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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0358300 |
| Transcript ID | LotjaGi2g1v0358300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyribonucleotide nucleotidyltransferase; TAIR: AT4G27490.7 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|A2RVK7|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr|I3SC00|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85542340..85545955) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTTCATCACAATAGTTTATTTGTTTATTAATCTTTGTTTCATTCAGCATAGTGTAAGGTTTTTATATGTAAATGTA ATGTATATAGTTTATACTCTATAGTTGTTTCTGATACAGGAAGTGGACAGTTTCTATTATGCTGATTGCATGATTGATTA TGTATGTAAGGGTCTAATTGCATGAATTTTGAGGTGCATGTGATTATGTGAAGTCATGGAAGAAGATTAGATAACTTTGA TTGTGTTTTAGTTGCACTATTTTATGGTTAAAGCACACTAATATTTGGTGACTTGCAGTTTTCAGGACTGGTGCTGTGAA TGCTGCATCAGGATCTGCTTATGCTGAGTTTGGAAACACAAAAGTCATTGTATCTGTGTGAGTGCTTTCTTTTAAGTTTG CACTTCAATCACCTTGTTGTAGAATCCTGTTTTTGTTTGTTATGTTTTTCTTCCTAATGTGAGTTTTATTTATTTATTTG TATTTGTTAATTTAGTTTTGGGCCGAGAGAAAGCAAGAAGGCCATGCTGTACAGTGATGTAGGGCGTCTGAATTGCAATG TCAGCTATACAACGTTTGCAACTCCAGTTCGTGGACAGGTATATAAAATGTTTATTCTTGTAATTTTTGCATTATTCTAC TTCTTGGATATATCAAGTAGCTTTTAATATCTTATATCTCACAAAGTTAGGGTTCAGACCACAAAGATTACTCTGCGATG CTTGATAAAGCTTTGGGGGGTGCAATAATATTGGAATCTTTCCCCAAGACGACTGTGGATGTTTTTGCACTGGTGCTGGA ATCTGGCGGAAGTAAGCTTAAATTTTCATATTTGGTTTCATATGTAATTCATCATGATATTGTTTTCTAGGGTTTGAATT GTAAGGGAAAAAATGTGCTGCCTGAATGTATATTAGAAGAAATACAATAGAAAAGGAAGTCTAAGTTTATAGTTATTTTT GTGTTACCTTGTCATTCAATGATTGCTTTGCTTCAATTGGTGTTGGAAGAGGCATTTTGCATTAGCATATATTTGTTTGG TACTTTGGTTAACTACGAGGTGTGATTCAGTTGGTACTTGGTAGCCTAAGCTACACAGCAGTGAAGTTCACCCGCTATGC AGGTGTTTGAATCTCAATAGACACACCTTGTGGTCAAAGTGACGACATGGGGCACCTGAGTGGGGACCATTCCCACACTT TTAGGTGTTGGGATAGCTCATGGGAAACAAAAACTGTAGTTTCTTTGGTGCAATTAGTTTAATCCATATATTATTCGACA GAGGCAGCTATGTACATAAGGGGTTACAAAATATGCTGTTGTGTACATATGGTGCCCCTGCTTCTTTCCCTCCCCCCCCC CCCCGTACCCCCCCCCCATAAGTGAGCTGTTTTTATGGACACTTTAAACGTAAATATTATGAAAGAGATAGTCTTTTTGG TAGTCTGGTTCTTAGAGAACTTGATAGAGATGCAGCTACATCCTTTGGATTTTATAATTGGAAGAGAGTAATAATGAATT ATTCTGCTTAATATTTGGATCCGTTAGAGTTACAATTTAGTTGAATATCTAAGCAAAAAATGTTCTACCTGATTTTTCCG CCATGTTTCTAGCAGTAATAATATTATTGAGCTTGTGGCAGGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCT TGGCAGATGCTGGAATAATGATGTATGATCTTGTAGCCTCAGTTTCTGTGGTATGGACCTTACTCGCCTTTGCACTTTTC TGTAATTTCTACATGCTTTTTAGGGTGCTAAAACTGTGTCTTCCATTTTTATACTTCTCTTGTAATTTAAATATACTGTA ATATCATCTTCTACTTTCCTTTTCTCTTCTGATTTCTGACTTAGCACCAGCATCACACATTTCATGCATCTTTAAATTAC TTATTCATATATACATTTGTCTTCTGGGGCCTAAAAGTACTGTTTTTAGACAATTTTTTAGTTATTCCAATCCAACTACA GTCTATGGATACTAAATTTTGTGGCATAGTTGCATGTGTGTGCGCGAGCCATTTTTCTTGGGTGATGTTTCTGGATATGT TAATTCTAGGTTTACCTTCACAAAGTCATTATGACCAATGAGACCATCATGATAGTGCCAAACAACCCTCAATTACTAAA GTCTACAATAGAAGGAGGTGAGGAACAGAAATGTAATAGGAGTTCTATTGTTTTGTAGATGTTTGAGCAAGTAGTCTGTG