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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0359700 |
| Transcript ID | LotjaGi2g1v0359700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G35100.1 plasma membrane intrinsic protein 3; Swiss-Prot: sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7; TrEMBL-Plants: tr|V7AJI3|V7AJI3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0359700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85704246..85708258) extracted from Lotus japonicus Gifu genome v1.2.
CCCACTTAATTTTTTTATTAAAAAACAATAGAATTTCATACAAAGCATCACTAACATGTTACGTTAGAGAGACAAGCAGA GACTCACTTCTGAGTAAGAGCGTTATAGAATCTCTATGATGAGAGTTGCACACCAATTGAAGTTCTTCTAAACGTAGAAG ATAAAATTCTTAACCTATGCGAATGTGAGAGTTAAACTCGAAACTTACAACTAATTATGCCAACCGAGAAACCCACTTAA GTTATTGGATTAATTTTTCAACATTTCTCCCTTCCTCACATTACTTAAATACCACACCACTCTATTCTCAAACTCCTCAA ACCAATCCATTAACCACACTTGCAACAGTGCCTAGTGAGTGAGTATAGAGCACAAACCAAAGATGGCGAAGGATACTGAG GTTCAAGAACAGGGTGAATACTCTGCAAAAGACTACCAGGATCCACCTCCGACTCCGCTTTTCGACCCGGAGGAGCTGAC AAAGTGGTCCTTCTACAGAGCTCTCATAGCTGAGTTCATAGCCACACTTCTCTTCCTTTATGTAACGGTTTTAACTGTCA TTGGCCACAGCAGGCTCAACAGTGCTGATCCTTGTGATGGTGCTGGCATCTTGGGTATTGCTTGGGCCTTTGGTGGCATG ATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGTATATATGCTTCTCCTCCCCTCTCTTTCTTTTTCATATGTCA TAAAATAATTTTTTTAATTTAATCAAATAAAAAAAAACTATATATTTGTTCATGAGCAAGTGAGGTATTTTGTAAAAATT GTCCGACTCCTGAGTTAGCTCGACTCAACCCACACTCATACCCATGAGTGTGGGTTGAGTTAGAATAATAGATGCTCATA TTTAAGTGAGTTTTTTTTACTCAGCCGCTCAACTTACTAGACTAGTAAAGTAAGCGGGTTGGAAGTGAAGTGAATCAGTT TTTATTGATGAAACATAATTTTTTACACAATTTAGTGTGATTCAAGGAAATTTTCATTTTTCATTCACATATTTTTCCAA TTTCTAGCATTTTTGTATATTTTAATAAATTTTTGTTAATATTTATTTTATGTTTAGATAAAAGTGAATCAATTCATCTA AAACAGCTGGTGACGAATTGATTCGAATTATGACTTTAAAGGCTTACACTAGAATAGAGAGCTAGCTCGACTCAACTCAC TTTTGTTCGAGTCCATCGGAACTAACTAGTAAAAAACTAAAAAATTGTATCATATATTTTATAAGTTTTTGGTTTGTTAT ATATGCTGTAAATTTGTTTCTTTTGGTTGTTTAATTTGATGGAGATGTGTGATGTGTGTGGAATTGATGGTTGCAGGAGG ACACATAAACCCTGCAGTGACATTTGGGCTGTTCATAGGACGCAAGGTGTCTTTGATAAGGGCACTTCTATACATAGTAG CACAGTGTTTAGGTGCAATCAGTGGTGTTGGATTGGCCAAGGCCTTCCAAAAATCATTCTACAACAGGTACGGTGGCGCT GCCAATTTTGTGCAACCTGGTTACAGCAACGGCACCGCTTTGGGTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACAC TGTTTTCTCTGCCACTGATCCTAAGAGAAACGCTAGGGATTCCCATGTTCCTGTAAGCTATCTCAATTAGTTAACCTTAT GATATAATATAATGTAATTTCACACTCACAATGTTTAATTTCATTCACTAACTTATATATATGTTGCTTTGGTTGTGAAA TTATATAAAGGTTTTGGCTCCACTTCCTATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCTGTTACTGGTA CTGGAATTAACCCAGCAAGGAGTTTTGGAGCTGCTGTCATCTACAACGAAGACAAAATCTGGGATGACCATGTAAGCTTC CTTATAAATAAACTATCTCTAATTTGTCCTTTTACATTTTCTAACCAAAGAAAACAAACTAGCTAGTGTGGAAAGTTAGG TAGGTTCATACTTCATAGTTTTAACCTCAAATTTTTAGTCCATGTTTTGTAGCCAGAATTGATTTTGGGGTGAGGCTTTG GGTAGGTTCCCAACAAGGAACTTCAAAATCAATTCTTACCTTGAAAACTTCATTTTAAATGACAATAGAGATGTTAGGGA GTTATCTCGGAAAATTGATTTCAATTTCAAAATCAATTATGGTTGAAGCTAAAGAGAGTAATTTATGTATTAACCATAAT CAATGGTGAGATTTGTAGATTTGACAATATCCCTAAGAAAAAATTTAAAAATCATTTTTTCACAAATTTATCAAAACATT AATCACTTTCACTTTCAACTCATTTTTGCTATGATCAATCTTACCGAAATCAACTTTGTTCACAATCAATTGTGACAACA CTTATCTAAACACGCACCTAGGTTTCATATTGATTCTTCTAAAAGGGAAATTTATCCAATCATACCATTAGACCACACTC TCCAATTATGATGGAAAAAGAGAGAAACTCAAGTTAAACTTTTGAGTTTTTCTCTATCATAAAAGGGTATGACTGAGAAT GATGTACAAACTTAGGATGTGAGAATATAATCACTTATATATGTTGATGATGTTCTAATTTTGGTGATTTGTTTTATGTG ATGACAGTGGATTTTCTGGGTTGGACCATTTATTGGAGCTCTAGCAGCTGCAATCTACCACCAATACATTCTCAGAGCAG CAGCTATCAAAGCTCTTGGATCCTTCAGGAGCAACAATTAAGCACTTAAATTAAGCTATGGTGTTAATTTCCCCCAAAAG AATAATGATTCCCATGGTATTATGCTGAGGAGTGCAAGCCTGTCCCTGCTGGTCCCTTTAGGCCTTATCTAAGTCTTTTC CTGTTCAGCTGCAGCTGTGTAGAGAAAAAAGGCTAAACACAAGGGACCATGAAATTGTAGATAAGAATGCTTGTGTCCAA GGGTGTATTTTTATCCCTTTTGTGTCTTTTCTTAAATTTTAATGTATGTATTTGTCAAGTGTTGATTTTCTCTTGTGCAT CCTTGCTCATATTTCATTTTGCACTTCTTGATTGTTATGTGGTATATTCCTCGTTCCCTGTTTCAAATTTCGCATCAAAA ATTTGCTTGATTCTCAAAACTTTATCAGTTATCTATGTACAATGCACAATGACATGAGTATTATTATTTATATAATAGAG TTTGTGGTCCTTCTGTTCACATAGCTTATTGCTTTGGATAGAGGAAGGACCAGGACCATGTGTATCCAAACATACCCTAA TATTAGTGGCAAGTCATTTTATTGCTTTCTTTTCTTTTCCAGTTTATCATCCCTTGTTAAAATACTTGACCTTACATTGG AAGAAAAAACTATAATCTATTATAATATGTTTGAAAATCATTCCATAACCAATTTTAAAGCTGAAATTAATGTTAAGAAG AACCTTCTATCAATATTTTTTTTAATGTTAGAATTGATTTGGATAAAAGTGTAACCAGTTCAAATATCTGTGGTTATATT AAATATAACTTTTTCTTACCTTTTCGATGTAAAGAAAAATGTAGGTTTTTGGATTACCATACTTTGTTTGTAGGCCTAAT TCTTGAAATTTCTCTTGTGTTTCTGTCTTACAAGGTAGGATTGTGTCATCATCGATTCATCACAGGCTTGAAAACAGAGA GTGACTATTATGGCTAAACATTTAGTGTCCTTTCATGATTAATTAGAAAATTTCTGCTGTGCTTTAGTCCTTAGCAATTA ATTAAGTAAGCTTCAGTAAGTTCATTCACCTAACTATAATCTTCTTGAACCTTCATATTTGTCCATTACCAAAAATGAAC CAAACATTATTCGCTCATTTCGTTGTCTTTTTACCTGCAATTAGTGTCTTTCAATATATTTGGGGTCCTTGACAACTGTT CTATCTTTGACATTTTTATAAATTTCTGTTGTGATGCTTATCCTAAAGTATATTATACAATTGTACTAGACTATGAGCTT CACTCGAAAGCTA
