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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0360500 |
| Transcript ID | LotjaGi2g1v0360500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60580.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9; TrEMBL-Plants: tr|I1LQV9|I1LQV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0360500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85798592..85803888) extracted from Lotus japonicus Gifu genome v1.2.
ACAGCCTTGAGAATAATCCACAGAGTCTGCGCGCACTGGAGAATCAAAAAGTATGACAATGAGAGTGGCAGTAGCAATAG TCCATGCTACCCCACCATCTCCACCACCACCACCGTACCAACAGTGACCAAATTTAATTGACTCATAAATGTGAAAGCTT GGGTTATGTGCATAATCACACTCACTCACTGTCCCTTATCTATGTGACGGTGTTACTCATTTAAAGTTTTCTCCATTCCT TGTCTCTGTCATAGCTCATCTGAAGTAAGTGGTTGTTGCTTGTTGGTATGGCTATGATTGGTGTCTGCAAGTCTGCAACT ATTGAAATTTACTTGCTTGTGTGGTTGCTTTTGGAATTCTAAGTTAAGGGTTTGTCTTCTTCCTTTTTTTCTGTTTTGGC AACAGCAACATGAGTTCAGAGGAAAAGCATGTCAGTGAAGAAGATGCTGCAGCTTCTTGCAGAAGAACAGTTTCTCTTGC TGTTAACAAGGTACTTTGTGTTCTTCCTCCTTCAACTTGTGTTTCATGTCATGGCCTCATGGGGGCTTCAGGCTTGTTTT TTTTTTTTTTTCTTAAGGACTAACTGTATTTTAAACTATTGAAGTTTTTTTTTTCTCTTTGCTTTGGATTTGTGATTTTC TCTTGATGATGTTTCATCAGACTGAGATTTTCAAACAAAATCTTGCTAATTGTTACTGAACACGCAGAATAATATTTTTG ATAGTAAAGTTTGCATATTTTTTTTTTCAATAACTAGGGGCCTTAACAATTGATTTAATATGTTTATCTATAATTTTGAA AAACTTTGGAGCTTGATCTATCTGAATTTCCATCAATTGTATCCGTTCGGTAGAGAAATATTTCTATAAGATATAGTACT TTGTTTGATTTTGGAGCTTGATCTATCTGAGTTTGTTATGATTTCTTATGTGTGAATGAAAACTGAGTCCAGCAAGCGTT CTGCTTTTTTATGTTTCCTCTGTCTACTTTGAATTATGCAGTTAAAACCTGTTCAAGAAAGTATTAGTAAGAATCAGTTC CAGTTCTTCCTAAATTAAGCTATTTCCATTGTACTGTGATTTGAATATGATGTCTTCTCATTATATTCAATGGTATTGAA TTTTATTGCAACTAGGATTTTCGAGAGTTCCACAAAATATAGTTTTTGATCGAGCACCATGGCCGTCGGGTGATCATATA GCCGACCTTACTTAGTGGGATACGATTTTGTTTTTGCCAGGATTTCCCAGAGCAAGTGCTTATTGGGCAATTCTGCTAGA TATTGTAGCTCAGTTTTATTTCAGTGCCTGCATCACTTAGTGTTAATTCCCTCGTGTTCGTAGGGTGAAGATCCAATGGG GATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAGACAGAATCTTCAACTAGAAGTACCATTAAGAACACCTGAAG AATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAACACCAAGTCCCACACCTACCCCTACTCCTAAGAGAGTGAAT TTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAATAATTCACCTGGGAATTCAGCATCAAAAGGAAGATCATCCAT AAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGACACCAGCAGATATTGAAAAGGCTACAACACCAACTCCAGAAG TTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGATTAAG AGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCAAACGCAGAATCTGCTCATGGTGGAAGCGTTGGGGGTCATCT AAATGTAAGATTCAAGCAATGCTGTTGTCAACTTCCCTTTTTCTAGTGCTATTTTTGGTAGTCATTGTTGCTGAGTCTTG CTTTGTTTTAACAAATTAGTTCCTTTTTGCAGAAGAGAGAAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTC AACAACAAAGAAAAGAGCATAAGGAGGATGGACTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAA TGAATTGTTGACCTCATCCCCGGAAAAGGATATAGGTATCTCAATATAAATACTTATACTTGTATCCGCAATCATGAAAA TATGAAAGAATTTTATGTGTTAACTCTCTCTCTAACAGTTTTTTTTATTGAAACTTCCATGATGTATCAAGCATTAGTAC TAAAAATGTCAACAGAATATTTGTAAGATTACTATGGTTAATAACTCGATTTATATATACTTTATTTGTTCAGAAAATGA AGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGTGTGTAGAATCTGTTTTGTTGAACTAAATGAAGGAGGTGAGA CCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTTTGAAG GGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAAAACCTACCTGTAACTCTATTACGGATTCAAAGTGTTCGAAA TCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGATGGATACAGGCATGTGTACTTACTTTGATAAAGACCTTTGC TGATTTCTTATGAATGAATTATGACGACATGTTTCAATTAGGAGGTTAACAGATTTTATATAGTCTACTAGATCCACATT TCAAAAATATAAGCCACCTCCTGACACTAATCCCTTATTTGACTAAAATTTGCATTACTTATCCCTTGTATACTGCTTTT TGCTATCACACTATCTAGAAGCACTGAAGTTGTAGCTGTGTGGACTCACATGCTATCTCAGGATTGAGACACAGTTTTTT ATCCAAACCATCTATGATACTTTAGAAGTCAAAATTTTCCTTGGAGTTCTGCAACCACTAAAGTGCATTGTCTTACTAGG GAAATAGACTGTTGTCATTATGTCATTTTCACGAACCAACTATTCAAAAAGTTTAGTGTGTGATTAGGTTTTCATTGTAC TTCACGCTGATCCACATTGAAGTAAACGTGACAGTAACTTGCTTCTCTGTTTATGCGTTGGGGGGGGGGGATGTGTATCA ATGCAAACAGGAATTAAAACACACACTAAGATGTTGGGTTAAGTACACACCCCTCATGGAAAAGCTCATAGGAAGGGTGG AGACCTACTTGTGCTGAAATTCAAATTTTTATTGATCACTTGGTTATAGAGGCTCTGACACCATAACATGAACAACTATC TCAATTTTAGGTTTTTGGTGAAGATACATAAATGGTTTTATATTATATATTCTAACAATATTTCTTGATAGCTTCTTGTA CTGTGGGTTATTACTTATTAGTAATGATTCTCTTATAATTTGTCTTCTCAATTTAATAGGTTTTGGCAGGAAGTTCCGGT GCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTGGAGCAGCTATTGGTAAGACTAACAATCATCTCTGAACGGT CAAATTCGCAGTTTGGTTAGGCTCAGTTATTCGCCTCTATGCAGGTTTCAAAAATGGGAACTGGCGCGATTGCCATATCT CTTCCATTTTCTTGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGGTAAGTTTGCAAAACATTGGTAAAT ATTGATGTACATTTTTTTTCAATGTGATACATATTTTTCTTTTTAGCCAATTTCATTTCATGATACTAGGTTGGGTTTTC ACTGATTTATGCCAATTCTAACATTTTCTTAAAAATCTTGTGTCCAGTGAAGAGCAGGTTCATCTGGATCTATGCATCCG TCCAATTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCTGTGGTAATGGATTTTTGTCTAAACTTCATTTTTTTA CATGTACATTTCACTTGAAAGTTGAAACCAAGGTTGATAATATTGTATGAGAAATAAATGGTCAAATGAATCAAGTGCTA GATTTTTGTCACTAAAAGAAAAATGAATTGTTTGAGATTTGGTACAGATGAATTCTACCCTCTCAATTTTGTAACTTAAA TGACAATTTCATTGGAGATGTAATGGAACTAGATGTTCCCAACCAGATTCTAGAGAAGTTCTGGTTTATGAATATCCTGA TTCCACATGCCTTATTGCCAAATGTGGTGGCTTTGGTGTTAAGTTTAGAAATTTGCAATCCACACTTCGTGCATGTTTGG AAATCCTTTCACAATTGATTCTTAGGTCAAAATCAATTTTGGAGAGAAGCTTTATGAGTAGCTTCTGGGTTTCAGAATTG ATTTCTGAGAAATAGGAATGGTCTAGAGGAAGAACTCTGGCTAGCATTCTGACTTGTTATATATATTGTCTTTGTTACAT GCAGGTTCATGTGCAAGCAGTTTTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGTGTGGGAGTTCTA TCCTTGTGGAGGTTTTTAGATGGAGGAGGAGATGGCAAGCTTTATCAGAGCAGCAACAACTACATGGCCCTCAAACTGCA AACACACCACGTTCAGGCAGTGTTACTCAACCTGTGGTGCAAAATCAACAGAACTGAAACCAGAACTGCATCGATGTTTT TTTAGCTTCTCTTAACAAGCTAGGGGCTGCAGTGAGTTGCTTTTCAATTCAGAGGATTTGGAAGACACTTCTTGTGTATA GGGAATTGAACTTTATTACTTCACACCTACATTGGCCTTCATTGTACAGCTTGTGTTAGCAACATGTTTGGATACCCGTT GGTACCAGTGCAAAGGGATGTTAGCACTCAGTTCTAGACAAAAAGTGAACAATTTTTTTCTTATGGATTGGGATCATAGT TTGTTCAAGTTACACCCAACTGGTATCCAAATACACATACAATGACCTGGACTATAGCTTCTCTTGCTATGCAATTTCTG TTTGTTTATTTGTACTGAGCATCAGAAGGCTTTCATTTTTGTAGTGTAATTGGATGACAGACAATGATTTTGTTTTTGGT TGAACACAGGGCATGGATTGAGGAAATAATTTGGTTAGATTATCTTAGAGTTAGAGGTTGATCATTGATGGGACAATGTC TAATGCAATGATGTGGTAAACTAAATGTACGTTTGATTTTGTGTGTACGATACACAAAATCGATTCACACTTACAGAAGC TAAGGGAAGTAGTTTTTGTGAACCACAATTTTGGTTTCAACTGAATGAGTTCTGTTCAGCAAAGTTTTATGTGAGAATAA TAGTTGACTAATCTTCA
