (LotjaGi2g1v0350700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLVAPPPTAPTRFADSNPTTCPPPNHHHHHHLRLPFLRNPNPKHNLSLFPPHTPSPSLTPQPTPCRDNYYYYDNNNHN MKKKKKRKRKGATTSHILHLMDALPFPIPIDIYTSLIEECTLSPDPQTAIELHTHIAHSGIKPPLSFINRILVMFVSCGL LDYACQLFDAMPVKDFNSWATLFIAYYDNADYEEAIDVFLAMLHQLGMSEFPPWICACLLKACACIENIPLGMQVHGWLL KLGACDHVLLSSSLIRFYGRFTCVKDANAVFNKLSRHNTSTWTAKIVSGCREMDFPEVFNDFKEMGRQGIKKDTYTFSSV LKACGKMMDHGRCGEQVHADAMKLGLASDNYVQCSLIAMYGRSGLLRDAKQVFETSRSERNVDSWNAMLMGYLENGLYIE AVKFLYQMKAAGLKPHESLLDKVRIACGSVTYSSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| MobiDBLite | 49 | 63 | 15 | - | – | |
| Gene3D | 87 | 208 | 122 | 6.9E-12 | ||
| PANTHER | 99 | 206 | 108 | 7.7E-35 | – | |
| ProSiteProfiles | 109 | 143 | 35 | 7.256 | ||
| ProSiteProfiles | 144 | 174 | 31 | 5.119 | ||
| ProSiteProfiles | 175 | 210 | 36 | 7.004 | ||
| Gene3D | 209 | 331 | 123 | 1.1E-11 | ||
| PANTHER | 215 | 331 | 117 | 7.7E-35 | – | |
| ProSiteProfiles | 278 | 312 | 35 | 7.509 | ||
| ProSiteProfiles | 313 | 348 | 36 | 7.125 | ||
| Gene3D | 332 | 431 | 100 | 2.1E-13 | ||
| PANTHER | 334 | 427 | 94 | 7.7E-35 | – | |
| ProSiteProfiles | 349 | 379 | 31 | 6.928 | ||
| Pfam | 355 | 374 | 20 | 0.22 | ||
| ProSiteProfiles | 381 | 415 | 35 | 11.378 | ||
| Pfam | 384 | 412 | 29 | 8.2E-6 | ||
| TIGRFAM | 384 | 415 | 32 | 3.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0350700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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