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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0358300 |
| Transcript ID | LotjaGi2g1v0358300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component; TAIR: AT4G27490.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|A2RVK7|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr|I3SC00|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85541997..85545946) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATAGAGCCCAGGCCCATGAAAAACGGCCCAATGAGTAACTGTGTTTCCCAAAACGCACCGTTTCTTGTTCGGACAT TTACATCATGTGAAAAACAAAACAACAAACATTAGGAAGTGAAGCAAAGAAACCTGGTACTACTAGTAGTAGTGAAGAAG CCACTCACCGCCGTTGGGTAATGGCCGGCAAAGCTGGAGCCACTCCGGCGACATACTCGCCGTCTCCGACCACCGATAAG AAGAAAACTTCTCTCATCAAGGAAGATTGGGTCCGACCCGATGGCCGCGGCTTCCACCAGTGCAGACCTGCCTGTAATGC AATTACTTGCAACCCTAATGACATTTGGTTCATCACAATAGTTTATTTGTTTATTAATCTTTGTTTCATTCAGCATAGTG TAAGGTTTTTATATGTAAATGTAATGTATATAGTTTATACTCTATAGTTGTTTCTGATACAGGAAGTGGACAGTTTCTAT TATGCTGATTGCATGATTGATTATGTATGTAAGGGTCTAATTGCATGAATTTTGAGGTGCATGTGATTATGTGAAGTCAT GGAAGAAGATTAGATAACTTTGATTGTGTTTTAGTTGCACTATTTTATGGTTAAAGCACACTAATATTTGGTGACTTGCA GTTTTCAGGACTGGTGCTGTGAATGCTGCATCAGGATCTGCTTATGCTGAGTTTGGAAACACAAAAGTCATTGTATCTGT GTGAGTGCTTTCTTTTAAGTTTGCACTTCAATCACCTTGTTGTAGAATCCTGTTTTTGTTTGTTATGTTTTTCTTCCTAA TGTGAGTTTTATTTATTTATTTGTATTTGTTAATTTAGTTTTGGGCCGAGAGAAAGCAAGAAGGCCATGCTGTACAGTGA TGTAGGGCGTCTGAATTGCAATGTCAGCTATACAACGTTTGCAACTCCAGTTCGTGGACAGGTATATAAAATGTTTATTC TTGTAATTTTTGCATTATTCTACTTCTTGGATATATCAAGTAGCTTTTAATATCTTATATCTCACAAAGTTAGGGTTCAG ACCACAAAGATTACTCTGCGATGCTTGATAAAGCTTTGGGGGGTGCAATAATATTGGAATCTTTCCCCAAGACGACTGTG GATGTTTTTGCACTGGTGCTGGAATCTGGCGGAAGTAAGCTTAAATTTTCATATTTGGTTTCATATGTAATTCATCATGA TATTGTTTTCTAGGGTTTGAATTGTAAGGGAAAAAATGTGCTGCCTGAATGTATATTAGAAGAAATACAATAGAAAAGGA AGTCTAAGTTTATAGTTATTTTTGTGTTACCTTGTCATTCAATGATTGCTTTGCTTCAATTGGTGTTGGAAGAGGCATTT TGCATTAGCATATATTTGTTTGGTACTTTGGTTAACTACGAGGTGTGATTCAGTTGGTACTTGGTAGCCTAAGCTACACA GCAGTGAAGTTCACCCGCTATGCAGGTGTTTGAATCTCAATAGACACACCTTGTGGTCAAAGTGACGACATGGGGCACCT GAGTGGGGACCATTCCCACACTTTTAGGTGTTGGGATAGCTCATGGGAAACAAAAACTGTAGTTTCTTTGGTGCAATTAG TTTAATCCATATATTATTCGACAGAGGCAGCTATGTACATAAGGGGTTACAAAATATGCTGTTGTGTACATATGGTGCCC CTGCTTCTTTCCCTCCCCCCCCCCCCCGTACCCCCCCCCCATAAGTGAGCTGTTTTTATGGACACTTTAAACGTAAATAT TATGAAAGAGATAGTCTTTTTGGTAGTCTGGTTCTTAGAGAACTTGATAGAGATGCAGCTACATCCTTTGGATTTTATAA TTGGAAGAGAGTAATAATGAATTATTCTGCTTAATATTTGGATCCGTTAGAGTTACAATTTAGTTGAATATCTAAGCAAA AAATGTTCTACCTGATTTTTCCGCCATGTTTCTAGCAGTAATAATATTATTGAGCTTGTGGCAGGTGATCTCCCAGTTGT CATATCATGTGCTAGCCTTGCCTTGGCAGATGCTGGAATAATGATGTATGATCTTGTAGCCTCAGTTTCTGTGGTATGGA CCTTACTCGCCTTTGCACTTTTCTGTAATTTCTACATGCTTTTTAGGGTGCTAAAACTGTGTCTTCCATTTTTATACTTC TCTTGTAATTTAAATATACTGTAATATCATCTTCTACTTTCCTTTTCTCTTCTGATTTCTGACTTAGCACCAGCATCACA CATTTCATGCATCTTTAAATTACTTATTCATATATACATTTGTCTTCTGGGGCCTAAAAGTACTGTTTTTAGACAATTTT TTAGTTATTCCAATCCAACTACAGTCTATGGATACTAAATTTTGTGGCATAGTTGCATGTGTGTGCGCGAGCCATTTTTC TTGGGTGATGTTTCTGGATATGTTAATTCTAGGTTTACCTTCACAAAGTCATTATGACCAATGAGACCATCATGATAGTG CCAAACAACCCTCAATTACTAAAGTCTACAATAGAAGGAGGTGAGGAACAGAAATGTAATAGGAGTTCTATTGTTTTGTA GATGTTTGAGCAAGTAGTCTGTGAGTTACTCCTCTGTAGTGTTAGTTTGTTACTCTTTTGTACTGGCAGTTGGTGTAAGT