CDS sequence (LotjaGi2g1v0360500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCAGAGGAAAAGCATGTCAGTGAAGAAGATGCTGCAGCTTCTTGCAGAAGAACAGTTTCTCTTGCTGTTAACAA GGGTGAAGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAGACAGAATCTTCAACTAGAAGTAC CATTAAGAACACCTGAAGAATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAACACCAAGTCCCACACCTACCCCT ACTCCTAAGAGAGTGAATTTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAATAATTCACCTGGGAATTCAGCATC AAAAGGAAGATCATCCATAAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGACACCAGCAGATATTGAAAAGGCTA CAACACCAACTCCAGAAGTTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGATA TTTACTCCTAGGATTAAGAGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCAAACGCAGAATCTGCTCATGGTGG AAGCGTTGGGGGTCATCTAAATAAGAGAGAAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTCAACAACAAAG AAAAGAGCATAAGGAGGATGGACTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTG ACCTCATCCCCGGAAAAGGATATAGAAAATGAAGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGTGTGTAGAAT CTGTTTTGTTGAACTAAATGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACA AAGAATGTGCTATTAAATGGTTTAGTTTGAAGGGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAAAACCTACCT GTAACTCTATTACGGATTCAAAGTGTTCGAAATCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGATGGATACAG GTTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTGGAGCAGCTATTGGTTTCAA AAATGGGAACTGGCGCGATTGCCATATCTCTTCCATTTTCTTGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACC ATGGTGAAGAGCAGGTTCATCTGGATCTATGCATCCGTCCAATTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTC TGTGGTTCATGTGCAAGCAGTTTTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGTGTGGGAGTTCTA TCCTTGTGGAGGTTTTTAGATGGAGGAGGAGATGGCAAGCTTTATCAGAGCAGCAACAACTACATGGCCCTCAAACTGCA AACACACCACGTTCAGGCAGTGTTACTCAACCTGTGGTGCAAAATCAACAGAACTGA
Protein sequence (LotjaGi2g1v0360500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSEEKHVSEEDAAASCRRTVSLAVNKGEDPMGITEETTHVPPRKRQNLQLEVPLRTPEECSQDFVAIKMPQTPSPTPTP TPKRVNFLVSSRSVDTPTNNSPGNSASKGRSSIRSLLPKLSFRNRTPADIEKATTPTPEVSSSGVRERPLISRSLSLSKI FTPRIKRTSSLPVEEIGHSNAESAHGGSVGGHLNKRETQRKIARSLSVPVNNKEKSIRRMDSFFRVVPSTPRVKEGNELL TSSPEKDIENEDDDGEDIPEEEAVCRICFVELNEGGETFKLECSCKGELALAHKECAIKWFSLKGNKTCDVCKSEVQNLP VTLLRIQSVRNRIIGSRSQLEDLDGYRFWQEVPVLVIVSMLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGLLSSMTSST MVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQTA NTPRSGSVTQPVVQNQQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 484 | 484 | 4.1E-241 | – | |
| MobiDBLite | 1 | 57 | 57 | - | – | |
| Phobius | 1 | 351 | 351 | - | – | |
| PANTHER | 1 | 484 | 484 | 4.1E-241 | – | |
| MobiDBLite | 91 | 147 | 57 | - | – | |
| MobiDBLite | 91 | 119 | 29 | - | – | |
| MobiDBLite | 128 | 142 | 15 | - | – | |
| MobiDBLite | 235 | 256 | 22 | - | – | |
| Gene3D | 250 | 322 | 73 | 1.2E-14 | ||
| ProSiteProfiles | 257 | 319 | 63 | 19.361 | ||
| SUPERFAMILY | 261 | 316 | 56 | 5.05E-13 | – | |
| SMART | 264 | 313 | 50 | 1.0E-17 | ||
| Pfam | 265 | 312 | 48 | 5.2E-11 | ||
| CDD | 265 | 313 | 49 | 4.74539E-15 | – | |
| CDD | 352 | 465 | 114 | 2.11995E-5 | – | |
| Phobius | 352 | 372 | 21 | - | – | |
| TMHMM | 371 | 393 | 23 | - | – | |
| Phobius | 373 | 377 | 5 | - | – | |
| Phobius | 378 | 395 | 18 | - | – | |
| Phobius | 396 | 406 | 11 | - | – | |
| TMHMM | 406 | 428 | 23 | - | – | |
| Phobius | 407 | 428 | 22 | - | – | |
| Phobius | 429 | 433 | 5 | - | – | |
| TMHMM | 433 | 455 | 23 | - | – | |
| Phobius | 434 | 456 | 23 | - | – | |
| Phobius | 457 | 498 | 42 | - | – | |
| MobiDBLite | 472 | 498 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0360500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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