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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0352100 |
| Transcript ID | LotjaGi2g1v0352100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier family protein; TAIR: AT1G20925.1 Auxin efflux carrier family protein; Swiss-Prot: sp|F4HWB6|PILS1_ARATH Protein PIN-LIKES 1; TrEMBL-Plants: tr|A0A151SKJ5|A0A151SKJ5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0352100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82812788..82821949) extracted from Lotus japonicus Gifu genome v1.2.
AAGGCAACAACACTCAGATCTTGTTAGCCAACAACCAAACAACCTTATTACCAATTGCCTTGAGTGATAAAAGAAAAAAA GTATAACATTGAGGTTAGCATCTTTGACAATATGGGCCCCCTTCAGTAGCTGACGCCTGTGTCTAACTCATCTCAAATCA TTAGCATCATTGTTCATATATTAAATCGGATAGGAATGGTTGGATGAAGCAGCTCGTTCATATCCCATTGGCCAATGTAT GTTTATGTGTGTTGGTCCGATATCATCACCATAGGTACTTTACTTTGATCTGTTCATGTAATTTTTTGTTTATGAAGGTC ATGTTTATGTTCAAATGCATGAGTTATGATATGTAGTCTATGATTTTGGTTCTTCTTCAAGTCGACTTTCCATGAAACCA AGTCAATACTAGCATATTTTTCTTCTGAATCAATTCTGATACGCAGAAGCTGCTCATATAAGCTTCTCCCAGAATCAATT GTTGAAGCATTTTTGTGCATGTTTGAGTCATTCACATAGTAACAGAATGGGACTGAAGTTTGTTTTTTCAATAACTGTGA TCTGTGGTTTATATATTTTATGATTTTCCATATGAACATTGTAGTGACAAAAGTGTCTTCTTTTGCAGGTCAGAGTAATT AGCATACAATTTTGGAAGAATTGTAATAATGGGGTTTCTGGATCTTTTTATGGTTGCCTCTTTCCCAGTGATCAAAATAT TGATAATCACTGCAATTGGGTTGTGTCTTGCACTGGATAACATCAATTTACTTGGAAAAGATGCAAGGATACAAGTGAAT CATGTAAGTAAATCCATGAATTCTCAAGAAAGTATCTTTTTTCCTCATTATGTTTCTGTTTATATAGATCTTAGTGACAA CAGTGATTTATCTGTGACAGCTTGTACATTATGTGTTTAATCCTGCACTGGTGGGTGGCAATTTGGCTGAAACAATTACT TCTGAGAATGTAGCTGTGTTGTGAGTGATTGTTCATTTTATTCATATTTTCTATTATATATCAAAGTAGCATACCATAAA CTGTTACTTTTGATTTGAGGATTTGCTTTCTACTTTAAATAATGGTTTGTCACATTTTTTACTATGATTTAGGTGGTTCA TGCCAGTCAATATCCTTGCTACATTTGTGATAGGCTCAGCCTTAGGATGGCTTCTTGTCAAACTCACAAAGCCTCCCAAA CACATTGAAGGTCTCATATTGGGTGTCTGTTCTGCAGGTAGATCTAAAAATTAAGTGTTCCGTTCCTCACTCATAAACCT CAGAATCAATTCTGATAATGTAAAATCAATTTTGGATGTCATTTTGGAGAATTGATTTCAGTCTCAGGATCAACTCTGCT AGAAGCTACAGAGCCTTGAACATAATCATTTGAGATTTTACAACCGGATCTCACAGCATTAACCACAAAAACCAGCTTTT TTTTCAAAAATAAATCCAAACATAAATCAGTTCACTTTCAACTCACAAATACTACAATAATTTTGACAAAATCAATTTTA TCCAAAATCAATTGTGAAAACGCTGTTTCAAATGCATGTTTGGAATCACGGTGGACAATGTTGCAAACCCACACTCTAGG CCCAGATTTGGCAAAGTCTATGAGAGGAGGCCCAAGCAAGGGACAGCTGTACCTGAAGATCCACCTTCTAGAAGCTTGGA