AGTTACTCCTCTGTAGTGTTAGTTTGTTACTCTTTTGTACTGGCAGTTGGTGTAAGTGCAATTACTAGGCTAATAAATAA GGAGAGGACAAGGGGGGTAAGTATCGGTTCATTGGACTAGAAACTAGAAAGGAATTGGTAGAGAAACTGGGGTCTCTCAA ATTTTCCCCAGAAGTTGTATTCTGTGGCCGCATTTAGCTGTTCAGGAACTACATAATGACAGTTTTTTATTTTCAATTCT TTTTATTTCTGATCCAGTTTTAACACATCAGAAGAAGGGTGATGAGTTTTACCTGTTATGATTCTCCCATGAATTGTTCC TTTGTGACATGCTTATTTTGCTGGTGACAGTCTAACTGAATTCCTTTTTATCATTGTTTTTTTTAATAATGATCGCAGTC ATGTCTCAGTAAGAACCTTGTCATTGATCCTATTTCGGAGGAGGAAAACTGCCAAGATGGAAGCATAATGATTACTTGCA TGCCTTCTCGCTACGAAATCACCCAACTCACAGTTACTGGGGAATGGTCCACCCCAAAGATTAATGAGGTCTGCTTGTTT TGAAGTTTCTGTTTAATTTTTATAGAAATTCCTATTTGAAGGTGTGAATATATGTCAAGATAATTTTTTTCTTCACTGAT TTAAGAAAAATAGCATTTAGTACATTGACCTGCGGTTTTCTGCTCTGAGGATTGCATATTTGCTTTACTATTTTGCTCAG TCATAATTTTTGTCTCACCTCTTCACCCTGACACGATAGTATCTAGATATTTGTAATGCCTGTTGGTGTATCTTAATTGA TCACTGTTACACGTAATCAGTGGCGGAGAAACTGGAGGGGGCAAAATCAAAGAATATAGCATACATACAATAATTTCTGC AGCTCACATACATTTTATCACAGTAAAAAAACAAAATTGAAAAGCTTGGGGGGGGGGGGGGGATTGGCAGTAGCACTTCC CCTCCTCCCTCCGCCACTGCACGCAATAAAAGTCGTATCCCAATAAGTGAGGTCGGCTTTATGGATCACTTGATCCTCAC TTGATCCATATTAAAGACATAGCCAATTTTACGTTGTTGTCACAAGCCTAACACAACCTTCATTCTTTATCCCGGCTTAG GACGGGCTATGAGTCTATGACACAACATAGGCGTAGTTTAATTGGCCACAGACCACAGTTAATAAATATAAATTGAGTCA AGCGATGTAAAGATATAATTTCTTATCATATCTAATAGAGATTGAAAGAACTCATTGACAGTTTAATTTGCTTCATACAG GGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCCAAGGTTATGAGGTCATGTTTGAAAGAAGCTTCTGATTCACA AGATTAGAGTGAGAGT
CDS sequence (LotjaGi2g1v0358300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGTACAGTGATGTAGGGCGTCTGAATTGCAATGTCAGCTATACAACGTTTGCAACTCCAGTTCGTGGACAGGGTTC AGACCACAAAGATTACTCTGCGATGCTTGATAAAGCTTTGGGGGGTGCAATAATATTGGAATCTTTCCCCAAGACGACTG TGGATGTTTTTGCACTGGTGCTGGAATCTGGCGGAAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCTTGGCA GATGCTGGAATAATGATGTATGATCTTGTAGCCTCAGTTTCTGTGTCATGTCTCAGTAAGAACCTTGTCATTGATCCTAT TTCGGAGGAGGAAAACTGCCAAGATGGAAGCATAATGATTACTTGCATGCCTTCTCGCTACGAAATCACCCAACTCACAG TTACTGGGGAATGGTCCACCCCAAAGATTAATGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCCAAGGTT ATGAGGTCATGTTTGAAAGAAGCTTCTGATTCACAAGATTAG
Protein sequence (LotjaGi2g1v0358300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALA DAGIMMYDLVASVSVSCLSKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKV MRSCLKEASDSQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 172 | 172 | 7.4E-45 | ||
| CDD | 3 | 167 | 165 | 6.40467E-75 | – | |
| SUPERFAMILY | 4 | 115 | 112 | 2.23E-15 | ||
| PANTHER | 6 | 168 | 163 | 7.7E-51 | – | |
| PANTHER | 6 | 168 | 163 | 7.7E-51 | – | |
| Pfam | 7 | 84 | 78 | 5.3E-13 | ||
| SUPERFAMILY | 86 | 167 | 82 | 4.21E-20 | ||
| Pfam | 88 | 148 | 61 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0358300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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