Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0356200 |
| Transcript ID | LotjaGi2g1v0356200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphoserine aminotransferase; TAIR: AT2G17630.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q9SHP0|SERB2_ARATH Phosphoserine aminotransferase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HEK4|A0A1J7HEK4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83258644..83260770) extracted from Lotus japonicus Gifu genome v1.2.
GTCTAATTTCAAGCACTACCAAACACACCCAATATAAATGAAAGCTACATGAGACTCAGATCTTTGCGCTTCATTCAAAC ATCTCTCTCTCTCTCTCTCTCTCTCACGAGCTTCATCATGAGCATGTCAATGGCCGCAACTTCACCTCACACCTATCTCA AAACCACCACCAACAACCTCTTCAACAACCACCCCACCACCACCACCACCACCACCTTCCGCTCCACCACCTCCTTCAAA CCCATCTCCATCAAATGCGCCACCCAGTTAGAGCCCCACCCGACCCACCAAACCCAATCCTCAGATCGGGTCTTCAACTT CGCCGCCGGCCCCGCCACCCTCCCGGAGAACGTCCTCCTCAAGGCCCAGTCGGAGCTCTACAACTGGCGTGGATCCGGCA TGAGCGTCATGGAGATGAGCCACAGAGGAAAAGAGTTTCTCTCCATAATCCAAAAAGCTGAATCGGATCTGCGTACCCTC TTGCAGATCCCGCCGGAATATTCCGTCCTCTTCCTCCAGGGCGGCGCTACCTCCCAATTCGCCGCCGTGCCGCTCAACCT CTGCGCCGCTAACGACGCCGTGGATTACATCGTTACCGGGTCGTGGGGTGACAAGGCCTTCAAGGAGGCTCAGAAGTATT CCAAACCCAAGGTGATTTGGTCTGGGAAATCTGAGAAATACACAAAGATTCCATGTTTTGATGAATTGGAACAGAACCCA GATGCTAGGTTTTTGCATATTTGTGCCAATGAGACAATTCATGGGGTTGAGTTTAAGGATTATCCTACTCCTAAGAATGC AAGTGGGATCTTGGTTGGTGACATGTCTTCAAATTTTTGCTCCAAGCCTGTGGATGTGTCTAGATTTGGTGTTATCTATG CTGGGGCCCAGAAGAATGTTGGGCCATCTGGTGTCACCATTGTGATCATCAGGAAGGATTTGATTGGGAATGCTCAGGGT GTGACTCCTGTGATGTTTGATTACAAGATTCATGATGACAACAATTCCCTTTACAATACCCCTCCTTGTTATGGGATTTA CATGTGTGGTTTGGTGTTTGAGGACTTGTTGGAGCAAGGGGGTTTGAAGGAGGTTGAGAAGAAGAATAAGAAGAAAGGTG AGCTTCTCTACAATGCAATTGATGAGAGCAGTGGTTTTTATAGGTGCCCTGTGGAGAAGTCTGTGAGGTCTTTGATGAAT GTGCCATTCACTTTGGAGAAGGCAGAGTTGGAGGCAGAGTTCATCAAGGAGGCTGCTAAGGAAAAGATGGTCCAGCTCAA GGGGCATAGGTCTGTGGGTGGCATGAGAGCTTCCATTTACAATGCCATGCCTTTGGCTGGAGTTGAGAAGTTGGTGGCTT TCATGAAGGATTTCCAGGCCAAGCACGCCTAGTTCCGCACGCTATTTGAATGTTTGGATCAGCTTTTGTTTTCTTGAAAT CAATTCTAATATCTAGAAGCTACTTACATAAACTTCTTCTTAGAATTGATTCTGGCTTTAGAATCAATTGTAGGAGGATT TTCAAACACACACTATGTCTGCTTGATTGCATGAAACCTAGTGCATTGAACTATTACACTAGCTTTTATTGTGTCACCAT AATTCAATAGTCTGTGACTCTGGGTCAGTTTTTGCTTTCTTTAGTTTTGTTGCCTGTCTCCTTTTTTCACATTTTATTCC CATGTTTGATATTCAAATTGGGTTGCACTCTTTACCATTGTCGACTAGACTAGAAGTGAAGTAGTTTAGGTTCTAGTTAT TGATATATCTCTATGCCTCAAGTTTGTATGGATTGAACTTTGAACTACTGTGGTAAATTCTGCACAAACTAGAAATAGCT TGGCATACACTAGTAAGGTTGGAGGAAGGACATGTATTCTGTGTAAGCCTGTAAGGTATGCATTGAATCAATAAGAATTT TCAGTGGACTTGATATTCTGTGTTCTATGCTTCTGTAGTCTTGTAGTAATTGTTTATTTTTATTATTCTAGTGATTCCAA TTTCCAACTTGGCGGCTCTTTTTAGTGTCAGCTTGCTGCCAATACCATGCAATTACCATCTGCATTTAGTTTTGAGAAGT AGCAAATTGCAACACAAACTACTTTTGATTAAATTAAAAAATAAGTC