TCCCAAGATAACCGACTAATGAGGTGGCAACACACACATGGGTGAGGGGGGGACCATAGGGTATCAACCTAGGGAATATA TGTTGGTTTGGTGAGAGAGTGAGGTAGGCAGAAATTAGTCTGGACTGGGAGAGATTGAGCACTCTCGAATTGCTCAAGTT TATCTTGTTATTTTCTTCCTTGTATTTCCCTAAACACTGCTTCTGGGTTCATACCAGAGGATTCAGTGCCTTAATAGCAT TCAATCTTCTTCTTTCCTATTACATTTTTCTGGTACCTAACATTGGTATCAGAGCTCCCGATCCAAAGGGAGCTTTGTAT GGTACTCACCCGCAGCGCTATGGAGAATCGGGTTGACAACTTGGAGCGTTCCCTCACCGAGATGAAGGAAGTGGCTCACG AACAGTTTGAGGAGCTCCGACGACTCTTCCTGAGTCGTGACAACCGGCGAAGGGGTCGTTCCAACACCCCACGCCATCGA AGAACCTCACGCGATGCGAGCTCAGTCACCGCAAGGAGAAGCGATTTCGGGTCACAACCCGGGTCGCGCTCTTGGTCTCG AGCTGCGACGCACGATCGTGAGCAGCACGAACCCTATCATCACCGTCACCATCTGCGAGCAGTCACGGGAAGGCGAGTCG ACATTCCGATGTTCAACGGAAGCGACGCGTATGGCTGGATAACGAAGGTCGAACGTTTTTTCAGGCTCAGTCGGGTCGAA GAAAGGGAGAAGATCGAGATGGTGATGATCGCCATGGAAGATCGTGCCCTCAGCTGGTTTCAGTGGTGGGAAGAGCAAGC TCAGGAGCGAGCTTGGGAACCGTTCAAACAAGCTCTGATCCGCCGTTTCCAACCGGATCTTGTCCAGAACCCGTTTGGAC CTCTACTCAGTGCCAAACAGAAGGGTAGCGTCATGGAATATCGAGAAGCCTTCGAGCTCTTAGCTGCACCCATGAGAAAC GCTGACAGGGAGGTGTTAAAAGGGGTATTCCTGAACGGTTTGCAGGAAGACATCAAGGCTGAAATGAAATTGTACCCAGC TGATGACCTCGCTGAGCTGATGGACAGAGCACTGCTGCTCGAGGAGAAAAACTCCGCTATGAGAGGAGGGAAACTGAGAG ATGATGACAAACGTGGGTGGAAGGAGAAAGGAGGAACTGGGGGAAGGTATTTTCCCAGTACTGGAGACAACAAGGGGAGG TTTGCTAACTCTGCTGCGAATCACCAAAACAGAGGGGGAACTGGAACTGCTGAAAATGATGGGAAAAATCTTGTGAACAA AGGGGGAACAGGAAGCAATGAAGGAAAAATTCCTGAGAAGAAGTGGAATGGAGGGCAAAGGCTCTCTCAAACCGAGCTAC AGGAAAGAAGTAGAAAGGGGTTATGCTTTAAGTGTGGGGAGAAGTGGGGAAGGGAGCACATATGTGCCATGAGGAATTAT CAATTGATTCTGGTAGAGGGGGAAGAGGAAGAAGAGGAAGATGAGGTTTTCGAAGAGGCTGAGGATGGGGAATTCATTTT GGAAGGAAAGGTGCTGCAATTATCCATGAATAGCAAGGAAGGGTTAACCTCTAATAGATCTTTCAAGGTCAAAGGAAAGA TTGGGAGCAGAGAAGTTCTGATATTGGTGGATTGTGGGGCAACCAGCAACTTCATTTCTCAAGAGCTGGTGGTGGAACTA GACATACCTGTGATTGCCACTTCAGAGTATATAGTGGAGGTGGGAAATGGGGCTAGGGAGAGAAATTCCGGAGTATGTAA GAACCTGAAGCTAGAGGTTCAGGGGATTCCCATTACTCAACATTTTTTCATCCTAGGCCTAGGGGGAACAGAAGTGGTGC TGGGAATGGATTGGCTTGCTAGTCTTGGCAACATTAGAGCAAATTTCCAAAAGCTGACCATTCAATGGGAGGTTCAAGGA CAGAAAATGTTCTTACAAGGGGAACCATCCTGGTGTAAGATTGCTGCAGGATGGAAATCTATTAAAAAGACTATGGAGAA GGAGGGTGAAGCATATTACCTTTCTTATGAGGGGTTGACTGAGGATACAAGGATTGCAACTGAGATTTCAGAAGAGATAG AGGGAATCCTAGCAGAATTTCCTGAAGTTTTTCAAGAACCAAAGGGGCTACCTCCCAAGAGAGCAACAGATCATGCCATT