CDS sequence (LotjaGi2g1v0359700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGGATACTGAGGTTCAAGAACAGGGTGAATACTCTGCAAAAGACTACCAGGATCCACCTCCGACTCCGCTTTT CGACCCGGAGGAGCTGACAAAGTGGTCCTTCTACAGAGCTCTCATAGCTGAGTTCATAGCCACACTTCTCTTCCTTTATG TAACGGTTTTAACTGTCATTGGCCACAGCAGGCTCAACAGTGCTGATCCTTGTGATGGTGCTGGCATCTTGGGTATTGCT TGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCTGCAGTGAC ATTTGGGCTGTTCATAGGACGCAAGGTGTCTTTGATAAGGGCACTTCTATACATAGTAGCACAGTGTTTAGGTGCAATCA GTGGTGTTGGATTGGCCAAGGCCTTCCAAAAATCATTCTACAACAGGTACGGTGGCGCTGCCAATTTTGTGCAACCTGGT TACAGCAACGGCACCGCTTTGGGTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCC TAAGAGAAACGCTAGGGATTCCCATGTTCCTGTTTTGGCTCCACTTCCTATTGGATTTGCTGTGTTCATGGTTCACTTGG CTACAATCCCTGTTACTGGTACTGGAATTAACCCAGCAAGGAGTTTTGGAGCTGCTGTCATCTACAACGAAGACAAAATC TGGGATGACCATTGGATTTTCTGGGTTGGACCATTTATTGGAGCTCTAGCAGCTGCAATCTACCACCAATACATTCTCAG AGCAGCAGCTATCAAAGCTCTTGGATCCTTCAGGAGCAACAATTAA
Protein sequence (LotjaGi2g1v0359700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKDTEVQEQGEYSAKDYQDPPPTPLFDPEELTKWSFYRALIAEFIATLLFLYVTVLTVIGHSRLNSADPCDGAGILGIA WAFGGMIFILVYCTAGISGGHINPAVTFGLFIGRKVSLIRALLYIVAQCLGAISGVGLAKAFQKSFYNRYGGAANFVQPG YSNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNEDKI WDDHWIFWVGPFIGALAAAIYHQYILRAAAIKALGSFRSNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 280 | 280 | 4.9E-173 | ||
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 280 | 280 | 4.9E-173 | – | |
| Gene3D | 24 | 281 | 258 | 1.1E-100 | ||
| SUPERFAMILY | 30 | 267 | 238 | 2.75E-66 | ||
| Pfam | 31 | 262 | 232 | 5.1E-83 | ||
| Phobius | 37 | 61 | 25 | - | – | |
| CDD | 39 | 265 | 227 | 2.96103E-80 | ||
| PRINTS | 39 | 58 | 20 | 1.2E-69 | ||
| TMHMM | 41 | 63 | 23 | - | – | |
| TIGRFAM | 43 | 261 | 219 | 7.9E-63 | ||
| Phobius | 62 | 72 | 11 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 73 | 97 | 25 | - | – | |
| PRINTS | 83 | 107 | 25 | 1.2E-69 | ||
| Phobius | 98 | 116 | 19 | - | – | |
| ProSitePatterns | 101 | 109 | 9 | - | ||
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 117 | 139 | 23 | - | – | |
| PRINTS | 120 | 139 | 20 | 1.2E-69 | ||
| Phobius | 140 | 197 | 58 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| PRINTS | 169 | 187 | 19 | 1.2E-69 | ||
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 198 | 218 | 21 | - | – | |
| PRINTS | 205 | 227 | 23 | 1.2E-69 | ||
| Phobius | 219 | 244 | 26 | - | – | |
| TMHMM | 244 | 266 | 23 | - | – | |
| PRINTS | 245 | 265 | 21 | 1.2E-69 | ||
| Phobius | 245 | 266 | 22 | - | – | |
| Phobius | 267 | 281 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0359700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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