CDS sequence (LotjaGi2g1v0356200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACTCAGATCTTTGCGCTTCATTCAAACATCTCTCTCTCTCTCTCTCTCTCTCACGAGCTTCATCATGAGCATGTC AATGGCCGCAACTTCACCTCACACCTATCTCAAAACCACCACCAACAACCTCTTCAACAACCACCCCACCACCACCACCA CCACCACCTTCCGCTCCACCACCTCCTTCAAACCCATCTCCATCAAATGCGCCACCCAGTTAGAGCCCCACCCGACCCAC CAAACCCAATCCTCAGATCGGGTCTTCAACTTCGCCGCCGGCCCCGCCACCCTCCCGGAGAACGTCCTCCTCAAGGCCCA GTCGGAGCTCTACAACTGGCGTGGATCCGGCATGAGCGTCATGGAGATGAGCCACAGAGGAAAAGAGTTTCTCTCCATAA TCCAAAAAGCTGAATCGGATCTGCGTACCCTCTTGCAGATCCCGCCGGAATATTCCGTCCTCTTCCTCCAGGGCGGCGCT ACCTCCCAATTCGCCGCCGTGCCGCTCAACCTCTGCGCCGCTAACGACGCCGTGGATTACATCGTTACCGGGTCGTGGGG TGACAAGGCCTTCAAGGAGGCTCAGAAGTATTCCAAACCCAAGGTGATTTGGTCTGGGAAATCTGAGAAATACACAAAGA TTCCATGTTTTGATGAATTGGAACAGAACCCAGATGCTAGGTTTTTGCATATTTGTGCCAATGAGACAATTCATGGGGTT GAGTTTAAGGATTATCCTACTCCTAAGAATGCAAGTGGGATCTTGGTTGGTGACATGTCTTCAAATTTTTGCTCCAAGCC TGTGGATGTGTCTAGATTTGGTGTTATCTATGCTGGGGCCCAGAAGAATGTTGGGCCATCTGGTGTCACCATTGTGATCA TCAGGAAGGATTTGATTGGGAATGCTCAGGGTGTGACTCCTGTGATGTTTGATTACAAGATTCATGATGACAACAATTCC CTTTACAATACCCCTCCTTGTTATGGGATTTACATGTGTGGTTTGGTGTTTGAGGACTTGTTGGAGCAAGGGGGTTTGAA GGAGGTTGAGAAGAAGAATAAGAAGAAAGGTGAGCTTCTCTACAATGCAATTGATGAGAGCAGTGGTTTTTATAGGTGCC CTGTGGAGAAGTCTGTGAGGTCTTTGATGAATGTGCCATTCACTTTGGAGAAGGCAGAGTTGGAGGCAGAGTTCATCAAG GAGGCTGCTAAGGAAAAGATGGTCCAGCTCAAGGGGCATAGGTCTGTGGGTGGCATGAGAGCTTCCATTTACAATGCCAT GCCTTTGGCTGGAGTTGAGAAGTTGGTGGCTTTCATGAAGGATTTCCAGGCCAAGCACGCCTAG
Protein sequence (LotjaGi2g1v0356200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLRSLRFIQTSLSLSLSLTSFIMSMSMAATSPHTYLKTTTNNLFNNHPTTTTTTTFRSTTSFKPISIKCATQLEPHPTH QTQSSDRVFNFAAGPATLPENVLLKAQSELYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRTLLQIPPEYSVLFLQGGA TSQFAAVPLNLCAANDAVDYIVTGSWGDKAFKEAQKYSKPKVIWSGKSEKYTKIPCFDELEQNPDARFLHICANETIHGV EFKDYPTPKNASGILVGDMSSNFCSKPVDVSRFGVIYAGAQKNVGPSGVTIVIIRKDLIGNAQGVTPVMFDYKIHDDNNS LYNTPPCYGIYMCGLVFEDLLEQGGLKEVEKKNKKKGELLYNAIDESSGFYRCPVEKSVRSLMNVPFTLEKAELEAEFIK EAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 447 | 418 | - | – | |
| PANTHER | 44 | 447 | 404 | 1.9E-240 | – | |
| PANTHER | 44 | 447 | 404 | 1.9E-240 | – | |
| Hamap | 86 | 446 | 361 | 48.381 | ||
| SUPERFAMILY | 86 | 444 | 359 | 8.03E-113 | ||
| Pfam | 88 | 435 | 348 | 1.1E-50 | ||
| TIGRFAM | 88 | 446 | 359 | 1.3E-166 | ||
| CDD | 89 | 443 | 355 | 0.0 | ||
| Gene3D | 101 | 336 | 236 | 2.4E-92 | ||
| ProSitePatterns | 273 | 292 | 20 | - | ||
| Gene3D | 337 | 447 | 111 | 2.6E-45 | ||
| Coils | 389 | 409 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | O-phospho-L-serine:2-oxoglutarate aminotransferase activity | Catalysis of the reaction: O-phospho-L-serine + 2-oxoglutarate = 3-phosphonooxypyruvate + L-glutamate. | ||
| Biological process | L-serine biosynthetic process | The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. |
Expression pattern of LotjaGi2g1v0356200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…