TTGCTTCAAGAAGGAGCTTCCATACCCAACAGTAGGCCCTACAGGTATCCATTCTATCAGAAAAATGAGATTGAAAAATT AGTAAAAGACATGCTCAAGGCAGGGATCATTAGACCCAGTACAAGCCCTTTTAGCAGTCCTGCTATATTGGTGAAAAAGA AAGATGGAGGGTGGCGATTTTGTGTGGATTATAGAGCCCTCAACAAGCTTACAATCCCTGACAAATTCCCTATACCAATT ATTGATGAACTGTTAGATGAAATAGGAGCAGCTGTGGTTTTTTCAAAACTTGATTTGAAATCTGGTTATCACCAGATTAG AATGAGAGAGGAAGACATTCCTAAGACTGCTTTCAGAACCCATGAGGGCCACTATGAATACCTAGTCCTACCATTTGGCC TATCCAATGCACCCTCAACCTTTCAAGCACTCATGAACCAAGTCTTGAAGCCCTATCTTAGAAAATTTGCACTTGTATTT TTTGATGATATCTTGATATACAGTGAGAGTGAGGAAAAGCATAGGGAACACTTGAGGAAAGTTTTGCAAGCTTTAGAGGA TAACCACCTGGTGGCAAACCAAAAGAAATGTTCTTTTGGTCAACTGGAATTGGTGTATTTAGGGCATGTGATATCAGGAC AAGGGGTAGCTGCTGACCCTAACAAAATCAAAGATATGTTGAACTGGCCCACTCCAAAAGATGTGAAAGGATTAAGAGGT TTCCTTGGGTTAACAGGGTATTATAGGAAATTTGTGAAGAATTATAGTAAACTGGCCCAACCTCTCAACCATTTACTCAA AAAGAACAACTTCAATTGGAGTGAAGAGGCAGCTCAGGCTTTTGAGAATCTGAAGGTGATCATGACAACTGTGCCAGTTT TGGCAGTGCCAAATTTTGCAAAAACCTTTGTTCTAGAGACTGATGCATCAGGAAAAGGGTTAGGGGCTGTACTAATGCAA GATGGGAAACCAGTGGCTTATATGAGTAAGACACTTTCAGAAAGAGCACAGGCCAAGTCTGTATATGAGAGAGAATTAAT GGCAGTCGTGATTGCAGTTCAGAAATGGAGACACTATCTCCTAGGGCAGAAATTCATCATACATACAGATCAGAAGAGCC TAAGATTCTTAGCTGAACAGAGGTTGATGGGAGAGGAACAGCAGAAATGGGTATCCAAATTAATGGGATTTGATTTTGAA ATCAAATACAAGCCAGGAATTGAGAATAAGGCAGCAGATGCATTATCCAGAAAAATGCAATTCTCAGCTATATCTTCAGT TCATTGTGCAGATTGGGAGGATTTAGAAACTGAGATTATGGCAGAGGAAAAATATAGGAAAATCATGCAAGAGCTGATCA CTCAAGACACTTCTGTGGCAGGGTACCAATTGAGGAGAGGGAGATTACTCTATAAAGGGAGGATTGTCATTCCCAAAGGG TCTGGGAAAATTCTCACCATATTACAAGAGTTCCATGATTCTAAACAAGGGGGACATGCAGGCATTTTCAGAACCTATAA GAGGATTTCTGCTCTCTTTTTCTGGGAAGGGATGAAGCTGGATATTCAGAGTTATGTACAGAAATGTGAAGTATGTCAAA GGAACAAATATGAAGCACTCAGCCCAGCTGGCTTCCTACAGCCACTACCCATCCCTACTCAGGTATGGACTGACATTTCC ATGGATTTCATTGGGGGGCTACCTAAAACCATGGGGAAAGACACAATACTGGTAGTAGTGGACAGATTCACCAAGTATGC TCACTTCTTTGCACTCTCACACCCTTATAATGCAAAAGAAGTTGCAGAACTCTTTATCAAGGAGGTAGTCAAACTACATG GATTTCCTACATCCATAGTCTCTGATAGAGACAGAGTTTTCCTAAGCACCTTCTGGACAGAACTATTCAAATTAGCAGGA ACCAAATTGAAATTTAGTTCTGCATACCACCCACAAACAGATGGACAGACTGAGATTGTAAACAAATGTGTGGAGACCTA TCTTAGGTGTGTGACTGGGACCAAACCCAAACAGTGGCCTAAGTGGTTGTGTTGGGCAGAATTTTGGTACAACACCAACT ACCACTCTGCCATCAAAACCACACCCTTCAAAGCATTATATGGGAGGGAAGCACCTGTGATCATCAAGGGGACTGATTCT TTAACTTCAGTAGAGGAAGTTGAAAGGATGACTGCTGAGAGGAACTTACTTCTGAGAGAGCTCAAAGAAAATCTGGAAAA