GCAATTACTAGGCTAATAAATAAGGAGAGGACAAGGGGGGTAAGTATCGGTTCATTGGACTAGAAACTAGAAAGGAATTG GTAGAGAAACTGGGGTCTCTCAAATTTTCCCCAGAAGTTGTATTCTGTGGCCGCATTTAGCTGTTCAGGAACTACATAAT GACAGTTTTTTATTTTCAATTCTTTTTATTTCTGATCCAGTTTTAACACATCAGAAGAAGGGTGATGAGTTTTACCTGTT ATGATTCTCCCATGAATTGTTCCTTTGTGACATGCTTATTTTGCTGGTGACAGTCTAACTGAATTCCTTTTTATCATTGT TTTTTTTAATAATGATCGCAGTCATGTCTCAGTAAGAACCTTGTCATTGATCCTATTTCGGAGGAGGAAAACTGCCAAGA TGGAAGCATAATGATTACTTGCATGCCTTCTCGCTACGAAATCACCCAACTCACAGTTACTGGGGAATGGTCCACCCCAA AGATTAATGAGGTCTGCTTGTTTTGAAGTTTCTGTTTAATTTTTATAGAAATTCCTATTTGAAGGTGTGAATATATGTCA AGATAATTTTTTTCTTCACTGATTTAAGAAAAATAGCATTTAGTACATTGACCTGCGGTTTTCTGCTCTGAGGATTGCAT ATTTGCTTTACTATTTTGCTCAGTCATAATTTTTGTCTCACCTCTTCACCCTGACACGATAGTATCTAGATATTTGTAAT GCCTGTTGGTGTATCTTAATTGATCACTGTTACACGTAATCAGTGGCGGAGAAACTGGAGGGGGCAAAATCAAAGAATAT AGCATACATACAATAATTTCTGCAGCTCACATACATTTTATCACAGTAAAAAAACAAAATTGAAAAGCTTGGGGGGGGGG GGGGGATTGGCAGTAGCACTTCCCCTCCTCCCTCCGCCACTGCACGCAATAAAAGTCGTATCCCAATAAGTGAGGTCGGC TTTATGGATCACTTGATCCTCACTTGATCCATATTAAAGACATAGCCAATTTTACGTTGTTGTCACAAGCCTAACACAAC CTTCATTCTTTATCCCGGCTTAGGACGGGCTATGAGTCTATGACACAACATAGGCGTAGTTTAATTGGCCACAGACCACA GTTAATAAATATAAATTGAGTCAAGCGATGTAAAGATATAATTTCTTATCATATCTAATAGAGATTGAAAGAACTCATTG ACAGTTTAATTTGCTTCATACAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCCAAGGTTATGAGGTCATGT TTGAAAGAAGCTTCTGATTCACAAGATTAG
CDS sequence (LotjaGi2g1v0358300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGCAAAGCTGGAGCCACTCCGGCGACATACTCGCCGTCTCCGACCACCGATAAGAAGAAAACTTCTCTCATCAA GGAAGATTGGGTCCGACCCGATGGCCGCGGCTTCCACCAGTGCAGACCTGCCTTTTTCAGGACTGGTGCTGTGAATGCTG CATCAGGATCTGCTTATGCTGAGTTTGGAAACACAAAAGTCATTGTATCTGTTTTTGGGCCGAGAGAAAGCAAGAAGGCC ATGCTGTACAGTGATGTAGGGCGTCTGAATTGCAATGTCAGCTATACAACGTTTGCAACTCCAGTTCGTGGACAGGGTTC AGACCACAAAGATTACTCTGCGATGCTTGATAAAGCTTTGGGGGGTGCAATAATATTGGAATCTTTCCCCAAGACGACTG TGGATGTTTTTGCACTGGTGCTGGAATCTGGCGGAAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCTTGGCA GATGCTGGAATAATGATGTATGATCTTGTAGCCTCAGTTTCTGTGTCATGTCTCAGTAAGAACCTTGTCATTGATCCTAT TTCGGAGGAGGAAAACTGCCAAGATGGAAGCATAATGATTACTTGCATGCCTTCTCGCTACGAAATCACCCAACTCACAG TTACTGGGGAATGGTCCACCCCAAAGATTAATGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCCAAGGTT ATGAGGTCATGTTTGAAAGAAGCTTCTGATTCACAAGATTAG
Protein sequence (LotjaGi2g1v0358300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKAGATPATYSPSPTTDKKKTSLIKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKA MLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALA DAGIMMYDLVASVSVSCLSKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKV MRSCLKEASDSQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Gene3D | 18 | 252 | 235 | 3.0E-67 | ||
| PANTHER | 22 | 248 | 227 | 1.2E-77 | – | |
| PANTHER | 22 | 248 | 227 | 1.2E-77 | – | |
| SUPERFAMILY | 26 | 195 | 170 | 1.82E-34 | ||
| Pfam | 40 | 164 | 125 | 7.5E-28 | ||
| CDD | 41 | 247 | 207 | 4.17929E-103 | – | |
| SUPERFAMILY | 166 | 247 | 82 | 1.02E-19 | ||
| Pfam | 168 | 227 | 60 | 2.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0358300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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