GGCCCAGAACAGAATGAAACAGCAGGCCAATAGACACAGGAGAGATGTGCAGTTTGAGATTGGGGACATGGTATATCTCA AGATACAGCCTTATAAGCTCAAAAGCCTGGCTAAAAGGAAAAATCAGAAGCTTAGTCCAAGGTACTATGGACCCTTTTTA GTGATAGACAAGATCAATCCTGTTGCTTACAAGTTGCAATTACCAGAGGGCAGTCTAATCCATCCAGTATTTCACATTTC CTTGCTCAAGAAGGCAATTAATGAGGGAACTCCTTGCCAACCATTACCCAGCTCATTAACAGAAGATTGGGAGCTCTTAG TAGAACCAGAAACTATTCTAGGAACAAGACAGAAGGAGAATGGGAGCATTGAAGTTTTGGTTAGATGGAAAGATCTTCCA ACTTTTGAAGATTCCTGGGAAGACTACACTGCTCTGCTGGAACAATTCCCTAATCATCACCTTGAGGACAAGGTGATTCT TCAAGGGGGGAGAGATGTTGCAAACCCACACTCTAGGCCCAGATTTGGCAAAGTCTATGAGAGGAGGCCCAAGCAAGGGA CAGCTGTACCTGAAGATCCACCTTCTAGAAGCTTGGATCCCAAGATAACCGACTAATGAGGTGGCAACACACACATGGGT GAGGGGGGACCATAGGGTATCAACCTAGGGAATATATGTTGGTTTGGAGAGAGAGTGAGGTAGGCAGAAATTAGTCTGGA CTGGGAGAGATTGAGCACTCTCGAATTGCTCAAGTTTATCTTGTTATTTTCTTCCTTGTATTTCCCTAAACACTGCTTCT GGGTTCATACCAGAGGATTCAGTGCCTTAATAGCATTCAATCTTCTTCTTTCCTATTACATTTTTCTGGTACCTAACAGA CAACCTCAAAATCTTGTGCACCATGATTTTGGCTCGTGTATCCAAACATGAACAATCTATGCATGAAGCTAGACTTGTAA TCTCTGATGCTTTCAGTAAAAAAACCTGAATTTACATTCTTGATTGCATAACTTAGTTAACACTTCACAGGAAAATTTTG GTTGAGCTTATTTTTAGACTGATATTAACAGGAAATTTAGGAAACTTGCCTATAATCATTGTCCCGGCTATATGTAAAGA CAAAGGTAGTCCTTTTGGAGACCCTGATGTGTGCTATCAATATGGAATGGCTTATGCTTCACTTTCTATGGCAGTACGTA AACTTCATTAGCTCCTTTCAGATGCTATTGTGTGTATGATTGGATACCAGTTGAATGAAATGTATAGACTTTCATCTCAA TTTATATGTAAAGTCTCATTCACTTTTTATCTCTATTTGCACTGGTGCCAAACTAGTAACAGAACATAACTATAAAAGAA AAAGTGAAACTATTATTTGGATATTAATGTGAAACTGTCCAACTAAAAAGTGAAAAAGAACCATTTATTTGGATATAGTT GATTCTTTTTTGTTTTATGAACTGTTATTCCTTGTAAAAATGTAGATTGGAGCTGTTTTTATATGGACTTATGTCTACAA CATAATGAGGGTTTCCTCAAGTAAAGTCCACAAAGAAGGTAATGGAAGTAGCGACTCTATCAGATTGATGGCTTCAGGGG ATTTAATAGAATCACTTCCAGAGGACTGTTTAGAATCACTAAATTCAGGAAAAGACAATGCTGATGATGCATCATACACC TCGCTTCTTTCTTCAAATGAATCTGAGCAGAAAATGGAGGTTGCTACAAACAACCCCTTAAATAGATGTTTTACTACTAA TCAAAGGGAACATAGACAATTGTCCAATGACTAGAAATGTAATTCCAAAAAGTTTTGGGGATTTCATTGCAGGTACCATT CTTTGATAAGATTAAGCACCAGTTGGGAATGATTTTAGGCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTATTG GAGCGGTATGATACCTTGTTTCCTTCCATAGAAATCAAGAGATCAAATTTGTCAGTCTATAAATTTGTGTTAGTGCAATA TTGCCAGTCTTTTATGAATCACCAATTGAAAGATACGTTTTATTTTCATTGCAGATTGTTGGGTTTATTATTGGTGTAGT TCCCCAGCTACATAATTTCATGATTGGCTCCAATGCTCCACTTCATGTGCTTGAAGACTCTGCTACCATGCTGGGGTATG CATCCCAAAACTTCATTTTAAATCATTTTCTCTTTATTATATTTTTATTTTTTTTCAGAAATAAAATATTTCCTTACATT ATTTTATTACATGCAGTGATGCAGCCATCCCAACTATAACCCTTATATTAGGTGCCAACCTCCTAAAAGGTAAACTAATA TCACAGTTTCTTATATATTATGAGCAAGTTGCTTTTTATATTTGGTGGTTTATTTTCCTTCATGGATGAATGCATCAACC AGGCTTGAAGGGAGCAAGTACTCCATTTTGGACAATTATAGGAATTATAGCAATCAGATACATTTTGCTTCCAATTGTTG GTGTTCTAATTGTTAAAGGGGCAACAAGCTTGGGTTTGGTGCAACCAGATCCCTTATACCAGTTTATGCTTCTTCTTCAA TATGCACTTCCTCCAGCTATGAATATAGGTACTACCAATTGCTCTAAATAATTGTTTCTTGATTGAGTGCATGTTTGGAA AACATGATTGATTCTAAAATCAAAATTAATTGTGAGAAAAAACTTATGGATGTTCGGATTGGTTATGAAGAAGTAGAAGT TTTTTTTGAAGCATGAAGAAGTACAAGTTGATCCAAACATGTTATATATAATTGATTCAAAGACTATTTGGCTTTGTCTG CAGGCACCATAGCCCAGTTGTTTGGAGCTGGTGAAAGTGAATGTTCTATTATCATGCTATGGACATATGCTTTGGCATCA ATTGCAGTTACTCTTTGGTCAACTTATTTCATGTGGCTAGTGTCTTAAATTTTGTACTCCTTGTTATATATGGTTATTAT TTTTTATTTCACTTCATATATATTTTTTACCTTAAGTTCTCTCCTTTCTATTGGAAACTACGTATATTGTCTAAAAATAT TAAAAAATCTTAAAGGAAGAGTTGAAATTTGATGCGTTGACG
CDS sequence (LotjaGi2g1v0352100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTTCTGGATCTTTTTATGGTTGCCTCTTTCCCAGTGATCAAAATATTGATAATCACTGCAATTGGGTTGTGTCT TGCACTGGATAACATCAATTTACTTGGAAAAGATGCAAGGATACAAGTGAATCATCTTGTACATTATGTGTTTAATCCTG CACTGGTGGGTGGCAATTTGGCTGAAACAATTACTTCTGAGAATGTAGCTGTGTTGTGGTTCATGCCAGTCAATATCCTT GCTACATTTGTGATAGGCTCAGCCTTAGGATGGCTTCTTGTCAAACTCACAAAGCCTCCCAAACACATTGAAGGTCTCAT ATTGGGTGTCTGTTCTGCAGATTGGAGCTGTTTTTATATGGACTTATGTCTACAACATAATGAGGGTTTCCTCAAGTAA
Protein sequence (LotjaGi2g1v0352100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFLDLFMVASFPVIKILIITAIGLCLALDNINLLGKDARIQVNHLVHYVFNPALVGGNLAETITSENVAVLWFMPVNIL ATFVIGSALGWLLVKLTKPPKHIEGLILGVCSADWSCFYMDLCLQHNEGFLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 114 | 114 | 4.3E-61 | – | |
| PANTHER | 1 | 114 | 114 | 4.3E-61 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 29 | 24 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Pfam | 12 | 111 | 100 | 1.8E-16 | ||
| Phobius | 30 | 40 | 11 | - | – | |
| Phobius | 41 | 61 | 21 | - | – | |
| Phobius | 62 | 72 | 11 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 73 | 94 | 22 | - | – | |
| Phobius | 95 | 132 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0352100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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